Guide to the Human Genome
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Name: SLC40A1 Sequence: fasta or formatted (571aa) NCBI GI: 7657100
Description:

solute carrier family 40 (iron-regulated transporter), member 1

Referenced in:

Iron, Copper, and Arsenic Metabolism
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         42           2
 C cysteine            2.1         12           2
 D aspartate           3.0         17           1
 E glutamate           4.7         27           3
 F phenylalanine       4.0         23           1
 G glycine             7.9         45           1
 H histidine           2.1         12           1
 I isoleucine          8.1         46           2
 K lysine              3.2         18           1
 L leucine            12.3         70           3
 M methionine          3.7         21           2
 N asparagine          4.4         25           1
 P proline             3.3         19           1
 Q glutamine           3.3         19           1
 R arginine            3.5         20           2
 S serine              7.5         43           1
 T threonine           6.5         37           2
 V valine              8.6         49           3
 W tryptophan          1.8         10           1
 Y tyrosine            2.8         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 40 (iron-regulated transporter)... 
RXFP4                 0.009   relaxin 3 receptor 2 
MAP3K1                0.007   mitogen-activated protein kinase kinase kinase 1 [H...
DOCK3                 0.007   dedicator of cytokinesis 3 
CD151                 0.006   CD151 antigen 
CD151                 0.006   CD151 antigen 
CD151                 0.006   CD151 antigen 
CD151                 0.006   CD151 antigen 
IL1R1                 0.006   interleukin 1 receptor, type I precursor 
MUC12                 0.005   PREDICTED: mucin 12 
MUC12                 0.005   PREDICTED: mucin 12, cell surface associated 
DNAH8                 0.005   dynein, axonemal, heavy polypeptide 8 
LPPR2                 0.005   lipid phosphate phosphatase-related protein type 2 [...
SLC16A12              0.005   solute carrier family 16 (monocarboxylic acid trans...
ADORA2A               0.005   adenosine A2a receptor 
HMGCS2                0.005   hydroxymethylglutaryl-CoA synthase 2 
P2RY8                 0.005   G-protein coupled purinergic receptor P2Y8 
ENAM                  0.005   enamelin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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