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Search of human proteins with 74136559
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74136559 prion protein interacting protein [Homo sapiens]
(337 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74136559 prion protein interacting protein [Homo sapiens] 712 0.0
gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens] 138 8e-33
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] 124 2e-28
gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens] 124 2e-28
gi|7662486 ring finger protein 44 [Homo sapiens] 38 0.011
gi|61966747 hypothetical protein LOC389151 [Homo sapiens] 35 0.073
gi|222080107 solute carrier family 23 (nucleobase transporters),... 33 0.47
gi|222080105 solute carrier family 23 (nucleobase transporters),... 33 0.47
gi|4809279 annexin VII isoform 2 [Homo sapiens] 32 0.81
gi|4502111 annexin VII isoform 1 [Homo sapiens] 32 0.81
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 31 1.4
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 31 1.8
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 31 1.8
gi|27886561 nuclear factor of activated T-cells, cytoplasmic, ca... 30 2.3
gi|27886559 nuclear factor of activated T-cells, cytoplasmic, ca... 30 2.3
gi|27886555 nuclear factor of activated T-cells, cytoplasmic, ca... 30 2.3
gi|4758804 nuclear factor of activated T-cells, cytoplasmic, cal... 30 2.3
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens] 30 3.1
gi|13399330 uroplakin 3B isoform a [Homo sapiens] 30 3.1
gi|213512168 hypothetical protein LOC259308 [Homo sapiens] 30 4.0
gi|150170699 kinesin family member 26A [Homo sapiens] 30 4.0
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 29 5.2
gi|197927236 hypothetical protein LOC729627 [Homo sapiens] 29 5.2
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 29 5.2
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 29 6.8
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 29 6.8
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 28 8.9
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ... 28 8.9
gi|40353727 synaptopodin isoform A [Homo sapiens] 28 8.9
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens] 28 8.9
>gi|74136559 prion protein interacting protein [Homo sapiens]
Length = 337
Score = 712 bits (1839), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA 60
MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA
Sbjct: 1 MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA 60
Query: 61 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST 120
AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST
Sbjct: 61 AGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSIST 120
Query: 121 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI 180
RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI
Sbjct: 121 RKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEI 180
Query: 181 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS 240
ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS
Sbjct: 181 ESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKS 240
Query: 241 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL 300
IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL
Sbjct: 241 IFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL 300
Query: 301 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF 337
QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF
Sbjct: 301 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF 337
>gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens]
Length = 349
Score = 138 bits (347), Expect = 8e-33
Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Query: 137 SFPPQRYHYFLVLDFEATCDK--PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194
+F Y Y ++DFEATC++ P EIIEFP++ LN T+EIE TF YV+P ++
Sbjct: 121 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT 180
Query: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVML 254
QL+ FC LTGI Q VD + QVL++V +WM K L K +T G WD+ L
Sbjct: 181 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWM-KLKELGTKYKYSLLTDGSWDMSKFL 239
Query: 255 PGQCQYLGLPVADYFKQWINLKKAY-SFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313
QCQ L + K+WIN++K+Y +F + L M + L + + GRPH G+DD
Sbjct: 240 NIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDS 299
Query: 314 KNIANI 319
KNIA I
Sbjct: 300 KNIARI 305
>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
Length = 691
Score = 124 bits (310), Expect = 2e-28
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 17/209 (8%)
Query: 141 QRYHYFLVLDFEATC--DKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTP 198
Q + Y +V+DFE+TC D H QEIIEFP + LN T +I+S F YVQP HP L+
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 199 FCTELTGIIQAMVDGQPSLQQVLERVDEWMAK----------EGLLDPNVKSI----FVT 244
FC ELTGI QA VD L+ L + +W+ K G+ +P+ + FVT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 245 CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIG 304
DWDL V L +C+ L + WI+L+ Y PK GL + + ++ G
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPK-GLSGALQEVGIEFSG 210
Query: 305 RPHSGIDDCKNIANIMKTLAYRGFIFKQT 333
R HSG+DD +N A + + G + K T
Sbjct: 211 REHSGLDDSRNTALLAWKMIRDGCVMKIT 239
>gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]
Length = 328
Score = 124 bits (310), Expect = 2e-28
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 17/209 (8%)
Query: 141 QRYHYFLVLDFEATC--DKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTP 198
Q + Y +V+DFE+TC D H QEIIEFP + LN T +I+S F YVQP HP L+
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 199 FCTELTGIIQAMVDGQPSLQQVLERVDEWMAK----------EGLLDPNVKSI----FVT 244
FC ELTGI QA VD L+ L + +W+ K G+ +P+ + FVT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 245 CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIG 304
DWDL V L +C+ L + WI+L+ Y PK GL + + ++ G
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPK-GLSGALQEVGIEFSG 210
Query: 305 RPHSGIDDCKNIANIMKTLAYRGFIFKQT 333
R HSG+DD +N A + + G + K T
Sbjct: 211 REHSGLDDSRNTALLAWKMIRDGCVMKIT 239
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 38.1 bits (87), Expect = 0.011
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 14 RPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGH-WGFPALTEPSASPAA 61
RPW + WPP+ P+ GP G PG WG P L P ASP A
Sbjct: 2 RPWALAVTRWPPSAPVGQRRFSAGP--GSTPGQLWGSPGLEGPLASPPA 48
>gi|61966747 hypothetical protein LOC389151 [Homo sapiens]
Length = 265
Score = 35.4 bits (80), Expect = 0.073
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 27/174 (15%)
Query: 25 PAPPLTLPWTWMGPSWGQHPGHWG--------FPALTEPSASPA----AGLGIFEVRR-- 70
P P P W WGQ PG G PA EP A+P+ AG +
Sbjct: 5 PRSPSAFPAPW----WGQQPGGPGPAKRLRLEEPAGPEPRAAPSLEDPAGDPAVDALTSI 60
Query: 71 VLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRKLAAHGFGA 130
V+ A+GC++ PL S R LG H S+ R A H A
Sbjct: 61 VVLAAGCALRVPLDDVDLVLEPAPTSILRVSLGGHTLILIPEVLLSSVDERSGAQHDSSA 120
Query: 131 SMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEII-------EFPILKLNGRT 177
+ V R + L+F A+ P+I QE EFP L+++ T
Sbjct: 121 GLEVDVFLGAVREDVVVELEFCASV--PEIAAQEEAYEEDADPEFPELRMDSPT 172
>gi|222080107 solute carrier family 23 (nucleobase transporters),
member 3 isoform 3 [Homo sapiens]
Length = 618
Score = 32.7 bits (73), Expect = 0.47
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 28 PLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGA 87
P PW W+ HPG W +P LT + A+G SM L
Sbjct: 301 PTKAPWIWL-----PHPGEWNWPLLTPRAL----------------AAGISM--ALAAST 337
Query: 88 ARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVSFP 139
+ Y L G L P P CS R L+ G G+ +A ++ P
Sbjct: 338 SSLGCYAL------CGRLLHLPPPPPHACS---RGLSLEGLGSVLAGLLGSP 380
>gi|222080105 solute carrier family 23 (nucleobase transporters),
member 3 isoform 2 [Homo sapiens]
Length = 610
Score = 32.7 bits (73), Expect = 0.47
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 28 PLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGA 87
P PW W+ HPG W +P LT + A+G SM L
Sbjct: 293 PTKAPWIWL-----PHPGEWNWPLLTPRAL----------------AAGISM--ALAAST 329
Query: 88 ARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVSFP 139
+ Y L G L P P CS R L+ G G+ +A ++ P
Sbjct: 330 SSLGCYAL------CGRLLHLPPPPPHACS---RGLSLEGLGSVLAGLLGSP 372
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 32.0 bits (71), Expect = 0.81
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 6 PAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAAG 62
PA G G P GG S+P PP G +G PG GF +P + G
Sbjct: 67 PAPGGYPGAPQPGGAPSYPGVPP--------GQGFGVPPGGAGFSGYPQPPSQSYGG 115
>gi|4502111 annexin VII isoform 1 [Homo sapiens]
Length = 466
Score = 32.0 bits (71), Expect = 0.81
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 6 PAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAAG 62
PA G G P GG S+P PP G +G PG GF +P + G
Sbjct: 67 PAPGGYPGAPQPGGAPSYPGVPP--------GQGFGVPPGGAGFSGYPQPPSQSYGG 115
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 5 SPAADGGRGRPWEGGLVSWPPAPPLTL------PWTWMGPSWGQHPGHWGFPALTEPSAS 58
+P G RG E G S P L P WMG SW PG G P + P
Sbjct: 860 TPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSW--QPGPQGPPGIPGPPGP 917
Query: 59 P 59
P
Sbjct: 918 P 918
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 30.8 bits (68), Expect = 1.8
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 6 PAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQ-HPGHWGFPALTEPSASPAAGLG 64
P DG RGRP G PP PP GPS Q G GFP + P P G
Sbjct: 1264 PGLDGERGRPGPAG----PPGPP--------GPSSNQGDTGDPGFPGIPGPK-GPKGDQG 1310
Query: 65 I 65
I
Sbjct: 1311 I 1311
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 30.8 bits (68), Expect = 1.8
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 6 PAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQ-HPGHWGFPALTEPSASPAAGLG 64
P DG RGRP G PP PP GPS Q G GFP + P P G
Sbjct: 1263 PGLDGERGRPGPAG----PPGPP--------GPSSNQGDTGDPGFPGIPGPK-GPKGDQG 1309
Query: 65 I 65
I
Sbjct: 1310 I 1310
>gi|27886561 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 1 [Homo sapiens]
Length = 1075
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 50 PALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSP 109
P+ E S SP+ I DAS C L+ + S + AR LGS L SP
Sbjct: 155 PSYRESSLSPSPASSISSRSWFSDASSCESLSHIYDDVD--SELNEAAARFTLGSPLTSP 212
Query: 110 CGVPEFCSISTRKLAAHGFGASMA 133
G P C +G G S++
Sbjct: 213 GGSPGGCPGEETWHQQYGLGHSLS 236
>gi|27886559 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 4 [Homo sapiens]
Length = 1045
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 50 PALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSP 109
P+ E S SP+ I DAS C L+ + S + AR LGS L SP
Sbjct: 155 PSYRESSLSPSPASSISSRSWFSDASSCESLSHIYDDVD--SELNEAAARFTLGSPLTSP 212
Query: 110 CGVPEFCSISTRKLAAHGFGASMA 133
G P C +G G S++
Sbjct: 213 GGSPGGCPGEETWHQQYGLGHSLS 236
>gi|27886555 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 3 [Homo sapiens]
Length = 1065
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 50 PALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSP 109
P+ E S SP+ I DAS C L+ + S + AR LGS L SP
Sbjct: 155 PSYRESSLSPSPASSISSRSWFSDASSCESLSHIYDDVD--SELNEAAARFTLGSPLTSP 212
Query: 110 CGVPEFCSISTRKLAAHGFGASMA 133
G P C +G G S++
Sbjct: 213 GGSPGGCPGEETWHQQYGLGHSLS 236
>gi|4758804 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 2 [Homo sapiens]
Length = 1068
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 50 PALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSP 109
P+ E S SP+ I DAS C L+ + S + AR LGS L SP
Sbjct: 155 PSYRESSLSPSPASSISSRSWFSDASSCESLSHIYDDVD--SELNEAAARFTLGSPLTSP 212
Query: 110 CGVPEFCSISTRKLAAHGFGASMA 133
G P C +G G S++
Sbjct: 213 GGSPGGCPGEETWHQQYGLGHSLS 236
>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
Length = 4314
Score = 30.0 bits (66), Expect = 3.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 169 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDE 226
P+L+ T++ + TF +++ VHP TP L ++ + P L++ L R E
Sbjct: 3797 PVLEKELNTLQPKDTFRLWLTAEVHPNFTPIL--LQSSLKITYESPPGLKKNLMRTYE 3852
>gi|13399330 uroplakin 3B isoform a [Homo sapiens]
Length = 320
Score = 30.0 bits (66), Expect = 3.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 12 RGRPWEGGLVSWPPAPPLTLPWTW 35
RGR GGL +WP PP P W
Sbjct: 284 RGRHTAGGLQAWPGPPPQPQPLAW 307
>gi|213512168 hypothetical protein LOC259308 [Homo sapiens]
Length = 1335
Score = 29.6 bits (65), Expect = 4.0
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 72 LDASG-CSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCG 111
L+A+G C +L+P+ + +LL++ + +L SH+ S CG
Sbjct: 645 LEANGACDVLSPIAAPVSIPRPHLLTQVKAILQSHIDSKCG 685
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 29.6 bits (65), Expect = 4.0
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 6 PAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAAG 62
PA DG G G L P P GP+WG PG A + P P AG
Sbjct: 1147 PALDGSLGDGSSGFLGPDRPDSP--------GPTWGPCPGEVAAVAPSRPGREPQAG 1195
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 29.3 bits (64), Expect = 5.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 22 SWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASP 59
S PP PP P + P PGH+ P + P + P
Sbjct: 994 SQPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRHPPSPP 1031
>gi|197927236 hypothetical protein LOC729627 [Homo sapiens]
Length = 266
Score = 29.3 bits (64), Expect = 5.2
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 24/76 (31%)
Query: 25 PAPPLTLPWTWMGPSWGQHPGHWG-----------------FPALTEPSASPAAGLGIFE 67
P P P W WGQ PG G P+L +P+ +PA G
Sbjct: 5 PRSPSAFPAPW----WGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGA---L 57
Query: 68 VRRVLDASGCSMLAPL 83
V+ A+GC++ PL
Sbjct: 58 TSIVVLAAGCALRVPL 73
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 24 PPAPPLTLPWTWMGPS-----WGQHPGHWGFPALTEPSAS 58
P PPL PW W P+ W + W + +EP AS
Sbjct: 966 PGPPPLMAPWPWGPPASQSSPWPRATAFWTSTSDSEPPAS 1005
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 28.9 bits (63), Expect = 6.8
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 44 PGHWGFPALTEPSASPAAGLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLG 103
PGH P T PSA P A + +S P + G + L++ K++
Sbjct: 1028 PGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLIS 1087
Query: 104 SHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVSFP 139
+ S +P+ + + R+ + H G SMAA FP
Sbjct: 1088 A---SQPALPQDGAQTLRRASPHSSGESMAAFPLFP 1120
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 28.9 bits (63), Expect = 6.8
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 7 AADGGRGRPWEGGLVSW--PPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAAGLG 64
AADGGR + + APPLTL G H G PALT+ SP G
Sbjct: 176 AADGGRPQRTVRAAETRGAAAAPPLTLE--------GPVQSHHGTPALTQGPQSPRDGAQ 227
Query: 65 IFEVRRVLDA--SGCSMLAPLQTGAA 88
+ R +D SG L P T A+
Sbjct: 228 LGACTRPVDVRDSGGRPLPPPDTLAS 253
>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
sapiens]
Length = 144
Score = 28.5 bits (62), Expect = 8.9
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 12 RGRPWEGGLVSWPPAPPLTLPWTWMGP--SWGQHPGHWGFPALTEPSASPA 60
RG PW S+P L LP G S G PG PAL A PA
Sbjct: 36 RGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPPPPALAARRAPPA 86
>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
sapiens]
Length = 144
Score = 28.5 bits (62), Expect = 8.9
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 12 RGRPWEGGLVSWPPAPPLTLPWTWMGP--SWGQHPGHWGFPALTEPSASPA 60
RG PW S+P L LP G S G PG PAL A PA
Sbjct: 36 RGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPPPPALAARRAPPA 86
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 28.5 bits (62), Expect = 8.9
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 15 PWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSA-SPAAGLGIFEVRRVLD 73
PWE G S +PP P M PSW + P E A P+ L R +++
Sbjct: 707 PWEPGRGSSMSSPPPLPPPPPMSPSWSERSVS---PLRPETEARPPSRQLQALLARNIIN 763
Query: 74 ASGCSMLAPLQTGA 87
A+ +P GA
Sbjct: 764 AARRKSASPRSAGA 777
>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
Length = 1049
Score = 28.5 bits (62), Expect = 8.9
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 6 PAADGGRGRPWEGGLVSWP--PAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASP 59
PA +G P +WP P P W+ P G P W P+L P P
Sbjct: 924 PAEAAAQGYPAPPPAPAWPSRPVPRSGAHWSHGPPPPGMPPPAWRQPSLLAPPGPP 979
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,489,192
Number of Sequences: 37866
Number of extensions: 724383
Number of successful extensions: 1822
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1795
Number of HSP's gapped (non-prelim): 50
length of query: 337
length of database: 18,247,518
effective HSP length: 103
effective length of query: 234
effective length of database: 14,347,320
effective search space: 3357272880
effective search space used: 3357272880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.