Guide to the Human Genome
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Search of human proteins with 74027257

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74027257 polyglutamine binding protein 1 [Homo sapiens]
         (265 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|74027257 polyglutamine binding protein 1 [Homo sapiens]            553   e-158
gi|74027255 polyglutamine binding protein 1 [Homo sapiens]            553   e-158
gi|74027253 polyglutamine binding protein 1 [Homo sapiens]            553   e-158
gi|74027247 polyglutamine binding protein 1 [Homo sapiens]            553   e-158
gi|5031957 polyglutamine binding protein 1 [Homo sapiens]             553   e-158
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]        59   4e-09
gi|55741709 RNA binding motif protein 25 [Homo sapiens]                59   6e-09
gi|14670268 RD RNA-binding protein [Homo sapiens]                      58   7e-09
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ...    57   2e-08
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ...    54   1e-07
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [...    54   1e-07
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]            54   1e-07
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       54   1e-07
gi|213385278 TNF receptor-associated factor 3 interacting protei...    53   2e-07
gi|20070262 TNF receptor-associated factor 3 interacting protein...    53   2e-07
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ...    53   3e-07
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]            52   4e-07
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]            52   5e-07
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi...    51   9e-07
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    51   1e-06
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi...    50   2e-06
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         50   2e-06
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s...    50   3e-06
gi|17999539 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Homo sapi...    49   3e-06
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]                      49   6e-06
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]                      49   6e-06
gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]                       49   6e-06
gi|4504487 histidine rich calcium binding protein precursor [Hom...    49   6e-06
gi|239747174 PREDICTED: hypothetical protein XP_002343931, parti...    48   8e-06
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...    48   1e-05

>gi|74027257 polyglutamine binding protein 1 [Homo sapiens]
          Length = 265

 Score =  553 bits (1425), Expect = e-158
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
           MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60

Query: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
           GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120

Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
           HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180

Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
           REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240

Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
           QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265


>gi|74027255 polyglutamine binding protein 1 [Homo sapiens]
          Length = 265

 Score =  553 bits (1425), Expect = e-158
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
           MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60

Query: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
           GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120

Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
           HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180

Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
           REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240

Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
           QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265


>gi|74027253 polyglutamine binding protein 1 [Homo sapiens]
          Length = 265

 Score =  553 bits (1425), Expect = e-158
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
           MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60

Query: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
           GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120

Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
           HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180

Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
           REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240

Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
           QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265


>gi|74027247 polyglutamine binding protein 1 [Homo sapiens]
          Length = 265

 Score =  553 bits (1425), Expect = e-158
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
           MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60

Query: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
           GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120

Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
           HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180

Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
           REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240

Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
           QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265


>gi|5031957 polyglutamine binding protein 1 [Homo sapiens]
          Length = 265

 Score =  553 bits (1425), Expect = e-158
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
           MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1   MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60

Query: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
           GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61  GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120

Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
           HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180

Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
           REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240

Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
           QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265


>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
          Length = 1564

 Score = 58.9 bits (141), Expect = 4e-09
 Identities = 30/98 (30%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  ++ R    D E   DR HD+      + DR  E+ +R  ++ +R  ++ +R+RER  
Sbjct: 713 REREREREKERDRERDRDRDHDRERERERERDREKER-EREREERERERER-ERERERER 770

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREEL 184
           ++ +RER R+R+++R+R  D  D+++G++ R  +REE+
Sbjct: 771 ER-ERERARERDKERERQRDWEDKDKGRDDRREKREEI 807



 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEK-LDRGHDKSDRGHDKSDRDRERG 145
           +  ++ R    + E +L+R   +      + +R  E+  DR HD+      + DR++ER 
Sbjct: 691 RERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKERE 750

Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
            ++ +RERER+RER+R+R  ++ +RE  +ER   R  +     K K    R+++
Sbjct: 751 REREERERERERERERERERER-ERERARERDKERERQRDWEDKDKGRDDRREK 803



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 93  RSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDR 151
           R+   D E + DR  ++  +R  D+      +L+R   +      + +RDRER     DR
Sbjct: 675 RARERDRERERDRERERERERERDREREKERELERERAREREREREKERDRER-----DR 729

Query: 152 ERERDRERDRDRGYDK-----ADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
           +R+ DRER+R+R  D+      +REE +  R   RE      + ++    +D+E
Sbjct: 730 DRDHDRERERERERDREKEREREREERERERERERERERERERERERARERDKE 783



 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDK-VDRERERDRE 158
           E ++DR  D+ D    + DR  E+     D+      + +RDRER  ++ ++RER R+RE
Sbjct: 662 ERRVDRVDDRRDERARERDRERER-----DRERERERERERDREREKERELERERARERE 716

Query: 159 RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
           R+R++   + DRE  ++R H R  E       +K   R+ EE
Sbjct: 717 REREK---ERDRERDRDRDHDRERERERERDREKEREREREE 755



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 96  NADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERER 155
           + + + + +R  D+      +    +++L+R   + +R  D+ D  R+    + DRERER
Sbjct: 626 HGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRERER 685

Query: 156 DRERDRDRGYDKADREEGKER---RHHRREELAPYPKSKKAVSRKDEELD 202
           DRER+R+R  ++ DRE  KER   R   RE      K +     +D + D
Sbjct: 686 DRERERERERER-DREREKERELERERAREREREREKERDRERDRDRDHD 734



 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRER-ERDRE 158
           +   +R H + DR  ++           H   +   ++ +R  ER  D+VD  R ER RE
Sbjct: 619 DSSFERRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARE 678

Query: 159 RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
           RDR+R  D+ +RE  +ER   R  E     + ++A  R+ E
Sbjct: 679 RDRERERDR-ERERERERERDREREKERELERERARERERE 718



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 100  EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
            E     S D+ D     S RS  + DR         D  DR +ER   + DRERER+R  
Sbjct: 1258 EPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRD 1317

Query: 160  DRDRGYDK-ADRE--EGKERRHHRREELAPYPKSKKAVSRKDEEL--DPMDPSSYSDAPR 214
             R R +D+ AD++    ++R   R  E       ++ + R+ E L  D ++     D  R
Sbjct: 1318 TRQREWDRDADKDWPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRDR 1377

Query: 215  GTWSTGLP--KRNEAK 228
               S+ +   KR EAK
Sbjct: 1378 TFESSQIESVKRCEAK 1393



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 21/145 (14%)

Query: 77  SPHDPNSVVTKSAKK--------LRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGH 128
           SP+  +S+ +   K+        +R       E+  +SH   DR H++ + +  K DR  
Sbjct: 372 SPYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQSH---DRRHERREDTRGKRDR-- 426

Query: 129 DKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR-REELAPY 187
           +K  R   + ++D+    D  D    RD  RDR    D  DR E ++ R  R   E+  Y
Sbjct: 427 EKDSREEREYEQDQSSSRDHRDDREPRD-GRDRRDARDTRDRRELRDSRDMRDSREMRDY 485

Query: 188 PKSKKAVSRKDEELDPMDPSSYSDA 212
            +  K      E  DP D  S  DA
Sbjct: 486 SRDTK------ESRDPRDSRSTRDA 504



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
           R    D E++ +R  ++ +R  ++      + +R  +++ R  DK +R+R+R ++  D+ 
Sbjct: 739 RERERDREKEREREREERERERERERERERERERERERA-RERDK-ERERQRDWEDKDKG 796

Query: 153 RERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSD 211
           R+  RE+  +   D+  R+   ER+  +R      P  +++  R+ E     D  +  D
Sbjct: 797 RDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYNSGD 855



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 13/92 (14%)

Query: 93   RSSNADAEEKL---DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
            RS + D+ ++L   DR     +R  ++ D    + DR  DK    +   DR RER     
Sbjct: 1289 RSGSFDSRDRLQERDRYEHDRERERERRDTRQREWDRDADKDWPRNRDRDRLRER----- 1343

Query: 150  DRERERD--RERDRDRG---YDKADREEGKER 176
            +RERERD  R+ DR+R     D  +R+  ++R
Sbjct: 1344 ERERERDKRRDLDRERERLISDSVERDRDRDR 1375



 Score = 35.0 bits (79), Expect = 0.068
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
           ++S  +      D   K DR  D  +    + D+S  +     D  D    +  RDR   
Sbjct: 407 SQSHDRRHERREDTRGKRDREKDSREEREYEQDQSSSR-----DHRDDREPRDGRDRRDA 461

Query: 146 YDKVDRERERDRERDRD----RGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEEL 201
            D  DR   RD    RD    R Y +  +E    R      +   Y   +   + + E+ 
Sbjct: 462 RDTRDRRELRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRKEDT 521

Query: 202 DPMDPSSYSDAPRGTWSTGLPKRNEAK 228
            P +  SY        S+    RNE++
Sbjct: 522 YPEESRSYGRNHLREESSRTEIRNESR 548



 Score = 34.7 bits (78), Expect = 0.088
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 14/127 (11%)

Query: 79  HDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKS 138
           HD      +  +  R    D+ E+ +   D+S     + DR       G D+ D    + 
Sbjct: 410 HDRRHERREDTRGKRDREKDSREEREYEQDQSSSRDHRDDREPRD---GRDRRDARDTRD 466

Query: 139 DRDRERGYDKVDRERERDRERDRDRGYDKADREEGKE---------RRHHRREELAPYPK 189
            R+     D  D    RD  RD     D  D    ++         R  HR+E+   YP+
Sbjct: 467 RRELRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRKED--TYPE 524

Query: 190 SKKAVSR 196
             ++  R
Sbjct: 525 ESRSYGR 531



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 106 SHDKSDRGHD--KSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
           SH  +   HD  ++  S+ + DR  ++ +R     D+ R+  +++   ER+R   R+RD+
Sbjct: 585 SHSSNSNYHDSWETRSSYPERDRYPERDNR-----DQARDSSFERRHGERDRRDNRERDQ 639

Query: 164 GYDKADREEGKE---RRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPR 214
                 R +G+     R  RREE     +  +   R+DE     D     D  R
Sbjct: 640 RPSSPIRHQGRNDELERDERREE----RRVDRVDDRRDERARERDRERERDRER 689



 Score = 28.5 bits (62), Expect = 6.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
           E + +  +D+  R   +     EK  RG   S      S+ +    ++      ERDR  
Sbjct: 550 ESRSEIRNDRMGRSRGRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYP 609

Query: 160 DRDRGYDKADREEGKERRHHRRE 182
           +RD   D+A R+   ERRH  R+
Sbjct: 610 ERD-NRDQA-RDSSFERRHGERD 630



 Score = 28.1 bits (61), Expect = 8.3
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 25/173 (14%)

Query: 77  SPHDPNSVVTKSA-KKLRSSNADAEEKLDRSHD-KSDRGHDKSDRSH-------EKLDRG 127
           SP   +S  + SA KK R ++A +   LD+  + K+++   K  R+        E +  G
Sbjct: 218 SPKRKSSPKSSSASKKDRKTSAVSSPLLDQQRNSKTNQSKKKGPRTPSPPPPIPEDIALG 277

Query: 128 HDKSDRGHDKSDRDRERGYDKVDRERERDRE---RDRDRGYDKADREEGK-ERRHHRR-- 181
               ++ +   DR  E+  D  DR R+ +R+   RD+ R    A +       RHH    
Sbjct: 278 KKYKEK-YKVKDRIEEKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSSS 336

Query: 182 ------EELAPYPKSKKAVSRK-DEELDPMDPSSYSDAPRGTWSTGLPKRNEA 227
                 +  +P P+ K+  S      L P  P   S +P  + S   P+R ++
Sbjct: 337 QSGSSIQRHSPSPRRKRTPSPSYQRTLTP--PLRRSASPYPSHSLSSPQRKQS 387


>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
          Length = 843

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 91  KLRSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
           K R  + D E   DR  ++S DR  D+S    +  DR  ++      + +R+RER   + 
Sbjct: 355 KERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERER---ER 411

Query: 150 DRERERDRERDRDRGYD-KADREEGKERRHHRRE 182
           +RERER+RER+R+R  D K DREE +E  + RR+
Sbjct: 412 EREREREREREREREKDKKRDREEDEEDAYERRK 445



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 14/114 (12%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           K  ++ R  + D +   +R  D+ DR  D+        DR  D+S R  +KS RDRER  
Sbjct: 339 KERERERERDRDRDRTKERDRDR-DRERDRDRDRERSSDRNKDRS-RSREKS-RDRER-- 393

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
              +RERER+RER+R+R  ++ +RE  +ER   R  E     K KK    +DEE
Sbjct: 394 ---ERERERERERERERERER-ERERERERERERERE-----KDKKRDREEDEE 438



 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 62  LPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSH 121
           +PY      D+ +     D   ++++   K R    D  +KL+    K ++   + ++  
Sbjct: 254 IPYPLITKEDINAIEMEEDKRDLISREISKFR----DTHKKLEEEKGKKEKERQEIEKER 309

Query: 122 EKLDRGHDKS-DRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDK-ADREEGKERRHH 179
            + +R  ++  +R   + +R+RER  +K ++ERER+RERDRDR   K  DR+  +ER   
Sbjct: 310 RERERERERERERREREREREREREREK-EKERERERERDRDRDRTKERDRDRDRERDRD 368

Query: 180 RREELAPYPKSKKAVSRK 197
           R  E +      ++ SR+
Sbjct: 369 RDRERSSDRNKDRSRSRE 386



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 90  KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
           ++ R    + E + +R  +K      + DR  ++        DR  D+ DRDRER  D+ 
Sbjct: 320 RERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDR-DRDRERSSDRN 378

Query: 150 -----DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPM 204
                 RE+ RDRER+R+R  ++    E +  R   RE      + ++   ++D E D  
Sbjct: 379 KDRSRSREKSRDREREREREREREREREREREREREREREREREREREKDKKRDREEDEE 438

Query: 205 D 205
           D
Sbjct: 439 D 439



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 76  LSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGH 135
           ++P  P  ++TK          D  + + R   K    H K +    K ++   + ++  
Sbjct: 250 VAPLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKER 309

Query: 136 DKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
            + +R+RER  ++ +RERER+RER+R++  ++ +RE  ++R   R +E
Sbjct: 310 RERERERERERERREREREREREREREKEKER-ERERERDRDRDRTKE 356



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 87  KSAKKLRSSNADAEEKLDR---SHDKSDRGHDKSDRSHEKLDRGHDKS---------DRG 134
           K  +KLR   A  +E+L        K  R ++K     E+  R   K          D  
Sbjct: 445 KLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDYD 504

Query: 135 HDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
            D+ D    RG     R R+R++E + D    K ++EE +E R     E  P P ++  +
Sbjct: 505 DDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAE--L 562

Query: 195 SRKDEELD 202
            R ++E +
Sbjct: 563 QRMEQEAE 570



 Score = 30.0 bits (66), Expect = 2.2
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKS-DRGHDKSDR-SHEKLDRGHDKSDRGHDKSDRDRER 144
           +  ++ R    + E + +R  DK  DR  D+ D     KL+R   + +  + +  ++ E 
Sbjct: 407 REREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEI 466

Query: 145 GYDKVDRERERDRERDRDRGYDKA 168
              K  RE E++ ER+ +R  + A
Sbjct: 467 RERKKTREYEKEAEREEERRREMA 490


>gi|14670268 RD RNA-binding protein [Homo sapiens]
          Length = 380

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 88  SAKKLRSSNADAEEKL-----DRSHDKSDRGHDKSDRSHEKLDRGHDKS-DRGHDKS--- 138
           S+ +LR    D EE       D      D G+++   +H        +S DR H+++   
Sbjct: 139 SSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDR 198

Query: 139 DRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR-REELAPYPKSKKAVSRK 197
           DRDRER  D+ DR+R+R+R+RDRDR  D+ DRE  ++R   R R+   P+ +S     R+
Sbjct: 199 DRDRERDRDR-DRDRDRERDRDRDRDRDR-DRERDRDRERDRDRDREGPFRRSDSFPERR 256



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 95  SNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKS-DRGHDKSDRDRERGYDKVDRER 153
           +++ A     RS D+S   +   DR  E+ DR  D+  DR  D+ DRDR+R  D+ +R+R
Sbjct: 176 AHSSASPPRSRSRDRSHERNRDRDRDRER-DRDRDRDRDRERDR-DRDRDRDRDR-ERDR 232

Query: 154 ERDRERDRDRGYDKADREEGKERRHHRR 181
           +R+R+RDRDR       +   ERR  R+
Sbjct: 233 DRERDRDRDREGPFRRSDSFPERRAPRK 260


>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
           sapiens]
          Length = 600

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 9/117 (7%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           K A++ R+S  + E   +R  ++ DR  D+ DR  ++ +R  D+  +   + DR+ ER  
Sbjct: 244 KQAERERASERETERDKERERER-DRDRDR-DRRQKERERQTDRKRQRRTERDRETER-- 299

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKER-RHHRREELAPYPKSKKAVSRKDEELD 202
            K +R+RER+RER+R+R   K +RE  +ER R  +RE      K ++   ++  E+D
Sbjct: 300 -KRERQRERERERERNR---KRERERERERERERQRETERDREKERERKRKRQTEMD 352



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 13/125 (10%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHD---KSDRDRE 143
           +  ++ R    + E K +  H +  R  ++   +  + +R   ++DR  D   K++R+RE
Sbjct: 185 RQERRERERQREKENKTEDRHSERGRERERERETETETERKR-QTDRERDRQRKTERERE 243

Query: 144 RGYDK-------VDRERERDRERDRDRGYDK--ADREEGKERRHHRREELAPYPKSKKAV 194
           +  ++        +R++ER+RERDRDR  D+   +RE   +R+  RR E     + K+  
Sbjct: 244 KQAERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTERDRETERKRER 303

Query: 195 SRKDE 199
            R+ E
Sbjct: 304 QRERE 308



 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 93  RSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKS-DRGHDKS-----DRDRERG 145
           R    D E++ +R  D+  DR  +K     ++ +R  ++  +RG D+      +R+R+R 
Sbjct: 95  RERQRDREKERERQTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRD 154

Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
            +K +RER+ DRER R    ++    E ++ R  RRE      K  K   R  E
Sbjct: 155 AEK-ERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRHSE 207



 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 22/97 (22%), Positives = 49/97 (50%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  ++ R  N   E + +R  ++  +   + DR  E+  +   +++   +++ +    G 
Sbjct: 305 RERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGR 364

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
            + +RERER+RERDR    ++ +RE  ++R   +  E
Sbjct: 365 RQAERERERERERDRQSAREREERERDRDRDRQKERE 401



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 11/116 (9%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
           R    DAE++ +R   ++DR   +    + + +R  +K+ +   + +R RE+     DR 
Sbjct: 149 RERQRDAEKERER---QTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRH 205

Query: 153 RERDRERDRDRGYD-------KADREEGKERRHHR-REELAPYPKSKKAVSRKDEE 200
            ER RER+R+R  +       + DRE  ++R+  R RE+ A   ++ +  + +D+E
Sbjct: 206 SERGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKE 261



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
           R  N   E +  R   +++R  D+      + DR H K DR H +  RDRE+     +RE
Sbjct: 54  RERNRQKERERRREKRQTERETDRKRERRREKDR-HRKRDR-HRERQRDREK-----ERE 106

Query: 153 RERDRERDRDRGYDKADREEGKERRHHRREE 183
           R+ DRERDR R  ++ +R++ +ER   R  E
Sbjct: 107 RQTDRERDRQREKER-NRQKERERETEREGE 136



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDK-SDRDRER 144
           + A+K R    D E +     ++  +R  +K+ +   + +R  +K ++  D+ S+R RER
Sbjct: 153 RDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRHSERGRER 212

Query: 145 GYDK-----VDRERERDRERDRDRGYDK-----ADREEGKERRHHRREE 183
             ++      +R+R+ DRERDR R  ++     A+RE   ER   R +E
Sbjct: 213 ERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKE 261



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 80  DPNSVVTKSAKKLRSSNADAEEK--LDRSHD---KSDRGHDKSDRSHEKLDRGHDKSDRG 134
           D +S   +  ++ R +  + E K   DR  D   K++R  +K        +R  ++    
Sbjct: 203 DRHSERGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKER 262

Query: 135 HDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
             + DRDR+R   + +RER+ DR+R R    D+ + E  +ER+  R  E     K ++  
Sbjct: 263 ERERDRDRDRDRRQKERERQTDRKRQRRTERDR-ETERKRERQRERERERERNRKRERER 321

Query: 195 SRKDE 199
            R+ E
Sbjct: 322 ERERE 326



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 90  KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
           ++ R +  + + K +R  +K DR H K DR  E   R  D+      ++DR+R+R  +K 
Sbjct: 66  REKRQTERETDRKRERRREK-DR-HRKRDRHRE---RQRDREKERERQTDRERDRQREKE 120

Query: 150 ---DRERERDRERDRDRGYDKADREEGKERRHHRRE 182
               +ERER+ ER+ +RG D+  + +G+  R  +R+
Sbjct: 121 RNRQKERERETEREGERGRDR--QTDGQRERERQRD 154



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 99  AEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKS-DRDRERGYDKV-DRERERD 156
           A E+ +R  D+      + +R  EK   G  ++++  ++  DR+ ERG ++  +RE+++ 
Sbjct: 382 AREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGRERGREREKQKG 441

Query: 157 RERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKD 198
           RERDR+R   + DR+ G++R+        P   ++  V + D
Sbjct: 442 RERDRER---QTDRQAGRQRKRSTLYVNPPPRTARSGVVQSD 480



 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKL---DRGHDKSDRGHDKSDRDRE 143
           +  ++ R    + E +  R  D+      K++R  EK    +R  ++      + +R+R+
Sbjct: 208 RGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKERERERD 267

Query: 144 RGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
           R  D+  R++ER+R+ DR R        E + +R  +RE      +++K    ++ E
Sbjct: 268 RDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERE 324



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
           R     AE + +R  ++ DR     +R   + DR  D+      ++++DR+ G  + +++
Sbjct: 361 REGRRQAERERERERER-DR-QSAREREERERDRDRDRQKERERQTEKDRD-GQRETEKQ 417

Query: 153 RERDRERDRDRGYDKA---DREEGKERRHHRREE 183
           RER+++R+ +RG ++    ++++G+ER   R+ +
Sbjct: 418 REREKDRESERGRERGREREKQKGRERDRERQTD 451



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  K+ R +  D E    R+      G  +++R  E+      +S R  ++ +RDR+R  
Sbjct: 341 RERKRKRQTEMDRE----RNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDR 396

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
            K +RER+ +++RD  R  +K  RE  K+R   R  E     + +K   R  E
Sbjct: 397 QK-ERERQTEKDRDGQRETEK-QREREKDRESERGRERGREREKQKGRERDRE 447



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  +K R+   + E + +R   + +RG D+      + +R  D       ++DR+R+R  
Sbjct: 115 RQREKERNRQKERERETER---EGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQT 171

Query: 147 DK---VDRERE------RDRERDRDRGYDKADR--EEGKERRHHRREE 183
           ++    +RERE      R+RER R++     DR  E G+ER   R  E
Sbjct: 172 ERNRQKEREREKNRQERRERERQREKENKTEDRHSERGRERERERETE 219



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 10/128 (7%)

Query: 98  DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV-------D 150
           + E + DR   +      +++R  E+  R  ++    + K +R+RER  ++        D
Sbjct: 278 ERERQTDRKRQRRTERDRETERKRER-QRERERERERNRKRERERERERERERQRETERD 336

Query: 151 RERERDRERDRDRGYDK-ADREEGKE-RRHHRREELAPYPKSKKAVSRKDEELDPMDPSS 208
           RE+ER+R+R R    D+  +R+ G+E RR   RE      + +++   ++E     D   
Sbjct: 337 REKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDR 396

Query: 209 YSDAPRGT 216
             +  R T
Sbjct: 397 QKERERQT 404



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)

Query: 88  SAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD 147
           S ++  S  +     L ++H  +D G D+     ++ +R  +K     + +DR RER  +
Sbjct: 27  SRRRPGSQESPRRRGLGQAHKDAD-GDDRERNRQKERERRREKRQTERE-TDRKRERRRE 84

Query: 148 KV-----DRERER--DRERDRDRGYDK-ADREEGKERRHHRREE 183
           K      DR RER  DRE++R+R  D+  DR+  KER   +  E
Sbjct: 85  KDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKERE 128



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  ++ R      E + DR  ++  +   +++   E+ +R   +  R   + +R+RER  
Sbjct: 319 RERERERERERQRETERDREKERERKRKRQTEMDRER-NRQTGREGRRQAERERERERER 377

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
           D+       +RERDRDR   K    + ++ R  +RE      + K   S +  E
Sbjct: 378 DRQSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGRE 431



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 90  KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD-K 148
           K+ R +  D E +  R   +      + +R  E+ +R  ++      +++RDRE+  + K
Sbjct: 286 KRQRRTERDRETERKRERQRERERERERNRKRER-ERERERERERQRETERDREKERERK 344

Query: 149 VDRERERDRERDRDRGYD---KADREEGKERRHHRR 181
             R+ E DRER+R  G +   +A+RE  +ER   R+
Sbjct: 345 RKRQTEMDRERNRQTGREGRRQAERERERERERDRQ 380



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 87  KSAKKLRSSNADAEEKLDRSHD---KSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRE 143
           +  ++ R +  + E   DR  D   + +R  D       + DR   +    + + +R+RE
Sbjct: 123 RQKERERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKERERE 182

Query: 144 RG-YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
           +   ++ +RER+R++E   +  + +  RE  +ER      E       ++   RK E
Sbjct: 183 KNRQERRERERQREKENKTEDRHSERGRERERERETETETERKRQTDRERDRQRKTE 239



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 10/104 (9%)

Query: 90  KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHE-KLDRGHDKSDRGHDKSDRDRERGYD- 147
           K+ R    + E + +R  ++      + +R  E + DR  ++  +   +++ DRER    
Sbjct: 300 KRERQRERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQT 359

Query: 148 --------KVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
                   + +RERER+R+R   R  ++ +R+  ++R+  R  +
Sbjct: 360 GREGRRQAERERERERERDRQSAREREERERDRDRDRQKERERQ 403



 Score = 36.6 bits (83), Expect = 0.023
 Identities = 21/73 (28%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEK-LDRGHDKSDRGHDKS-DRDRERGYDKVD 150
           R  + D +++ +R  +K   G  ++++  E+  DR   +S+RG ++  +R++++G ++ D
Sbjct: 390 RDRDRDRQKERERQTEKDRDGQRETEKQREREKDR---ESERGRERGREREKQKGRER-D 445

Query: 151 RERERDRERDRDR 163
           RER+ DR+  R R
Sbjct: 446 RERQTDRQAGRQR 458



 Score = 35.8 bits (81), Expect = 0.040
 Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 126 RGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYD-KADREEGKERRHHRREEL 184
           RG  ++ +  D  DR+R R  ++  R  +R  ER+ DR  + + +++  ++R  HR  + 
Sbjct: 40  RGLGQAHKDADGDDRERNRQKERERRREKRQTERETDRKRERRREKDRHRKRDRHRERQR 99

Query: 185 APYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRP 244
               + ++   R+ +     + +   +  R T         E + G D    G   ++R 
Sbjct: 100 DREKERERQTDRERDRQREKERNRQKERERET-------EREGERGRDRQTDGQRERER- 151

Query: 245 YPSPGAVLRANAEASRTKQQD 265
                   + +AE  R +Q D
Sbjct: 152 --------QRDAEKERERQTD 164


>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
           [Homo sapiens]
          Length = 624

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 38/215 (17%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKL---DRGHDKSDRGHDKSD-RD 141
           ++S  + RS N     + DR   KS   H K  +S E+     R H +  R   +   ++
Sbjct: 329 SQSKHRSRSHNRSRSRQKDRRRSKSP--HKKRSKSRERRKSRSRSHSRDKRKDTREKIKE 386

Query: 142 RERGYDKVDRERER------------------DRERDRDRGYDK-ADREEGKERRHHR-- 180
           +ER  +K DRE+ER                  D+ER++DR  DK  DRE  +E+ H +  
Sbjct: 387 KERVKEK-DREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDR 445

Query: 181 -REELAPYPKSKKAVSRKDEELDP---------MDPSSYSDAPRGTWSTGLPKRNEAKTG 230
            +E+     K K+    + +E+D            P SY+ + R   S+   +R  +++ 
Sbjct: 446 DKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSS 505

Query: 231 ADTTAAGPLFQQRPYPSPGAVLRANAEASRTKQQD 265
           + +       +++   SP    R   +  R K++D
Sbjct: 506 SRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERD 540



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 88  SAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD 147
           ++++ RSS+ +   +  RS  +S R      R   +       S R  +K D+ RE+  D
Sbjct: 486 ASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR-----SPSPRSRNKKDKKREKERD 540

Query: 148 KVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMD 205
            +   RER+R     +  +  D   GKE+       L     +K+  S   +E+D  D
Sbjct: 541 HISERRERERSTSMRKSSNDRD---GKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKD 595



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 87  KSAKKLRSSNADAEEKLD-------RSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSD 139
           K  +K RS   D + K D       RS++ S R    S     +  R   +S R      
Sbjct: 457 KEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIK 516

Query: 140 RDRERGYDKVDR-ERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKD 198
           R   R      R ++++ RE++RD   ++ +RE     R    +        K + S K+
Sbjct: 517 RKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKE 576

Query: 199 EELDPMDPSSYS------DAPR 214
           +E +    SS S      DAPR
Sbjct: 577 KEHNKEPDSSVSKEVDDKDAPR 598


>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
           [Homo sapiens]
          Length = 508

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 38/215 (17%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKL---DRGHDKSDRGHDKSD-RD 141
           ++S  + RS N     + DR   KS   H K  +S E+     R H +  R   +   ++
Sbjct: 213 SQSKHRSRSHNRSRSRQKDRRRSKSP--HKKRSKSRERRKSRSRSHSRDKRKDTREKIKE 270

Query: 142 RERGYDKVDRERER------------------DRERDRDRGYDK-ADREEGKERRHHR-- 180
           +ER  +K DRE+ER                  D+ER++DR  DK  DRE  +E+ H +  
Sbjct: 271 KERVKEK-DREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDR 329

Query: 181 -REELAPYPKSKKAVSRKDEELDP---------MDPSSYSDAPRGTWSTGLPKRNEAKTG 230
            +E+     K K+    + +E+D            P SY+ + R   S+   +R  +++ 
Sbjct: 330 DKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSS 389

Query: 231 ADTTAAGPLFQQRPYPSPGAVLRANAEASRTKQQD 265
           + +       +++   SP    R   +  R K++D
Sbjct: 390 SRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERD 424



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 88  SAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD 147
           ++++ RSS+ +   +  RS  +S R      R   +       S R  +K D+ RE+  D
Sbjct: 370 ASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR-----SPSPRSRNKKDKKREKERD 424

Query: 148 KVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMD 205
            +   RER+R     +  +  D   GKE+       L     +K+  S   +E+D  D
Sbjct: 425 HISERRERERSTSMRKSSNDRD---GKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKD 479



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 87  KSAKKLRSSNADAEEKLD-------RSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSD 139
           K  +K RS   D + K D       RS++ S R    S     +  R   +S R      
Sbjct: 341 KEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIK 400

Query: 140 RDRERGYDKVDR-ERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKD 198
           R   R      R ++++ RE++RD   ++ +RE     R    +        K + S K+
Sbjct: 401 RKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKE 460

Query: 199 EELDPMDPSSYS------DAPR 214
           +E +    SS S      DAPR
Sbjct: 461 KEHNKEPDSSVSKEVDDKDAPR 482


>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKS---DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRE 143
           +  K+ R  + D E + +R  ++    DR  +K      + + G DK      + DRDRE
Sbjct: 104 RDRKRERWGDRDRETETERQEERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDRE 163

Query: 144 RGYDKVDRERERDRE----------RDRDRGYDKADREEGKERRHHR-----REELAPYP 188
           R   + +R R+R+RE          RDR+R  +K DRE  ++R+  R     RE      
Sbjct: 164 REMGETERYRDRERERQKQRETRRDRDRERQREKEDRERDRDRQKEREKDRYRERETGRD 223

Query: 189 KSKKAVSRKDEELDPMDPSSYSDAPRGTW 217
           + K+    +  E D  D     D   G W
Sbjct: 224 RDKERDRERQREKD-RDRQKAIDCVPGRW 251



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 118 DRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV-----DRERERDRERDRDRGYDKADREE 172
           +R  ++    H + DR  +K DRDR+R  D+      DR+R+R+R  DRDR  +   +EE
Sbjct: 67  ERQRKRAKERHREKDREIEK-DRDRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEE 125

Query: 173 GKERRHHRREELAPYPKSKKAVSRKDEELD 202
            + +R  +RE+     + ++    KD E++
Sbjct: 126 RERQRDRKREKDRERQRQREIGIDKDREIE 155



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 84  VVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRE 143
           + T+  +       + E   DR  ++  +   + DR  E   R  +K DR  D+ DR +E
Sbjct: 154 IETEKDRDREREMGETERYRDRERERQKQRETRRDRDRE---RQREKEDRERDR-DRQKE 209

Query: 144 RGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYP 188
           R  D+  RERE  R+RD++R     DRE  +E+   R++ +   P
Sbjct: 210 REKDRY-RERETGRDRDKER-----DRERQREKDRDRQKAIDCVP 248



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 17/111 (15%)

Query: 98  DAEEKLDRSHDK---SDRGHDK-SDRSHEKLDRGHDKSDRGHD-KSDRDRERGYDK---V 149
           D + K DR   +    DR  ++  DR  E      ++ +R  D K ++DRER   +   +
Sbjct: 89  DRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEERERQRDRKREKDRERQRQREIGI 148

Query: 150 DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
           D++RE + E+DRDR     +RE G+  R+  RE      + K+  +R+D +
Sbjct: 149 DKDREIETEKDRDR-----EREMGETERYRDRER----ERQKQRETRRDRD 190



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           ++ ++ R  + + E+  DR   K DR   +      K +R  D+      +   +RER  
Sbjct: 72  RAKERHREKDREIEKDRDRQR-KRDRERQRWRDRDRKRERWGDRDRETETERQEERER-- 128

Query: 147 DKVDRERERDRERDRDR--GYDKADREEGKERRHHRREEL 184
            + DR+RE+DRER R R  G DK DRE   E+   R  E+
Sbjct: 129 -QRDRKREKDRERQRQREIGIDK-DREIETEKDRDREREM 166



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 150 DRERERDRERDRDRGYDK---ADREEGKERRHHRREE 183
           +RER+R+RER R R  ++    DRE  K+R   R+ +
Sbjct: 59  ERERQRERERQRKRAKERHREKDREIEKDRDRQRKRD 95


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 75   WLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRG 134
            W    D +S       + RS+N D E + DR  +  DR  ++S     + DR        
Sbjct: 2135 WDRHRDKDSSRDWDRNRERSANRDREREADRGKE-WDRSRERSRNRERERDR-------- 2185

Query: 135  HDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
              + DRDR R      RER+RD+ RDR+RG D+ DR + KE     + E
Sbjct: 2186 --RRDRDRSR-----SRERDRDKARDRERGRDRKDRSKSKESARDPKPE 2227



 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 12/110 (10%)

Query: 93   RSSNADAEEKLDRSHDKS-----DRGHDKS---DRSHEKLDRGHDKSDRGHDKSDRDRER 144
            R  + D   + DR  DK      DR  ++S   DR  E  DRG +  DR  ++S R+RER
Sbjct: 2125 RERDWDRPREWDRHRDKDSSRDWDRNRERSANRDREREA-DRGKEW-DRSRERS-RNRER 2181

Query: 145  GYDKV-DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKA 193
              D+  DR+R R RERDRD+  D+    + K+R   +     P P++ +A
Sbjct: 2182 ERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKESARDPKPEASRA 2231



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 1/138 (0%)

Query: 100  EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV-DRERERDRE 158
            EE   +     DR  ++    +   +R  D+        D+D  R +D+  +R   RDRE
Sbjct: 2101 EEPDAQGRASEDRRRERERGRNWSRERDWDRPREWDRHRDKDSSRDWDRNRERSANRDRE 2160

Query: 159  RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWS 218
            R+ DRG +     E    R   R+      +S+     +D+  D        D  +   S
Sbjct: 2161 READRGKEWDRSRERSRNRERERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKES 2220

Query: 219  TGLPKRNEAKTGADTTAA 236
               PK   ++     TA+
Sbjct: 2221 ARDPKPEASRASDAGTAS 2238


>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
           isoform 2 [Homo sapiens]
          Length = 625

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRER-- 144
           K  +K R  + D E+  +   ++   G  +  ++  + D    K DRG+ + DRD ER  
Sbjct: 189 KEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQK-DRGNRERDRDSERKK 247

Query: 145 -------GYDKVDRERERDRERDRDRGYDKADREEGKERRHH---RREELAPYPKSKKAV 194
                  G  + +R R+RDRERDRD+G D+ DR   K   H     RE+   + K +K  
Sbjct: 248 ETERKSEGGKEKERLRDRDRERDRDKGKDR-DRRRVKNGEHSWDLDREKNREHDKPEKKS 306

Query: 195 SRKDEELDPMDPSSYSDAPRGT 216
           +   E    +   ++ D+   T
Sbjct: 307 ASSGEMSKKLSDGTFKDSKAET 328



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 85  VTKSAKKLRSSNADAEEKL--DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDR 142
           +T  +++L + N   EE      + D+ D    +   S ++  +   K DR   + D+D+
Sbjct: 142 LTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDK 201

Query: 143 ER-----GYDKVDRERER-------DRERDRDRGYDKADREEGKERRHHRREELAPYPKS 190
           E+     G    + ERER       D ER +DRG  + DR+  +++   R+ E     K 
Sbjct: 202 EKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERKSEGG---KE 258

Query: 191 KKAVSRKDEELD 202
           K+ +  +D E D
Sbjct: 259 KERLRDRDRERD 270


>gi|20070262 TNF receptor-associated factor 3 interacting protein 1
           isoform 1 [Homo sapiens]
          Length = 691

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRER-- 144
           K  +K R  + D E+  +   ++   G  +  ++  + D    K DRG+ + DRD ER  
Sbjct: 189 KEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQK-DRGNRERDRDSERKK 247

Query: 145 -------GYDKVDRERERDRERDRDRGYDKADREEGKERRHH---RREELAPYPKSKKAV 194
                  G  + +R R+RDRERDRD+G D+ DR   K   H     RE+   + K +K  
Sbjct: 248 ETERKSEGGKEKERLRDRDRERDRDKGKDR-DRRRVKNGEHSWDLDREKNREHDKPEKKS 306

Query: 195 SRKDEELDPMDPSSYSDAPRGT 216
           +   E    +   ++ D+   T
Sbjct: 307 ASSGEMSKKLSDGTFKDSKAET 328



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 85  VTKSAKKLRSSNADAEEKL--DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDR 142
           +T  +++L + N   EE      + D+ D    +   S ++  +   K DR   + D+D+
Sbjct: 142 LTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDK 201

Query: 143 ER-----GYDKVDRERER-------DRERDRDRGYDKADREEGKERRHHRREELAPYPKS 190
           E+     G    + ERER       D ER +DRG  + DR+  +++   R+ E     K 
Sbjct: 202 EKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERKSEGG---KE 258

Query: 191 KKAVSRKDEELD 202
           K+ +  +D E D
Sbjct: 259 KERLRDRDRERD 270


>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
           containing B [Homo sapiens]
          Length = 546

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 94  SSNADAEEKLDRSHDKSDRG---HDKSDRSHEKLDRG----HDKSDRGHDKSDRDRERGY 146
           SS+ D E + ++   + +R     +K  R    +DRG      +S   H    R R+R  
Sbjct: 288 SSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKG 347

Query: 147 DKVDRERERDRE----RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
           D+ DR+RER++E    R RDR YDK +R   +E+   R  E +   +S+  V  K  + D
Sbjct: 348 DRRDRDREREKENERGRRRDRDYDK-ERGNEREKERERSRERSKEQRSRGEVEEKKHKED 406

Query: 203 PMD 205
             D
Sbjct: 407 KDD 409



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           K  ++ RS +   E +  RS ++        DR  ++ DR  D+     ++  R R+R Y
Sbjct: 313 KERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDR--DREREKENERGRRRDRDY 370

Query: 147 DKV-DRERERDRERDRDRGYDKADREEGKERRH--------HRREELAPYPKSKKAVSRK 197
           DK    ERE++RER R+R  ++  R E +E++H        HR ++     + K + SR 
Sbjct: 371 DKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRS 430

Query: 198 DE 199
            E
Sbjct: 431 RE 432



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGH--DKSDRSHEKL-------DRGHDKSDRGHD 136
           ++   K + S  + EEK  +  DK DR H  DK D   EK        +R H    R  +
Sbjct: 385 SRERSKEQRSRGEVEEKKHKE-DKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRN 443

Query: 137 KSDRDRERGYDKVDR----ERERDRERDRDRGYDKADR-EEGKERRHHRREELAPYPKSK 191
              R R R  +K  +     +E+  +R R     + D  E+ K+R H   +E +      
Sbjct: 444 AGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRS 503

Query: 192 KAVSRKDEELDPMDPSSYSDAPR 214
           K  S K +  D  D S   D  R
Sbjct: 504 KERSHKRDHSDSKDQSDKHDRRR 526



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 32/171 (18%)

Query: 52  WYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEE---KLDRSHD 108
           W+    P   +P   N D              + T+  K  +     AEE    ++R   
Sbjct: 213 WFSTLFPRIPVPVQKNID------------QQIKTRPRKIKKDGKEGAEEIDRHVERRRS 260

Query: 109 KSDRGHDKSDRSHEKL-DRGHDKSDRGHDKSDRDRERGYDKV-------DRERERDRERD 160
           +S R      RS  +   R H +   G    DR+ ER  ++        +RE+ER R R 
Sbjct: 261 RSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRS 320

Query: 161 RDRGYDK---------ADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
            DRG ++           R   ++R+  RR+      K  +   R+D + D
Sbjct: 321 IDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYD 371



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 21/157 (13%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKS---DRGHDKSDRDRE 143
           +S  + R    D  ++ DR  +K +    + DR ++K +RG+++    +R  ++S   R 
Sbjct: 337 RSRSRSRDRKGDRRDR-DREREKENERGRRRDRDYDK-ERGNEREKERERSRERSKEQRS 394

Query: 144 RGYDKVDRERERDRERDRDRGYDKADREEGK--------ERRHHRREELAPYPK------ 189
           RG  +V+ ++ ++ + DR    DK D ++ K        ER+H  R       K      
Sbjct: 395 RG--EVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRS 452

Query: 190 SKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNE 226
            +K+   K+E  +  +  S S +   T S    K+ E
Sbjct: 453 KEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKRE 489



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHD-KSDRSHEKLDRGHDKSDRGHDKSDRDRER 144
           ++S  K +SS    E K ++S+ +S  G   ++D   +   R H  S     K  R +ER
Sbjct: 448 SRSRSKEKSSKHKNESK-EKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKER 506

Query: 145 GYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
            + K D    +D+    DR   ++  +E +E++H  ++E
Sbjct: 507 SH-KRDHSDSKDQSDKHDRRRSQSIEQESQEKQHKNKDE 544


>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 290

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 25/131 (19%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
           R  + D E++ +R  +K   G  +++   E+ DR  +K      + DRDR+R  +K +RE
Sbjct: 143 RERDRDREKERERQTEKDRDGQRETETERER-DREREKQKERETERDRDRQRDTEK-ERE 200

Query: 153 RERDRERDRDRGYD---------------------KADREEGKE--RRHHRREELAPYPK 189
           R+ DRERDR R                        + DR+ GKE  R   R+EE     K
Sbjct: 201 RQTDRERDRQRKTQTERQRETDREGERETDRRRERQRDRDRGKERDRERDRKEERKKERK 260

Query: 190 SKKAVSRKDEE 200
            ++   RK+++
Sbjct: 261 KERKKERKEKK 271



 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 93  RSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRER-GYDKVD 150
           R  + + E++ +R  ++  DR  D       + DR  D+  +   +  R+ +R G  + D
Sbjct: 171 RERDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREGERETD 230

Query: 151 RERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
           R RER R+RDR +  D+ +R+  +ER+  R++E     K KK   ++ E+
Sbjct: 231 RRRERQRDRDRGKERDR-ERDRKEERKKERKKERKKERKEKKKEEKRRED 279



 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 7/107 (6%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  ++ R    D E++ +R   ++DR  D+  ++  +  R  D+   G  ++DR RER  
Sbjct: 183 RETERDRDRQRDTEKERER---QTDRERDRQRKTQTERQRETDRE--GERETDRRRERQR 237

Query: 147 DKVDRERERDRERDRDRGYDK-ADREEGKERRHHRREELAPYPKSKK 192
           D+ DR +ERDRERDR     K   +E  KER+  ++EE     K +K
Sbjct: 238 DR-DRGKERDRERDRKEERKKERKKERKKERKEKKKEEKRREDKKRK 283



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKS-------DRGHDKS-DRSHEKLDRGHDKSDR-GHDK 137
           K   + R      E + DR  +K        DRG ++  DR  EK      + DR G  +
Sbjct: 107 KETNRNRDREKQTEIERDREREKQKGRERERDRGRERERDRDREKERERQTEKDRDGQRE 166

Query: 138 SDRDRERGYDKVDRERERDRERDRDRGYD-------KADREEGKERRHHRREELAPYPKS 190
           ++ +RER  ++ ++++ER+ ERDRDR  D       + DRE  ++R+     +     + 
Sbjct: 167 TETERERDRER-EKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREG 225

Query: 191 KKAVSRKDEELDPMDPSSYSDAPR 214
           ++   R+ E     D     D  R
Sbjct: 226 ERETDRRRERQRDRDRGKERDRER 249



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  ++ +    + E   DR  D       ++DR  ++  +   +  R   ++DR+ ER  
Sbjct: 173 RDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQR---ETDREGERET 229

Query: 147 DKV-DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK 192
           D+  +R+R+RDR ++RDR  D+ + E  KER+  R++E     K +K
Sbjct: 230 DRRRERQRDRDRGKERDRERDRKE-ERKKERKKERKKERKEKKKEEK 275



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 22/124 (17%)

Query: 88  SAKKLRSSNADAEEKLDRSHDKSDRGHDKS---DRSHEKLDRGHDKSDRGHDKSDRDRER 144
           S  +L S  +     L ++H  +D G D+    DR  EK ++  D+ DR   K DR+R R
Sbjct: 50  SRGRLGSQESPRSWGLGQAHKDAD-GDDRQRERDRVREKTEKERDR-DR---KRDRERRR 104

Query: 145 GYDKVDRER--------ERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSR 196
              + +R R        ERDRER++ +G ++ +R+ G+ER   R  E     K ++  + 
Sbjct: 105 KEKETNRNRDREKQTEIERDREREKQKGRER-ERDRGRERERDRDRE-----KERERQTE 158

Query: 197 KDEE 200
           KD +
Sbjct: 159 KDRD 162



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 11/125 (8%)

Query: 98  DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKS-----DRDRERGYDKVDRE 152
           D + + DR  +K+++  D+  +   +  R   +++R  D+      +RDRER     +++
Sbjct: 76  DRQRERDRVREKTEKERDRDRKRDRERRRKEKETNRNRDREKQTEIERDRER-----EKQ 130

Query: 153 RERDRERDRDRGYDK-ADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSD 211
           + R+RERDR R  ++  DRE+ +ER+  +  +     ++++   R+ E+    +     D
Sbjct: 131 KGRERERDRGRERERDRDREKERERQTEKDRDGQRETETERERDREREKQKERETERDRD 190

Query: 212 APRGT 216
             R T
Sbjct: 191 RQRDT 195



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 10/101 (9%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD----- 147
           R +  + E + DR  D+  +   +++R  E    G  ++DR  ++  RDR+RG +     
Sbjct: 193 RDTEKERERQTDRERDRQRK--TQTERQRETDREGERETDRRRERQ-RDRDRGKERDRER 249

Query: 148 --KVDRERERDRERDRDRGYDKADREEGKERRHHRREELAP 186
             K +R++ER +ER ++R   K + +  ++++    E ++P
Sbjct: 250 DRKEERKKERKKERKKERKEKKKEEKRREDKKRKWGEGISP 290


>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDK---SDRSHEKLDRGHDKSDRGHDKS-DRDRERGYDK 148
           R    + + + DR  DK DR  ++   +DR+ E+  +G  + D+  ++  DR+RER   +
Sbjct: 82  RQRQRERKRQTDRERDK-DRDRERKRETDRNRERNRKGGRERDKQTERERDRERERQRQR 140

Query: 149 VDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
            +RER+R RER R+   ++    E +ER+  R++E     K KK   ++ E+
Sbjct: 141 -ERERQRQRERKRETDRERQRWAEREERKKERKKERKKERKEKKKEEKRRED 191



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDK-----SDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
           +  ++ R +  + E + +R   +     +DR  DK DR  E+  R  D++   + K  R+
Sbjct: 64  RQRQRERETERETERQRERQRQRERKRQTDRERDK-DRDRER-KRETDRNRERNRKGGRE 121

Query: 142 RERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK--AVSRKDE 199
           R++   + +RER+R+RER R R  ++  + E K      R+  A   + KK     RK E
Sbjct: 122 RDK---QTERERDRERERQRQRERERQRQRERKRETDRERQRWAEREERKKERKKERKKE 178

Query: 200 ELDPMDPSSYSDAPRGTWSTGL 221
             +        +  +  W  G+
Sbjct: 179 RKEKKKEEKRREDKKRKWGEGI 200



 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRS--HEKLDRGHDKSDRGHDKSDRDRERGYDKVD 150
           R    D  ++ +R  D+     ++++R   H + DR H + DR   ++DR++ER     +
Sbjct: 7   RKRETDRGKETERERDRQRERENQTERENRHRQRDR-HRERDR---QTDREKER-----E 57

Query: 151 RERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
           R++ERDR+R R+R  ++    + + +R   R+      + K     +  E D
Sbjct: 58  RQKERDRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRETD 109



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 17/130 (13%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRG-----HDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
           +  K+      + E + DR  ++ ++      H + DR H + DR  D+      + +RD
Sbjct: 5   RERKRETDRGKETERERDRQRERENQTERENRHRQRDR-HRERDRQTDREKERERQKERD 63

Query: 142 RERGYDKV---------DRERERDRERDRDRGYDK-ADREEGKER-RHHRREELAPYPKS 190
           R+R  ++          +R+R+R+R+R  DR  DK  DRE  +E  R+  R       + 
Sbjct: 64  RQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRETDRNRERNRKGGRERD 123

Query: 191 KKAVSRKDEE 200
           K+    +D E
Sbjct: 124 KQTERERDRE 133



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
           R    D E++ +R  ++ DR   +   +  + +R  ++  +   K   DRER     D++
Sbjct: 46  RDRQTDREKERERQKER-DRQRQRERETERETERQRERQRQRERKRQTDRER-----DKD 99

Query: 153 RERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
           R+R+R+R+ DR  ++ +R+ G+ER   ++ E     + ++   R+ E     +    +D 
Sbjct: 100 RDRERKRETDRNRER-NRKGGRER--DKQTERERDRERERQRQRERERQRQRERKRETDR 156

Query: 213 PRGTWSTGLPKRNEAK 228
            R  W+    ++ E K
Sbjct: 157 ERQRWAEREERKKERK 172



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDK-SDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
           +  K+    N +   K  R  DK ++R  D+      + +R   +      ++DR+R+R 
Sbjct: 102 RERKRETDRNRERNRKGGRERDKQTERERDRERERQRQRERERQRQRERKRETDRERQRW 161

Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAP 186
            ++ +R++ER +ER ++R   K + +  ++++    E ++P
Sbjct: 162 AEREERKKERKKERKKERKEKKKEEKRREDKKRKWGEGISP 202



 Score = 29.6 bits (65), Expect = 2.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 152 ERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
           ER+R+R+R+ DRG  + +RE  ++R    + E     + +     +D + D
Sbjct: 2   ERQRERKRETDRG-KETERERDRQRERENQTERENRHRQRDRHRERDRQTD 51


>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
           sapiens]
          Length = 820

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 16/179 (8%)

Query: 89  AKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDK 148
           +K+ R  +   + + DR     DR    S     K  R  D+   G     R R +  ++
Sbjct: 16  SKEERKRSRTPDRERDR-----DRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAER 70

Query: 149 VDRERERDRERDRDRGYDKADREEGKERR--HHRREELAPYPKSKKAVSRKDEELDPMDP 206
             R +ER+R+++RDR     DR++   RR    +R  L+P  + K   SRKD +    + 
Sbjct: 71  ERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSP-GRGKDFKSRKDRDSKKDEE 129

Query: 207 SSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEASRTKQQD 265
             + D         L +    K   +   A P F  +            AEA + +QQ+
Sbjct: 130 DEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSK--------AEREAEALKRRQQE 180



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 115 DKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKA-----D 169
           DK DR          +S     + DRDR+R      ++R+R R RDR RG  ++      
Sbjct: 7   DKKDRDASPSKEERKRSRTPDRERDRDRDR-KSSPSKDRKRHRSRDRRRGGSRSRSRSRS 65

Query: 170 REEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKT 229
           +   +ERRH  RE        ++  ++KD + D        D  R + S G  K  +++ 
Sbjct: 66  KSAERERRHKERER-----DKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK 120

Query: 230 GADT 233
             D+
Sbjct: 121 DRDS 124



 Score = 36.2 bits (82), Expect = 0.030
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 15/129 (11%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
           ++S  + RS +A+ E +        +R  +K DR  +K   GH + D+   +S     RG
Sbjct: 57  SRSRSRSRSKSAERERRHKERERDKERDRNKKDRDRDK--DGH-RRDKDRKRSSLSPGRG 113

Query: 146 YD---KVDRERERDRERDRDRGYDKAD---------REEGKERRHHRREELAPYPKSKKA 193
            D   + DR+ ++D E +      KA          +++ +E    + + L+   +  +A
Sbjct: 114 KDFKSRKDRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEA 173

Query: 194 VSRKDEELD 202
           + R+ +E++
Sbjct: 174 LKRRQQEVE 182



 Score = 31.6 bits (70), Expect = 0.75
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 81  PNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDR 140
           P S+    AKK     A+A+ K      K++R  +   R  ++++      +    K  +
Sbjct: 141 PLSLEELLAKKKAEEEAEAKPKF---LSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197

Query: 141 DRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
            ++ G   ++  +ER+R   R+R   + +  E +E R   REE     KSK+  + K+  
Sbjct: 198 FQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE---KDKSKELHAIKERY 254

Query: 201 L 201
           L
Sbjct: 255 L 255


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +SA + RS +         S  +S RG D+  RS ++ DR  ++S     +  R R+R  
Sbjct: 11  RSASRGRSGSRSRSRS--PSDKRSKRGDDRRSRSRDR-DRRRERSRSRDKRRSRSRDRKR 67

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSR 196
            +  R RERDR R+R R   +  R      R  R    +P  KSKK  +R
Sbjct: 68  LRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENR 117



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 77  SPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHD 136
           SP D  S   K     RS + D + + +RS  +  R     DR   +  R  ++      
Sbjct: 26  SPSDKRS---KRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRER------ 76

Query: 137 KSDRDRERGYDKV-DRERERDRERD-RDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
             DR RER   +  DR R R R R  R R     ++ +  E R   +E+      SK+  
Sbjct: 77  --DRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKK 134

Query: 195 SRKDEELD 202
             KD++ D
Sbjct: 135 KDKDDKED 142



 Score = 36.2 bits (82), Expect = 0.030
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
           ++S  + R S + +     +  +   R  +K+D      ++  DK D+  D+ ++D    
Sbjct: 93  SRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDK-EDEKEKD-AGN 150

Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMD 205
           +D+   E E  + ++R   + +  R++  E     ++E+    + KK  S +D++ D  D
Sbjct: 151 FDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK-WSLEDDDDDEDD 209

Query: 206 PS 207
           P+
Sbjct: 210 PA 211



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 110 SDRGHDKS-DRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKA 168
           + RG   S  RS    D+   +S RG D+  R R       DR+R R+R R RD+   ++
Sbjct: 13  ASRGRSGSRSRSRSPSDK---RSKRGDDRRSRSR-------DRDRRRERSRSRDKRRSRS 62

Query: 169 -DREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEA 227
            DR+  +  R   R+      +S+    R+         S  S     +  T    R++ 
Sbjct: 63  RDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKE 122

Query: 228 KT 229
           KT
Sbjct: 123 KT 124



 Score = 31.6 bits (70), Expect = 0.75
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
           ++  K+LR S +   ++  R   +S     +  RS  +  R    S     K   +R R 
Sbjct: 62  SRDRKRLRRSRSRERDR-SRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRS 120

Query: 146 YDKVDR-ERERDRERDRDRGYDKADREEGKER 176
            +K D  E  +++++D+D      D+E+ KE+
Sbjct: 121 KEKTDGGESSKEKKKDKD------DKEDEKEK 146


>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
          Length = 1341

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 73   VSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSD 132
            + WL P   + +V K A+  R+  A   EK  +  ++ ++   + +   E+  +   +  
Sbjct: 1224 IYWL-PLTDSQIVQKEAE--RAERAKEREKRRKEQEEEEQKEREKEAERERNRQLEREKR 1280

Query: 133  RGHDKS-DRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRR 181
            R H +  DR+RER  ++   +R+RDRERDR+RG ++  R+  +  R   R
Sbjct: 1281 REHSRERDRERERERERDRGDRDRDRERDRERGRERDRRDTKRHSRSRSR 1330



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 109  KSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE---RERDRERDRDRGY 165
            +++R     +R   + ++  ++      +++R+R R  ++  R    RERDRER+R+R  
Sbjct: 1238 EAERAERAKEREKRRKEQEEEEQKEREKEAERERNRQLEREKRREHSRERDRERERERER 1297

Query: 166  DKADREEGKERRHHRREE 183
            D+ DR+  +ER   R  E
Sbjct: 1298 DRGDRDRDRERDRERGRE 1315



 Score = 35.0 bits (79), Expect = 0.068
 Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 114  HDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYD--KADRE 171
            H ++++  ++       ++R  +   R+R R   + DR++ R+  R R R  D  + +R 
Sbjct: 1130 HPRAEQREQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERA 1189

Query: 172  EGKERRHHRREELAPYPKSK 191
            + KE++  ++E+    P +K
Sbjct: 1190 KSKEKKSEKKEKAQEEPPAK 1209



 Score = 32.3 bits (72), Expect = 0.44
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 140  RDRERGYDKVDRERERDRER-DRDRGYDKADREEGKE-------RRHHRREELAPYPKSK 191
            R++ER   +   ERER+ ER +R R   + DR++ +E        R  RR+E A   KSK
Sbjct: 1136 REQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERA---KSK 1192

Query: 192  KAVSRKDEELDPMDPSSYSD 211
            +  S K E+     P+   D
Sbjct: 1193 EKKSEKKEKAQEEPPAKLLD 1212



 Score = 31.2 bits (69), Expect = 0.98
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 26/134 (19%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHE----KLDRGHDKSDRGHDKSD--------R 140
           R S++ +EEK D   +K  +G  +S R  +    KL  G   ++   D+           
Sbjct: 204 RKSSSISEEKGDSDDEKPRKGERRSSRVRQARAAKLSEGSQPAEEEEDQETPSRNLRVRA 263

Query: 141 DRERGYDKVDRERERDRERDRDRGYD------------KADREEGKERRHHRREELAPYP 188
           DR    ++ + E E + E D +   D            K  +EEG+E    + EE+    
Sbjct: 264 DRNLKTEEEEEEEEEEEEDDEEEEGDDEGQKSREAPILKEFKEEGEEIPRVKPEEM--MD 321

Query: 189 KSKKAVSRKDEELD 202
           +  K  S++ E L+
Sbjct: 322 ERPKTRSQEQEVLE 335


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 29/119 (24%), Positives = 53/119 (44%)

Query: 114 HDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEG 173
           H+  +R  E+      +      + DR+RER   + +RERE +R+++R R  ++ +RE  
Sbjct: 399 HNYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEEWERERA 458

Query: 174 KERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGAD 232
           K     R+       K ++    K +   P  PS  ++ P+   +T  P+   A    D
Sbjct: 459 KRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKD 517



 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 52/228 (22%), Positives = 82/228 (35%), Gaps = 45/228 (19%)

Query: 22  PEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDP 81
           P    + + E Y D   DYE  R       W            Y N           H+ 
Sbjct: 356 PRDVRDTVLEPYADPYYDYEIERF------WRG--------GQYENFRVQYTETEPYHNY 401

Query: 82  NSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
                +  ++ R    + E + DR  ++  R  ++ +R HE                 RD
Sbjct: 402 RERERERERENRQRERERERERDRERERRQRERER-EREHE-----------------RD 443

Query: 142 RERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKA-------- 193
           +ER   K + ERER +  ++DR +   DRE+ +E+   + +  +P P S++A        
Sbjct: 444 KERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAA 503

Query: 194 -----VSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAA 236
                V R DE  DP   S       G   +    R   KT A + +A
Sbjct: 504 TTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASA 551


>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
           sapiens]
          Length = 434

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 13/126 (10%)

Query: 77  SPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHD 136
           S H  +   ++S ++ R S+ +  +   RS  K  R H+  D+S +K  +  + +D+ H 
Sbjct: 36  SKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKK-HKSEEHNDKEHS 94

Query: 137 KSDRDRER---GYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKA 193
            SD+ RER     +  DR + ++R+  R R +    R   +ERRH  R       + KK+
Sbjct: 95  -SDKGRERLNSSENGEDRHKRKERKSSRGRSH---SRSRSRERRHRSRSR-----ERKKS 145

Query: 194 VSRKDE 199
            SR  E
Sbjct: 146 RSRSRE 151



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
           ++S +  R  + D   K  +S + +D+ H  SD+  E+L+   +  DR H + +R   RG
Sbjct: 65  SRSKEGRRHESKDKSSKKHKSEEHNDKEHS-SDKGRERLNSSENGEDR-HKRKERKSSRG 122

Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
                R   R R R+R       +R++ + R   R++  +   + KK+ SR  E
Sbjct: 123 -----RSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRE 171



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 87  KSAKKLRSS-NADAEEKLDRSHDK---SDRGHDKSDRSHEKLDRGHDKS-----DRGHDK 137
           KS+KK +S  + D E   D+  ++   S+ G D+  R   K  RG   S     +R H  
Sbjct: 78  KSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRS 137

Query: 138 SDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSR 196
             R+R++   +  RER++ R R R+R   ++   E K R   R    + +    ++ SR
Sbjct: 138 RSRERKKSRSR-SRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSR 195



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           KS++    S + + E+  RS  + +R   +S     K  R   +  +      R+R+R  
Sbjct: 118 KSSRGRSHSRSRSRERRHRSRSR-ERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRI 176

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKER 176
               R R R R R R R   ++   + K+R
Sbjct: 177 RSRSRSRSRHRHRTRSRSRTRSRSRDRKKR 206



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 129 DKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYP 188
           +K+    DK     E        +    R R R R   +    EG++ R   R +     
Sbjct: 14  EKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRH 73

Query: 189 KSKKAVSRKDEELDPMDPSSYSDAPRGTWSTG-----LPKRNEAKTGADTTAAGPLFQQR 243
           +SK   S+K +  +  D    SD  R   ++        KR E K+    + +    ++R
Sbjct: 74  ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 133

Query: 244 PYPSPGAVLRANAEASRTKQQ 264
            + S     + +   SR +++
Sbjct: 134 RHRSRSRERKKSRSRSRERKK 154


>gi|17999539 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Homo
           sapiens]
          Length = 1227

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 119 RSHEKLDRGHDKSDRGHDKSDRDRERGYDK-VDRERERDRERDRDRGYDKADREEGKERR 177
           R  E+  R H       ++ D  +E+  D+  DR+R+RD ERDR R   +++R+ G ER 
Sbjct: 133 RQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRD-ERDRSRHSSRSERDGGSERS 191

Query: 178 HHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLP---------KRNEAK 228
             R E  +P  + K A +      +  D S Y  + R  W +  P             + 
Sbjct: 192 SRRNEPESPRHRPKDAATPSRSTWEEED-SGYGSSRRSQWESPSPTPSYRDSERSHRLST 250

Query: 229 TGADTTAAGPLFQQRPYPSP 248
              D +  G      P P+P
Sbjct: 251 RDRDRSVRGKYSDDTPLPTP 270



 Score = 29.3 bits (64), Expect = 3.7
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           K  KK +S + D + K DR      R   +S+R     D G ++S R  ++ +  R R  
Sbjct: 152 KDWKKEKSRDRDYDRKRDRDERDRSRHSSRSER-----DGGSERSSR-RNEPESPRHRPK 205

Query: 147 DKVDRERERDRERDRDRGYDKADREEGKE-----RRHHRREELAPYPKSKKAVSRKDEEL 201
           D     R    E D   G  +  + E        R   R   L+   + +    +  ++ 
Sbjct: 206 DAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDDT 265

Query: 202 DPMDPS----SYSDAPRGTWST-----GLPKRNEAKTG 230
               PS     ++D  R   ST     G  +R E + G
Sbjct: 266 PLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEGEEG 303


>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
          Length = 520

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 45  LEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLD 104
           L G  PSW  + D S    YY   + D        D +    +   + R    + E + D
Sbjct: 360 LPGSAPSWPSLVDTSKQWDYYARREKDRDR---ERDRDRERDRDRDRERERTRERERERD 416

Query: 105 RSHDKSDRGHDKSD-RSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
            S   S    D+   R  E  +RG+++     +K +R RER      R RE++  R +  
Sbjct: 417 HSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER------RHREKEETRHKSS 470

Query: 164 GYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
             +   R E +E   HRR +   + KSK++   K+   +P      ++A
Sbjct: 471 RSNSRRRHESEEGDSHRRHK---HKKSKRSKEGKEAGSEPAPEQESTEA 516


>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
          Length = 588

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 45  LEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLD 104
           L G  PSW  + D S    YY   + D        D +    +   + R    + E + D
Sbjct: 428 LPGSAPSWPSLVDTSKQWDYYARREKDRDR---ERDRDRERDRDRDRERERTRERERERD 484

Query: 105 RSHDKSDRGHDKSD-RSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
            S   S    D+   R  E  +RG+++     +K +R RER      R RE++  R +  
Sbjct: 485 HSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER------RHREKEETRHKSS 538

Query: 164 GYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
             +   R E +E   HRR +   + KSK++   K+   +P      ++A
Sbjct: 539 RSNSRRRHESEEGDSHRRHK---HKKSKRSKEGKEAGSEPAPEQESTEA 584


>gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]
          Length = 594

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 45  LEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLD 104
           L G  PSW  + D S    YY   + D        D +    +   + R    + E + D
Sbjct: 434 LPGSAPSWPSLVDTSKQWDYYARREKDRDR---ERDRDRERDRDRDRERERTRERERERD 490

Query: 105 RSHDKSDRGHDKSD-RSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
            S   S    D+   R  E  +RG+++     +K +R RER      R RE++  R +  
Sbjct: 491 HSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER------RHREKEETRHKSS 544

Query: 164 GYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
             +   R E +E   HRR +   + KSK++   K+   +P      ++A
Sbjct: 545 RSNSRRRHESEEGDSHRRHK---HKKSKRSKEGKEAGSEPAPEQESTEA 590


>gi|4504487 histidine rich calcium binding protein precursor [Homo
           sapiens]
          Length = 699

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 24/162 (14%)

Query: 76  LSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGH 135
           +S H P   V K    LR    D+EE+ ++  D           SHE+ D   ++ ++G 
Sbjct: 461 MSHHPPGHTVVKDRSHLRKD--DSEEEKEKEEDPG---------SHEEDDESSEQGEKGT 509

Query: 136 DKSDRDRERGYDKVDRER----ERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSK 191
               RD+E   D+ D E       ++E + +   ++ + EE +ERR  R E  AP     
Sbjct: 510 HHGSRDQE---DEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGAPLSPDH 566

Query: 192 KAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADT 233
                ++EE          D PR T       R E   GA +
Sbjct: 567 SEEEEEEEE------GLEEDEPRFTIIPNPLDRREEAGGASS 602



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 105 RSHDKSDRGHDK---SDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRE--- 158
           RSH   D   D+   S+  H  L  GH    RGHD  D + E   ++ + E E   E   
Sbjct: 156 RSHSHQDEDEDEVVSSEHHHHILRHGH----RGHDGEDDEGEEEEEEEEEEEEASTEYGH 211

Query: 159 -RDRDRGYDKADREEGKERRHH 179
              R RG+   + E+  +  HH
Sbjct: 212 QAHRHRGHGSEEDEDVSDGHHH 233



 Score = 35.4 bits (80), Expect = 0.052
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 109 KSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKA 168
           +  RGH   D       R H  S R H   D D +   + V  E      R   RG+D  
Sbjct: 132 RGHRGHGSEDTEDSAEHRHHLPSHRSHSHQDEDED---EVVSSEHHHHILRHGHRGHDGE 188

Query: 169 DREEGKERRHHRREE 183
           D +EG+E      EE
Sbjct: 189 D-DEGEEEEEEEEEE 202



 Score = 30.0 bits (66), Expect = 2.2
 Identities = 18/86 (20%), Positives = 33/86 (38%)

Query: 98  DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDR 157
           + EE+ +     ++ GH          +   D SD  H      R +G+++ D + + D 
Sbjct: 195 EEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDD 254

Query: 158 ERDRDRGYDKADREEGKERRHHRREE 183
           + D D       R +    + H  EE
Sbjct: 255 DDDDDDDVSIEYRHQAHRHQGHGIEE 280



 Score = 29.3 bits (64), Expect = 3.7
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 104 DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
           +   D SD GH     SH    +GH++ D   D  D D     D  D   E   +  R +
Sbjct: 222 EEDEDVSD-GHHHHGPSHR--HQGHEEDDDDDDDDDDDD----DDDDVSIEYRHQAHRHQ 274

Query: 164 GYDKADREEGKERRHHR 180
           G+   + E+  +  HHR
Sbjct: 275 GHGIEEDEDVSDGHHHR 291



 Score = 29.3 bits (64), Expect = 3.7
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 94  SSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRER 153
           S      E+ D   D  D   D  D S E   + H     G ++ +   +  + +    R
Sbjct: 237 SHRHQGHEEDDDDDDDDDDDDDDDDVSIEYRHQAHRHQGHGIEEDEDVSDGHHHRDPSHR 296

Query: 154 ERDRERDRDRGYDKADREEGKE-RRH--HRREEL 184
            R  E D D   D    E G +  RH  HR+EE+
Sbjct: 297 HRSHEED-DNDDDDVSTEYGHQAHRHQDHRKEEV 329



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 98  DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDR 157
           + EE+ +   ++ +   +   ++H    RGH  S+   D SD     G     +  E D 
Sbjct: 191 EGEEEEEEEEEEEEASTEYGHQAHRH--RGHG-SEEDEDVSDGHHHHGPSHRHQGHEEDD 247

Query: 158 ERDRDRGYDKADREEGKERRH--HRRE 182
           + D D   D  D +   E RH  HR +
Sbjct: 248 DDDDDDDDDDDDDDVSIEYRHQAHRHQ 274


>gi|239747174 PREDICTED: hypothetical protein XP_002343931, partial
           [Homo sapiens]
          Length = 213

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 23/146 (15%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSD------- 139
           +  ++ + ++ + E + +R  D+  +   + +R  E+    H ++DR   K         
Sbjct: 60  RDREREKQTDREGERQRERERDRDRQRETERERDKERETDRHTETDRERQKQKEREMERV 119

Query: 140 RDRERGYDK-------VDRERERDRERDRDRGYDKADREEGKER----RHHRREELAPYP 188
           RDRER   K        DRE +R+RER  +R     +RE G+ER    RH  RE      
Sbjct: 120 RDREREKQKEMGRERQTDRETDRERERQAER-----ERETGRERKTEDRHRERERERKRE 174

Query: 189 KSKKAVSRKDEELDPMDPSSYSDAPR 214
           + +K  +++ E    M+     +  R
Sbjct: 175 RERKRETKERERHTDMERERQRETDR 200



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 13/129 (10%)

Query: 86  TKSAKKLRSSNADAEEKLDRSHD-KSDRGHDKSDRSHEK-LDRGHDKSDRGHDKSDRD-- 141
           T++  + R    + + + DR+ + K++  H + DR  ++  +R  D+      ++DR+  
Sbjct: 14  TETMDRQRERRRETDRERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGE 73

Query: 142 --RERGYDKVDRERERDRERDRDRGYDK---ADREEGKERRHHRREELAPYPKSKKAVSR 196
             RER  D+ DR+RE +RERD++R  D+    DRE  K++            + +K + R
Sbjct: 74  RQRERERDR-DRQRETERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGR 132

Query: 197 K---DEELD 202
           +   D E D
Sbjct: 133 ERQTDRETD 141



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 93  RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV--- 149
           R  +   E K +  H + DR  D+        DR  +K      +  R+RER  D+    
Sbjct: 29  RERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGERQRERERDRDRQRET 88

Query: 150 ----DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
               D+ERE DR  + DR   K    E +  R   RE+     + ++     D E
Sbjct: 89  ERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGRERQTDRETDRE 143



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
           E K +  H  ++   +  DR  E+      + DR  +    DR   + + DR+R+R+R R
Sbjct: 2   ESKTEGRHTHTET--ETMDRQRERRRETDRERDRAKESKTEDR---HSERDRQRDRERNR 56

Query: 160 DRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
           +RDR  ++  + + +  R   RE      +  +    K+ E D
Sbjct: 57  ERDRDREREKQTDREGERQRERERDRDRQRETERERDKERETD 99



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
           E + DR  D+      + +R   +  +  D+      +  R+RER  +  +RER  D ER
Sbjct: 133 ERQTDRETDRERERQAERERETGRERKTEDRHRERERERKRERERKRETKERERHTDMER 192

Query: 160 DRDRGYD-KADREEGKER 176
           +R R  D K DR+   ER
Sbjct: 193 ERQRETDRKRDRQRESER 210



 Score = 36.2 bits (82), Expect = 0.030
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 87  KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
           +  +++R    + ++++ R   ++DR   ++DR  E+      ++ R     DR RER  
Sbjct: 114 REMERVRDREREKQKEMGRER-QTDR---ETDRERERQAERERETGRERKTEDRHRERER 169

Query: 147 D-KVDRERERD-RERDRDRGYDKADREEGKERRHHRRE 182
           + K +RER+R+ +ER+R    ++  + E   +R  +RE
Sbjct: 170 ERKRERERKRETKERERHTDMERERQRETDRKRDRQRE 207


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 105 RSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRG 164
           R  D+ DR  ++ +RS E+      +  R  D+  R R R  ++  R RER +++DRDR 
Sbjct: 231 RDRDR-DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRK 289

Query: 165 YDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAP 213
              +   E   R   R+EEL            +    D  +PS   DAP
Sbjct: 290 RRSSRSRERARRERERKEEL------------RGGGGDMAEPSEAGDAP 326



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 38/128 (29%)

Query: 90  KKLRSSNADAEEKL---DRSHDKSDRGHDKSDRSHEKLDRGHDKSDR------------- 133
           ++ RS + D EE+    +RS DK      +S RS E+  R  ++ +              
Sbjct: 262 RRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSE 321

Query: 134 --------------GHDKSDRDRERGYDKVDRER------ERDRERDRDRGYDKADREEG 173
                         G D  D   E+G D+ DRER      ER+R RDRDR  D+ DRE  
Sbjct: 322 AGDAPPDDGPPGELGPDGPDGPEEKGRDR-DRERRRSHRSERERRRDRDRDRDR-DREHK 379

Query: 174 KERRHHRR 181
           +  R   R
Sbjct: 380 RGERGSER 387



 Score = 35.8 bits (81), Expect = 0.040
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 78  PHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDK 137
           PH       +  ++ RS   D E +  RS  +  R   +  RS +K +R   + +R  DK
Sbjct: 229 PHRDRDRDRERERRERSRERDKERERRRSRSRDRR---RRSRSRDKEERRRSR-ERSKDK 284

Query: 138 SDRDRE----RGYDKVDRERERDRERDRDRGYDKADREE 172
            DRDR+    R  ++  RERER +E  R  G D A+  E
Sbjct: 285 -DRDRKRRSSRSRERARRERER-KEELRGGGGDMAEPSE 321



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 91  KLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKS-DRGHDKSDRDRERGYDK 148
           +L     D  E+  R  D+  R   +S+R   + DR  D+  DR H + +R  ERG D+
Sbjct: 334 ELGPDGPDGPEEKGRDRDRERRRSHRSERERRR-DRDRDRDRDREHKRGERGSERGRDE 391



 Score = 32.3 bits (72), Expect = 0.44
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 111 DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADR 170
           ++G D+ DR   +  R   +  R  D+ DRDR+R + + +R  ER R+  R  G  + + 
Sbjct: 345 EKGRDR-DRERRRSHRSERERRRDRDR-DRDRDREHKRGERGSERGRDEARGGGGGQDNG 402

Query: 171 EEG 173
            EG
Sbjct: 403 LEG 405



 Score = 29.3 bits (64), Expect = 3.7
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 142 RERGYDKVDRERERD-------RERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
           R  G D   R  ER        R+RDRDR  ++ +R   +++   RR   +   + +   
Sbjct: 209 RHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRS 268

Query: 195 SRKDEELDPMDPSSYSDAPR 214
             K+E     + S   D  R
Sbjct: 269 RDKEERRRSRERSKDKDRDR 288


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,140,899
Number of Sequences: 37866
Number of extensions: 649703
Number of successful extensions: 8519
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 3049
Number of HSP's gapped (non-prelim): 2528
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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