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Search of human proteins with 7657178
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657178 transmembrane protein 5 [Homo sapiens]
(443 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657178 transmembrane protein 5 [Homo sapiens] 917 0.0
gi|117938258 tachykinin 4 isoform beta [Homo sapiens] 32 1.2
gi|239756393 PREDICTED: hypothetical protein XP_002344913 [Homo ... 32 1.5
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 32 1.5
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 32 1.5
gi|4504519 heat shock 27kDa protein 2 [Homo sapiens] 32 1.5
gi|28178843 TG-interacting factor isoform a [Homo sapiens] 31 2.6
gi|4507473 TG-interacting factor isoform c [Homo sapiens] 31 2.6
gi|28178855 TG-interacting factor isoform d [Homo sapiens] 31 2.6
gi|28178853 TG-interacting factor isoform d [Homo sapiens] 31 2.6
gi|28178851 TG-interacting factor isoform d [Homo sapiens] 31 2.6
gi|28178857 TG-interacting factor isoform d [Homo sapiens] 31 2.6
gi|28178849 TG-interacting factor isoform c [Homo sapiens] 31 2.6
gi|28178845 TG-interacting factor isoform b [Homo sapiens] 31 2.6
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 31 2.6
gi|219842266 usherin isoform B [Homo sapiens] 30 3.4
gi|7706252 lipoyltransferase 1 [Homo sapiens] 30 3.4
gi|21729884 lipoyltransferase 1 [Homo sapiens] 30 3.4
gi|21729882 lipoyltransferase 1 [Homo sapiens] 30 3.4
gi|21729880 lipoyltransferase 1 [Homo sapiens] 30 3.4
gi|21729878 lipoyltransferase 1 [Homo sapiens] 30 3.4
gi|45545411 NCK-associated protein 1 isoform 2 [Homo sapiens] 30 4.4
gi|7305303 NCK-associated protein 1 isoform 1 [Homo sapiens] 30 4.4
gi|27544941 myosin IF [Homo sapiens] 30 5.7
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 29 7.5
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 29 7.5
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 29 7.5
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 29 7.5
gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens] 29 7.5
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens] 29 9.8
>gi|7657178 transmembrane protein 5 [Homo sapiens]
Length = 443
Score = 917 bits (2369), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MRLTRKRLCSFLIALYCLFSLYAAYHVFFGRRRQAPAGSPRGLRKGAAPARERRGREQST 60
MRLTRKRLCSFLIALYCLFSLYAAYHVFFGRRRQAPAGSPRGLRKGAAPARERRGREQST
Sbjct: 1 MRLTRKRLCSFLIALYCLFSLYAAYHVFFGRRRQAPAGSPRGLRKGAAPARERRGREQST 60
Query: 61 LESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWEHIFEGL 120
LESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWEHIFEGL
Sbjct: 61 LESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWEHIFEGL 120
Query: 121 LDPSDVTAQWREGKSIVGRTQYSFITGPAVIPGYFSVDVNNVVLILNGREKAKIFYATQW 180
LDPSDVTAQWREGKSIVGRTQYSFITGPAVIPGYFSVDVNNVVLILNGREKAKIFYATQW
Sbjct: 121 LDPSDVTAQWREGKSIVGRTQYSFITGPAVIPGYFSVDVNNVVLILNGREKAKIFYATQW 180
Query: 181 LLYAQNLVQIQKLQHLAVVLLGNEHCDNEWINPFLKRNGGFVELLFIIYDSPWINDVDVF 240
LLYAQNLVQIQKLQHLAVVLLGNEHCDNEWINPFLKRNGGFVELLFIIYDSPWINDVDVF
Sbjct: 181 LLYAQNLVQIQKLQHLAVVLLGNEHCDNEWINPFLKRNGGFVELLFIIYDSPWINDVDVF 240
Query: 241 QWPLGVATYRNFPVVEASWSMLHDERPYLCNFLGTIYENSSRQALMNILKKDGNDKLCWV 300
QWPLGVATYRNFPVVEASWSMLHDERPYLCNFLGTIYENSSRQALMNILKKDGNDKLCWV
Sbjct: 241 QWPLGVATYRNFPVVEASWSMLHDERPYLCNFLGTIYENSSRQALMNILKKDGNDKLCWV 300
Query: 301 SAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSIPVVEDVMTAG 360
SAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSIPVVEDVMTAG
Sbjct: 301 SAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSIPVVEDVMTAG 360
Query: 361 NCGNTSVHHGAPLQLLKSMGAPFIFIKNWKELPAVLEKEKTIILQEKIERRKMLLQWYQH 420
NCGNTSVHHGAPLQLLKSMGAPFIFIKNWKELPAVLEKEKTIILQEKIERRKMLLQWYQH
Sbjct: 361 NCGNTSVHHGAPLQLLKSMGAPFIFIKNWKELPAVLEKEKTIILQEKIERRKMLLQWYQH 420
Query: 421 FKTELKMKFTNILESSFLMNNKS 443
FKTELKMKFTNILESSFLMNNKS
Sbjct: 421 FKTELKMKFTNILESSFLMNNKS 443
>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
Length = 96
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 55 GREQSTLESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWE 114
G E+ TL +E WEG + Q LQ+ + T GK + GK +G Y E
Sbjct: 22 GGEEQTLSTEA-ETWEGAGPSIQ-------LQLQEVKT-GKASQFFGLMGKR-VGAYQLE 71
Query: 115 HIFEGLLDPSDVTAQWREGKS 135
H F+GLL + + RE ++
Sbjct: 72 HTFQGLLGKRSLFTEGREDEA 92
>gi|239756393 PREDICTED: hypothetical protein XP_002344913 [Homo
sapiens]
Length = 422
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 30 GRRRQAPAGSPRGLRKGAAPARERRGREQS-TLESEEWNPWEG 71
GRR P G R G PAR+RR R + L S +W+P EG
Sbjct: 154 GRRVNGPQGPDRW-PNGFRPARQRRTRRPARALNSGQWSPGEG 195
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 30 GRRRQAPAGSPRGLRKGAAPARERRGREQS-TLESEEWNPWEG 71
GRR P G R G PAR+RR R + L S +W+P EG
Sbjct: 154 GRRVNGPQGPDRW-PNGFRPARQRRTRRPARALNSGQWSPGEG 195
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 30 GRRRQAPAGSPRGLRKGAAPARERRGREQS-TLESEEWNPWEG 71
GRR P G R G PAR+RR R + L S +W+P EG
Sbjct: 154 GRRVNGPQGPDRW-PNGFRPARQRRTRRPARALNSGQWSPGEG 195
>gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]
Length = 182
Score = 31.6 bits (70), Expect = 1.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 25 YHVFFGRRRQAPAGSPRGLRKGAAPARERRGREQSTLESEEWNPWE 70
YH ++ R R APAG G R GA+ R G+ Q+ L+ + P E
Sbjct: 44 YHGYYVRPRAAPAG--EGSRAGASELRLSEGKFQAFLDVSHFTPDE 87
>gi|28178843 TG-interacting factor isoform a [Homo sapiens]
Length = 401
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 211 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 266
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 267 ETPFHSCTAGPN 278
>gi|4507473 TG-interacting factor isoform c [Homo sapiens]
Length = 272
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 82 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 137
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 138 ETPFHSCTAGPN 149
>gi|28178855 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 62 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 117
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 118 ETPFHSCTAGPN 129
>gi|28178853 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 62 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 117
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 118 ETPFHSCTAGPN 129
>gi|28178851 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 62 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 117
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 118 ETPFHSCTAGPN 129
>gi|28178857 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 62 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 117
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 118 ETPFHSCTAGPN 129
>gi|28178849 TG-interacting factor isoform c [Homo sapiens]
Length = 272
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 82 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 137
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 138 ETPFHSCTAGPN 149
>gi|28178845 TG-interacting factor isoform b [Homo sapiens]
Length = 286
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 269 LCNFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNE-----SLKNYQDALL 323
+CN+ + N+ R+ L ++L+KDG D + +R + ET+ +KN+ AL
Sbjct: 96 VCNW----FINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALE 151
Query: 324 QSDLTLCPVGVN 335
++ C G N
Sbjct: 152 ETPFHSCTAGPN 163
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 31 RRRQAPAGSPRGLRKGAAP-------ARERRGREQSTLESEEWNPWEGDEKNE 76
R R PRG R G AP +R +RG E+ LE EE + DE E
Sbjct: 289 RTRLGALALPRGDRPGRAPPAASARPSRSKRGGEERVLEKEEEEDDDEDEDEE 341
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 381 APFIFIKNWKELPAVLEKEKTIILQEKIERRKMLLQWYQHFKTELKMKFTNILESSFL 438
+P+ I+ + P+ L + I+++K R +LLQW + +T +K NI FL
Sbjct: 4054 SPWTLIQTLESSPSGL---RNFIVEQKENGRALLLQWSEPMRTNGVIKTYNIFSDGFL 4108
>gi|7706252 lipoyltransferase 1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 258 SWSMLHDERPYLC--NFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNESL 315
+W ++ + P +YE S + + I K+G ++C + A +HW P E + L
Sbjct: 268 TWEWIYGKTPKFSINTSFHVLYEQSHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKL 327
Query: 316 KN 317
+
Sbjct: 328 NS 329
>gi|21729884 lipoyltransferase 1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 258 SWSMLHDERPYLC--NFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNESL 315
+W ++ + P +YE S + + I K+G ++C + A +HW P E + L
Sbjct: 268 TWEWIYGKTPKFSINTSFHVLYEQSHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKL 327
Query: 316 KN 317
+
Sbjct: 328 NS 329
>gi|21729882 lipoyltransferase 1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 258 SWSMLHDERPYLC--NFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNESL 315
+W ++ + P +YE S + + I K+G ++C + A +HW P E + L
Sbjct: 268 TWEWIYGKTPKFSINTSFHVLYEQSHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKL 327
Query: 316 KN 317
+
Sbjct: 328 NS 329
>gi|21729880 lipoyltransferase 1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 258 SWSMLHDERPYLC--NFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNESL 315
+W ++ + P +YE S + + I K+G ++C + A +HW P E + L
Sbjct: 268 TWEWIYGKTPKFSINTSFHVLYEQSHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKL 327
Query: 316 KN 317
+
Sbjct: 328 NS 329
>gi|21729878 lipoyltransferase 1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 258 SWSMLHDERPYLC--NFLGTIYENSSRQALMNILKKDGNDKLCWVSAREHWQPQETNESL 315
+W ++ + P +YE S + + I K+G ++C + A +HW P E + L
Sbjct: 268 TWEWIYGKTPKFSINTSFHVLYEQSHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKL 327
Query: 316 KN 317
+
Sbjct: 328 NS 329
>gi|45545411 NCK-associated protein 1 isoform 2 [Homo sapiens]
Length = 1134
Score = 30.0 bits (66), Expect = 4.4
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 40 PRGLRKGAAPARERRGREQSTLESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLS 99
P+ K + A ++ ++Q+ + E G E + T+L DK ++L
Sbjct: 636 PKHCAKTISQAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNL---DKLHTALSELC 692
Query: 100 VQIWGKAAIGLYLWEHIF---EGLLDPSDVTAQWREGKSIVGRTQYSFITGPAVIPGYFS 156
I + +WEH F E L ++ R KSIVG T Y+ T P
Sbjct: 693 FSI--NYVPNMVVWEHTFTPREYLTSHLEI----RFTKSIVGMTMYNQATQEIAKPSELL 746
Query: 157 VDVNNVVLILNGREKAKIFYATQWLLYAQNLVQIQKLQHL 196
V + +L E Y + N V +Q+ QHL
Sbjct: 747 TSVRAYMTVLQSIEN----YVQIDITRVFNNVLLQQTQHL 782
>gi|7305303 NCK-associated protein 1 isoform 1 [Homo sapiens]
Length = 1128
Score = 30.0 bits (66), Expect = 4.4
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 40 PRGLRKGAAPARERRGREQSTLESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLS 99
P+ K + A ++ ++Q+ + E G E + T+L DK ++L
Sbjct: 630 PKHCAKTISQAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNL---DKLHTALSELC 686
Query: 100 VQIWGKAAIGLYLWEHIF---EGLLDPSDVTAQWREGKSIVGRTQYSFITGPAVIPGYFS 156
I + +WEH F E L ++ R KSIVG T Y+ T P
Sbjct: 687 FSI--NYVPNMVVWEHTFTPREYLTSHLEI----RFTKSIVGMTMYNQATQEIAKPSELL 740
Query: 157 VDVNNVVLILNGREKAKIFYATQWLLYAQNLVQIQKLQHL 196
V + +L E Y + N V +Q+ QHL
Sbjct: 741 TSVRAYMTVLQSIEN----YVQIDITRVFNNVLLQQTQHL 776
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 29.6 bits (65), Expect = 5.7
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 61 LESEEWNPWEGDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWEHIFEGL 120
L E W W GDE+ QH + D+ G T +++ K L+L E + E
Sbjct: 637 LTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGST----KVFVKNPESLFLLEEVRERK 692
Query: 121 LDPSDVTAQ--WR 131
D T Q WR
Sbjct: 693 FDGFARTIQKAWR 705
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 29.3 bits (64), Expect = 7.5
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 291 KDGNDKLCWVSAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSI 350
KD D W S W Q TNE + Q L+ LT E +YEA Y
Sbjct: 422 KDPEDNKGWFSWLWSWSEQNTNEQQPDVQPETLEEMLT------PEEKALLYEAIGYSET 475
Query: 351 PVVEDVMTAGNCGNTSVHHGAPLQLLKSMGAPFIFIKNWKE---LPAVLEKEKTIILQ 405
V ++ VH LKSM + +N ++ + V+E+ T+I+Q
Sbjct: 476 AVDPTLLKTFEALKFFVH-------LKSMS--IVLRENHQKPELVDIVIEEFSTLIVQ 524
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 29.3 bits (64), Expect = 7.5
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 291 KDGNDKLCWVSAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSI 350
KD D W S W Q TNE + Q L+ LT E +YEA Y
Sbjct: 422 KDPEDNKGWFSWLWSWSEQNTNEQQPDVQPETLEEMLT------PEEKALLYEAIGYSET 475
Query: 351 PVVEDVMTAGNCGNTSVHHGAPLQLLKSMGAPFIFIKNWKE---LPAVLEKEKTIILQ 405
V ++ VH LKSM + +N ++ + V+E+ T+I+Q
Sbjct: 476 AVDPTLLKTFEALKFFVH-------LKSMS--IVLRENHQKPELVDIVIEEFSTLIVQ 524
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 29.3 bits (64), Expect = 7.5
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 291 KDGNDKLCWVSAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSI 350
KD D W S W Q TNE + Q L+ LT E +YEA Y
Sbjct: 422 KDPEDNKGWFSWLWSWSEQNTNEQQPDVQPETLEEMLT------PEEKALLYEAIGYSET 475
Query: 351 PVVEDVMTAGNCGNTSVHHGAPLQLLKSMGAPFIFIKNWKE---LPAVLEKEKTIILQ 405
V ++ VH LKSM + +N ++ + V+E+ T+I+Q
Sbjct: 476 AVDPTLLKTFEALKFFVH-------LKSMS--IVLRENHQKPELVDIVIEEFSTLIVQ 524
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 29.3 bits (64), Expect = 7.5
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 291 KDGNDKLCWVSAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSI 350
KD D W S W Q TNE + Q L+ LT E +YEA Y
Sbjct: 422 KDPEDNKGWFSWLWSWSEQNTNEQQPDVQPETLEEMLT------PEEKALLYEAIGYSET 475
Query: 351 PVVEDVMTAGNCGNTSVHHGAPLQLLKSMGAPFIFIKNWKE---LPAVLEKEKTIILQ 405
V ++ VH LKSM + +N ++ + V+E+ T+I+Q
Sbjct: 476 AVDPTLLKTFEALKFFVH-------LKSMS--IVLRENHQKPELVDIVIEEFSTLIVQ 524
>gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens]
Length = 699
Score = 29.3 bits (64), Expect = 7.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 30 GRRRQAPAGSPRGLRKGAAPARERRGREQSTLESEEWNPWEGDEKNEQ 77
G R+Q P G + A ++R+GRE+ E EE E DE++E+
Sbjct: 248 GDRKQRP-----GEERRLAHQQQRQGREEEEDEEEEGEEGEEDEEDEE 290
>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
Length = 4314
Score = 28.9 bits (63), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 64 EEWNPWEGDEKNEQQHRFKTSLQILDKSTKG--KTDLSVQ--IWGKAAIGLYLWEHIFEG 119
EEW G EK + + T + L ++G DLS++ + IGL W +
Sbjct: 3227 EEWTKSAGLEKFDLRRFLCTESEQLIWKSEGLPSDDLSIENALVILQIIGLKSWSRVCPF 3286
Query: 120 LLDPSDVTAQW 130
L+DPS +W
Sbjct: 3287 LIDPSSQATEW 3297
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,159,018
Number of Sequences: 37866
Number of extensions: 779585
Number of successful extensions: 3401
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 45
length of query: 443
length of database: 18,247,518
effective HSP length: 105
effective length of query: 338
effective length of database: 14,271,588
effective search space: 4823796744
effective search space used: 4823796744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.