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Search of human proteins with 74027253
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74027253 polyglutamine binding protein 1 [Homo sapiens]
(265 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74027257 polyglutamine binding protein 1 [Homo sapiens] 553 e-158
gi|74027255 polyglutamine binding protein 1 [Homo sapiens] 553 e-158
gi|74027253 polyglutamine binding protein 1 [Homo sapiens] 553 e-158
gi|74027247 polyglutamine binding protein 1 [Homo sapiens] 553 e-158
gi|5031957 polyglutamine binding protein 1 [Homo sapiens] 553 e-158
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 59 4e-09
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 59 6e-09
gi|14670268 RD RNA-binding protein [Homo sapiens] 58 7e-09
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 57 2e-08
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 54 1e-07
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 54 1e-07
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens] 54 1e-07
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 54 1e-07
gi|213385278 TNF receptor-associated factor 3 interacting protei... 53 2e-07
gi|20070262 TNF receptor-associated factor 3 interacting protein... 53 2e-07
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 53 3e-07
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 52 4e-07
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens] 52 5e-07
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 51 9e-07
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 51 1e-06
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 50 2e-06
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 50 2e-06
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 50 3e-06
gi|17999539 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Homo sapi... 49 3e-06
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens] 49 6e-06
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens] 49 6e-06
gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens] 49 6e-06
gi|4504487 histidine rich calcium binding protein precursor [Hom... 49 6e-06
gi|239747174 PREDICTED: hypothetical protein XP_002343931, parti... 48 8e-06
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 48 1e-05
>gi|74027257 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 553 bits (1425), Expect = e-158
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
Query: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
>gi|74027255 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 553 bits (1425), Expect = e-158
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
Query: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
>gi|74027253 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 553 bits (1425), Expect = e-158
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
Query: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
>gi|74027247 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 553 bits (1425), Expect = e-158
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
Query: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
>gi|5031957 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 553 bits (1425), Expect = e-158
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
Sbjct: 1 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC 60
Query: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
Sbjct: 61 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS 120
Query: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
Sbjct: 121 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR 180
Query: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
Sbjct: 181 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF 240
Query: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
QQRPYPSPGAVLRANAEASRTKQQD
Sbjct: 241 QQRPYPSPGAVLRANAEASRTKQQD 265
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 58.9 bits (141), Expect = 4e-09
Identities = 30/98 (30%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ ++ R D E DR HD+ + DR E+ +R ++ +R ++ +R+RER
Sbjct: 713 REREREREKERDRERDRDRDHDRERERERERDREKER-EREREERERERER-ERERERER 770
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREEL 184
++ +RER R+R+++R+R D D+++G++ R +REE+
Sbjct: 771 ER-ERERARERDKERERQRDWEDKDKGRDDRREKREEI 807
Score = 57.4 bits (137), Expect = 1e-08
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEK-LDRGHDKSDRGHDKSDRDRERG 145
+ ++ R + E +L+R + + +R E+ DR HD+ + DR++ER
Sbjct: 691 RERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKERE 750
Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
++ +RERER+RER+R+R ++ +RE +ER R + K K R+++
Sbjct: 751 REREERERERERERERERERER-ERERARERDKERERQRDWEDKDKGRDDRREK 803
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 93 RSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDR 151
R+ D E + DR ++ +R D+ +L+R + + +RDRER DR
Sbjct: 675 RARERDRERERDRERERERERERDREREKERELERERAREREREREKERDRER-----DR 729
Query: 152 ERERDRERDRDRGYDK-----ADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
+R+ DRER+R+R D+ +REE + R RE + ++ +D+E
Sbjct: 730 DRDHDRERERERERDREKEREREREERERERERERERERERERERERARERDKE 783
Score = 52.0 bits (123), Expect = 5e-07
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDK-VDRERERDRE 158
E ++DR D+ D + DR E+ D+ + +RDRER ++ ++RER R+RE
Sbjct: 662 ERRVDRVDDRRDERARERDRERER-----DRERERERERERDREREKERELERERARERE 716
Query: 159 RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
R+R++ + DRE ++R H R E +K R+ EE
Sbjct: 717 REREK---ERDRERDRDRDHDRERERERERDREKEREREREE 755
Score = 49.3 bits (116), Expect = 3e-06
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 96 NADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERER 155
+ + + + +R D+ + +++L+R + +R D+ D R+ + DRERER
Sbjct: 626 HGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRERER 685
Query: 156 DRERDRDRGYDKADREEGKER---RHHRREELAPYPKSKKAVSRKDEELD 202
DRER+R+R ++ DRE KER R RE K + +D + D
Sbjct: 686 DRERERERERER-DREREKERELERERAREREREREKERDRERDRDRDHD 734
Score = 44.7 bits (104), Expect = 9e-05
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRER-ERDRE 158
+ +R H + DR ++ H + ++ +R ER D+VD R ER RE
Sbjct: 619 DSSFERRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARE 678
Query: 159 RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
RDR+R D+ +RE +ER R E + ++A R+ E
Sbjct: 679 RDRERERDR-ERERERERERDREREKERELERERARERERE 718
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
E S D+ D S RS + DR D DR +ER + DRERER+R
Sbjct: 1258 EPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRD 1317
Query: 160 DRDRGYDK-ADRE--EGKERRHHRREELAPYPKSKKAVSRKDEEL--DPMDPSSYSDAPR 214
R R +D+ AD++ ++R R E ++ + R+ E L D ++ D R
Sbjct: 1318 TRQREWDRDADKDWPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRDR 1377
Query: 215 GTWSTGLP--KRNEAK 228
S+ + KR EAK
Sbjct: 1378 TFESSQIESVKRCEAK 1393
Score = 42.4 bits (98), Expect = 4e-04
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 77 SPHDPNSVVTKSAKK--------LRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGH 128
SP+ +S+ + K+ +R E+ +SH DR H++ + + K DR
Sbjct: 372 SPYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQSH---DRRHERREDTRGKRDR-- 426
Query: 129 DKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR-REELAPY 187
+K R + ++D+ D D RD RDR D DR E ++ R R E+ Y
Sbjct: 427 EKDSREEREYEQDQSSSRDHRDDREPRD-GRDRRDARDTRDRRELRDSRDMRDSREMRDY 485
Query: 188 PKSKKAVSRKDEELDPMDPSSYSDA 212
+ K E DP D S DA
Sbjct: 486 SRDTK------ESRDPRDSRSTRDA 504
Score = 42.0 bits (97), Expect = 6e-04
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
R D E++ +R ++ +R ++ + +R +++ R DK +R+R+R ++ D+
Sbjct: 739 RERERDREKEREREREERERERERERERERERERERERA-RERDK-ERERQRDWEDKDKG 796
Query: 153 RERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSD 211
R+ RE+ + D+ R+ ER+ +R P +++ R+ E D + D
Sbjct: 797 RDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYNSGD 855
Score = 38.5 bits (88), Expect = 0.006
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 93 RSSNADAEEKL---DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
RS + D+ ++L DR +R ++ D + DR DK + DR RER
Sbjct: 1289 RSGSFDSRDRLQERDRYEHDRERERERRDTRQREWDRDADKDWPRNRDRDRLRER----- 1343
Query: 150 DRERERD--RERDRDRG---YDKADREEGKER 176
+RERERD R+ DR+R D +R+ ++R
Sbjct: 1344 ERERERDKRRDLDRERERLISDSVERDRDRDR 1375
Score = 35.0 bits (79), Expect = 0.068
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 9/147 (6%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
++S + D K DR D + + D+S + D D + RDR
Sbjct: 407 SQSHDRRHERREDTRGKRDREKDSREEREYEQDQSSSR-----DHRDDREPRDGRDRRDA 461
Query: 146 YDKVDRERERDRERDRD----RGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEEL 201
D DR RD RD R Y + +E R + Y + + + E+
Sbjct: 462 RDTRDRRELRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRKEDT 521
Query: 202 DPMDPSSYSDAPRGTWSTGLPKRNEAK 228
P + SY S+ RNE++
Sbjct: 522 YPEESRSYGRNHLREESSRTEIRNESR 548
Score = 34.7 bits (78), Expect = 0.088
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 79 HDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKS 138
HD + + R D+ E+ + D+S + DR G D+ D +
Sbjct: 410 HDRRHERREDTRGKRDREKDSREEREYEQDQSSSRDHRDDREPRD---GRDRRDARDTRD 466
Query: 139 DRDRERGYDKVDRERERDRERDRDRGYDKADREEGKE---------RRHHRREELAPYPK 189
R+ D D RD RD D D ++ R HR+E+ YP+
Sbjct: 467 RRELRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRKED--TYPE 524
Query: 190 SKKAVSR 196
++ R
Sbjct: 525 ESRSYGR 531
Score = 34.3 bits (77), Expect = 0.12
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 106 SHDKSDRGHD--KSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
SH + HD ++ S+ + DR ++ +R D+ R+ +++ ER+R R+RD+
Sbjct: 585 SHSSNSNYHDSWETRSSYPERDRYPERDNR-----DQARDSSFERRHGERDRRDNRERDQ 639
Query: 164 GYDKADREEGKE---RRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPR 214
R +G+ R RREE + + R+DE D D R
Sbjct: 640 RPSSPIRHQGRNDELERDERREE----RRVDRVDDRRDERARERDRERERDRER 689
Score = 28.5 bits (62), Expect = 6.3
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
E + + +D+ R + EK RG S S+ + ++ ERDR
Sbjct: 550 ESRSEIRNDRMGRSRGRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYP 609
Query: 160 DRDRGYDKADREEGKERRHHRRE 182
+RD D+A R+ ERRH R+
Sbjct: 610 ERD-NRDQA-RDSSFERRHGERD 630
Score = 28.1 bits (61), Expect = 8.3
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 25/173 (14%)
Query: 77 SPHDPNSVVTKSA-KKLRSSNADAEEKLDRSHD-KSDRGHDKSDRSH-------EKLDRG 127
SP +S + SA KK R ++A + LD+ + K+++ K R+ E + G
Sbjct: 218 SPKRKSSPKSSSASKKDRKTSAVSSPLLDQQRNSKTNQSKKKGPRTPSPPPPIPEDIALG 277
Query: 128 HDKSDRGHDKSDRDRERGYDKVDRERERDRE---RDRDRGYDKADREEGK-ERRHHRR-- 181
++ + DR E+ D DR R+ +R+ RD+ R A + RHH
Sbjct: 278 KKYKEK-YKVKDRIEEKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSSS 336
Query: 182 ------EELAPYPKSKKAVSRK-DEELDPMDPSSYSDAPRGTWSTGLPKRNEA 227
+ +P P+ K+ S L P P S +P + S P+R ++
Sbjct: 337 QSGSSIQRHSPSPRRKRTPSPSYQRTLTP--PLRRSASPYPSHSLSSPQRKQS 387
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 58.5 bits (140), Expect = 6e-09
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 91 KLRSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
K R + D E DR ++S DR D+S + DR ++ + +R+RER +
Sbjct: 355 KERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERER---ER 411
Query: 150 DRERERDRERDRDRGYD-KADREEGKERRHHRRE 182
+RERER+RER+R+R D K DREE +E + RR+
Sbjct: 412 EREREREREREREREKDKKRDREEDEEDAYERRK 445
Score = 57.8 bits (138), Expect = 1e-08
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
K ++ R + D + +R D+ DR D+ DR D+S R +KS RDRER
Sbjct: 339 KERERERERDRDRDRTKERDRDR-DRERDRDRDRERSSDRNKDRS-RSREKS-RDRER-- 393
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
+RERER+RER+R+R ++ +RE +ER R E K KK +DEE
Sbjct: 394 ---ERERERERERERERERER-ERERERERERERERE-----KDKKRDREEDEE 438
Score = 55.5 bits (132), Expect = 5e-08
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 62 LPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSH 121
+PY D+ + D ++++ K R D +KL+ K ++ + ++
Sbjct: 254 IPYPLITKEDINAIEMEEDKRDLISREISKFR----DTHKKLEEEKGKKEKERQEIEKER 309
Query: 122 EKLDRGHDKS-DRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDK-ADREEGKERRHH 179
+ +R ++ +R + +R+RER +K ++ERER+RERDRDR K DR+ +ER
Sbjct: 310 RERERERERERERREREREREREREREK-EKERERERERDRDRDRTKERDRDRDRERDRD 368
Query: 180 RREELAPYPKSKKAVSRK 197
R E + ++ SR+
Sbjct: 369 RDRERSSDRNKDRSRSRE 386
Score = 53.9 bits (128), Expect = 1e-07
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 90 KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
++ R + E + +R +K + DR ++ DR D+ DRDRER D+
Sbjct: 320 RERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDR-DRDRERSSDRN 378
Query: 150 -----DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPM 204
RE+ RDRER+R+R ++ E + R RE + ++ ++D E D
Sbjct: 379 KDRSRSREKSRDREREREREREREREREREREREREREREREREREREKDKKRDREEDEE 438
Query: 205 D 205
D
Sbjct: 439 D 439
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 76 LSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGH 135
++P P ++TK D + + R K H K + K ++ + ++
Sbjct: 250 VAPLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKER 309
Query: 136 DKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
+ +R+RER ++ +RERER+RER+R++ ++ +RE ++R R +E
Sbjct: 310 RERERERERERERREREREREREREREKEKER-ERERERDRDRDRTKE 356
Score = 33.5 bits (75), Expect = 0.20
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 87 KSAKKLRSSNADAEEKLDR---SHDKSDRGHDKSDRSHEKLDRGHDKS---------DRG 134
K +KLR A +E+L K R ++K E+ R K D
Sbjct: 445 KLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDYD 504
Query: 135 HDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
D+ D RG R R+R++E + D K ++EE +E R E P P ++ +
Sbjct: 505 DDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAE--L 562
Query: 195 SRKDEELD 202
R ++E +
Sbjct: 563 QRMEQEAE 570
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKS-DRGHDKSDR-SHEKLDRGHDKSDRGHDKSDRDRER 144
+ ++ R + E + +R DK DR D+ D KL+R + + + + ++ E
Sbjct: 407 REREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEI 466
Query: 145 GYDKVDRERERDRERDRDRGYDKA 168
K RE E++ ER+ +R + A
Sbjct: 467 RERKKTREYEKEAEREEERRREMA 490
>gi|14670268 RD RNA-binding protein [Homo sapiens]
Length = 380
Score = 58.2 bits (139), Expect = 7e-09
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 88 SAKKLRSSNADAEEKL-----DRSHDKSDRGHDKSDRSHEKLDRGHDKS-DRGHDKS--- 138
S+ +LR D EE D D G+++ +H +S DR H+++
Sbjct: 139 SSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDR 198
Query: 139 DRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR-REELAPYPKSKKAVSRK 197
DRDRER D+ DR+R+R+R+RDRDR D+ DRE ++R R R+ P+ +S R+
Sbjct: 199 DRDRERDRDR-DRDRDRERDRDRDRDRDR-DRERDRDRERDRDRDREGPFRRSDSFPERR 256
Score = 49.7 bits (117), Expect = 3e-06
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 SNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKS-DRGHDKSDRDRERGYDKVDRER 153
+++ A RS D+S + DR E+ DR D+ DR D+ DRDR+R D+ +R+R
Sbjct: 176 AHSSASPPRSRSRDRSHERNRDRDRDRER-DRDRDRDRDRERDR-DRDRDRDRDR-ERDR 232
Query: 154 ERDRERDRDRGYDKADREEGKERRHHRR 181
+R+R+RDRDR + ERR R+
Sbjct: 233 DRERDRDRDREGPFRRSDSFPERRAPRK 260
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 56.6 bits (135), Expect = 2e-08
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
K A++ R+S + E +R ++ DR D+ DR ++ +R D+ + + DR+ ER
Sbjct: 244 KQAERERASERETERDKERERER-DRDRDR-DRRQKERERQTDRKRQRRTERDRETER-- 299
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKER-RHHRREELAPYPKSKKAVSRKDEELD 202
K +R+RER+RER+R+R K +RE +ER R +RE K ++ ++ E+D
Sbjct: 300 -KRERQRERERERERNR---KRERERERERERERQRETERDREKERERKRKRQTEMD 352
Score = 49.7 bits (117), Expect = 3e-06
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHD---KSDRDRE 143
+ ++ R + E K + H + R ++ + + +R ++DR D K++R+RE
Sbjct: 185 RQERRERERQREKENKTEDRHSERGRERERERETETETERKR-QTDRERDRQRKTERERE 243
Query: 144 RGYDK-------VDRERERDRERDRDRGYDK--ADREEGKERRHHRREELAPYPKSKKAV 194
+ ++ +R++ER+RERDRDR D+ +RE +R+ RR E + K+
Sbjct: 244 KQAERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTERDRETERKRER 303
Query: 195 SRKDE 199
R+ E
Sbjct: 304 QRERE 308
Score = 48.5 bits (114), Expect = 6e-06
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 93 RSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKS-DRGHDKS-----DRDRERG 145
R D E++ +R D+ DR +K ++ +R ++ +RG D+ +R+R+R
Sbjct: 95 RERQRDREKERERQTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRD 154
Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
+K +RER+ DRER R ++ E ++ R RRE K K R E
Sbjct: 155 AEK-ERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRHSE 207
Score = 48.5 bits (114), Expect = 6e-06
Identities = 22/97 (22%), Positives = 49/97 (50%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ ++ R N E + +R ++ + + DR E+ + +++ +++ + G
Sbjct: 305 RERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGR 364
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
+ +RERER+RERDR ++ +RE ++R + E
Sbjct: 365 RQAERERERERERDRQSAREREERERDRDRDRQKERE 401
Score = 47.8 bits (112), Expect = 1e-05
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
R DAE++ +R ++DR + + + +R +K+ + + +R RE+ DR
Sbjct: 149 RERQRDAEKERER---QTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRH 205
Query: 153 RERDRERDRDRGYD-------KADREEGKERRHHR-REELAPYPKSKKAVSRKDEE 200
ER RER+R+R + + DRE ++R+ R RE+ A ++ + + +D+E
Sbjct: 206 SERGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKE 261
Score = 47.0 bits (110), Expect = 2e-05
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
R N E + R +++R D+ + DR H K DR H + RDRE+ +RE
Sbjct: 54 RERNRQKERERRREKRQTERETDRKRERRREKDR-HRKRDR-HRERQRDREK-----ERE 106
Query: 153 RERDRERDRDRGYDKADREEGKERRHHRREE 183
R+ DRERDR R ++ +R++ +ER R E
Sbjct: 107 RQTDRERDRQREKER-NRQKERERETEREGE 136
Score = 46.6 bits (109), Expect = 2e-05
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDK-SDRDRER 144
+ A+K R D E + ++ +R +K+ + + +R +K ++ D+ S+R RER
Sbjct: 153 RDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRHSERGRER 212
Query: 145 GYDK-----VDRERERDRERDRDRGYDK-----ADREEGKERRHHRREE 183
++ +R+R+ DRERDR R ++ A+RE ER R +E
Sbjct: 213 ERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKE 261
Score = 45.4 bits (106), Expect = 5e-05
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 80 DPNSVVTKSAKKLRSSNADAEEK--LDRSHD---KSDRGHDKSDRSHEKLDRGHDKSDRG 134
D +S + ++ R + + E K DR D K++R +K +R ++
Sbjct: 203 DRHSERGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKER 262
Query: 135 HDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
+ DRDR+R + +RER+ DR+R R D+ + E +ER+ R E K ++
Sbjct: 263 ERERDRDRDRDRRQKERERQTDRKRQRRTERDR-ETERKRERQRERERERERNRKRERER 321
Query: 195 SRKDE 199
R+ E
Sbjct: 322 ERERE 326
Score = 45.1 bits (105), Expect = 7e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 90 KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV 149
++ R + + + K +R +K DR H K DR E R D+ ++DR+R+R +K
Sbjct: 66 REKRQTERETDRKRERRREK-DR-HRKRDRHRE---RQRDREKERERQTDRERDRQREKE 120
Query: 150 ---DRERERDRERDRDRGYDKADREEGKERRHHRRE 182
+ERER+ ER+ +RG D+ + +G+ R +R+
Sbjct: 121 RNRQKERERETEREGERGRDR--QTDGQRERERQRD 154
Score = 45.1 bits (105), Expect = 7e-05
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 99 AEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKS-DRDRERGYDKV-DRERERD 156
A E+ +R D+ + +R EK G ++++ ++ DR+ ERG ++ +RE+++
Sbjct: 382 AREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGRERGREREKQKG 441
Query: 157 RERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKD 198
RERDR+R + DR+ G++R+ P ++ V + D
Sbjct: 442 RERDRER---QTDRQAGRQRKRSTLYVNPPPRTARSGVVQSD 480
Score = 44.7 bits (104), Expect = 9e-05
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKL---DRGHDKSDRGHDKSDRDRE 143
+ ++ R + E + R D+ K++R EK +R ++ + +R+R+
Sbjct: 208 RGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKERERERD 267
Query: 144 RGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
R D+ R++ER+R+ DR R E + +R +RE +++K ++ E
Sbjct: 268 RDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERE 324
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
R AE + +R ++ DR +R + DR D+ ++++DR+ G + +++
Sbjct: 361 REGRRQAERERERERER-DR-QSAREREERERDRDRDRQKERERQTEKDRD-GQRETEKQ 417
Query: 153 RERDRERDRDRGYDKA---DREEGKERRHHRREE 183
RER+++R+ +RG ++ ++++G+ER R+ +
Sbjct: 418 REREKDRESERGRERGREREKQKGRERDRERQTD 451
Score = 43.5 bits (101), Expect = 2e-04
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ K+ R + D E R+ G +++R E+ +S R ++ +RDR+R
Sbjct: 341 RERKRKRQTEMDRE----RNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDR 396
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
K +RER+ +++RD R +K RE K+R R E + +K R E
Sbjct: 397 QK-ERERQTEKDRDGQRETEK-QREREKDRESERGRERGREREKQKGRERDRE 447
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ +K R+ + E + +R + +RG D+ + +R D ++DR+R+R
Sbjct: 115 RQREKERNRQKERERETER---EGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQT 171
Query: 147 DK---VDRERE------RDRERDRDRGYDKADR--EEGKERRHHRREE 183
++ +RERE R+RER R++ DR E G+ER R E
Sbjct: 172 ERNRQKEREREKNRQERRERERQREKENKTEDRHSERGRERERERETE 219
Score = 42.0 bits (97), Expect = 6e-04
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 98 DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV-------D 150
+ E + DR + +++R E+ R ++ + K +R+RER ++ D
Sbjct: 278 ERERQTDRKRQRRTERDRETERKRER-QRERERERERNRKRERERERERERERQRETERD 336
Query: 151 RERERDRERDRDRGYDK-ADREEGKE-RRHHRREELAPYPKSKKAVSRKDEELDPMDPSS 208
RE+ER+R+R R D+ +R+ G+E RR RE + +++ ++E D
Sbjct: 337 REKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDR 396
Query: 209 YSDAPRGT 216
+ R T
Sbjct: 397 QKERERQT 404
Score = 41.6 bits (96), Expect = 7e-04
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 88 SAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD 147
S ++ S + L ++H +D G D+ ++ +R +K + +DR RER +
Sbjct: 27 SRRRPGSQESPRRRGLGQAHKDAD-GDDRERNRQKERERRREKRQTERE-TDRKRERRRE 84
Query: 148 KV-----DRERER--DRERDRDRGYDK-ADREEGKERRHHRREE 183
K DR RER DRE++R+R D+ DR+ KER + E
Sbjct: 85 KDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKERE 128
Score = 41.6 bits (96), Expect = 7e-04
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ ++ R E + DR ++ + +++ E+ +R + R + +R+RER
Sbjct: 319 RERERERERERQRETERDREKERERKRKRQTEMDRER-NRQTGREGRRQAERERERERER 377
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
D+ +RERDRDR K + ++ R +RE + K S + E
Sbjct: 378 DRQSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGRE 431
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 90 KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD-K 148
K+ R + D E + R + + +R E+ +R ++ +++RDRE+ + K
Sbjct: 286 KRQRRTERDRETERKRERQRERERERERNRKRER-ERERERERERQRETERDREKERERK 344
Query: 149 VDRERERDRERDRDRGYD---KADREEGKERRHHRR 181
R+ E DRER+R G + +A+RE +ER R+
Sbjct: 345 RKRQTEMDRERNRQTGREGRRQAERERERERERDRQ 380
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 87 KSAKKLRSSNADAEEKLDRSHD---KSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRE 143
+ ++ R + + E DR D + +R D + DR + + + +R+RE
Sbjct: 123 RQKERERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKERERE 182
Query: 144 RG-YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
+ ++ +RER+R++E + + + RE +ER E ++ RK E
Sbjct: 183 KNRQERRERERQREKENKTEDRHSERGRERERERETETETERKRQTDRERDRQRKTE 239
Score = 38.1 bits (87), Expect = 0.008
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 90 KKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHE-KLDRGHDKSDRGHDKSDRDRERGYD- 147
K+ R + E + +R ++ + +R E + DR ++ + +++ DRER
Sbjct: 300 KRERQRERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQT 359
Query: 148 --------KVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
+ +RERER+R+R R ++ +R+ ++R+ R +
Sbjct: 360 GREGRRQAERERERERERDRQSAREREERERDRDRDRQKERERQ 403
Score = 36.6 bits (83), Expect = 0.023
Identities = 21/73 (28%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEK-LDRGHDKSDRGHDKS-DRDRERGYDKVD 150
R + D +++ +R +K G ++++ E+ DR +S+RG ++ +R++++G ++ D
Sbjct: 390 RDRDRDRQKERERQTEKDRDGQRETEKQREREKDR---ESERGRERGREREKQKGRER-D 445
Query: 151 RERERDRERDRDR 163
RER+ DR+ R R
Sbjct: 446 RERQTDRQAGRQR 458
Score = 35.8 bits (81), Expect = 0.040
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 126 RGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYD-KADREEGKERRHHRREEL 184
RG ++ + D DR+R R ++ R +R ER+ DR + + +++ ++R HR +
Sbjct: 40 RGLGQAHKDADGDDRERNRQKERERRREKRQTERETDRKRERRREKDRHRKRDRHRERQR 99
Query: 185 APYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRP 244
+ ++ R+ + + + + R T E + G D G ++R
Sbjct: 100 DREKERERQTDRERDRQREKERNRQKERERET-------EREGERGRDRQTDGQRERER- 151
Query: 245 YPSPGAVLRANAEASRTKQQD 265
+ +AE R +Q D
Sbjct: 152 --------QRDAEKERERQTD 164
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 54.3 bits (129), Expect = 1e-07
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 38/215 (17%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKL---DRGHDKSDRGHDKSD-RD 141
++S + RS N + DR KS H K +S E+ R H + R + ++
Sbjct: 329 SQSKHRSRSHNRSRSRQKDRRRSKSP--HKKRSKSRERRKSRSRSHSRDKRKDTREKIKE 386
Query: 142 RERGYDKVDRERER------------------DRERDRDRGYDK-ADREEGKERRHHR-- 180
+ER +K DRE+ER D+ER++DR DK DRE +E+ H +
Sbjct: 387 KERVKEK-DREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDR 445
Query: 181 -REELAPYPKSKKAVSRKDEELDP---------MDPSSYSDAPRGTWSTGLPKRNEAKTG 230
+E+ K K+ + +E+D P SY+ + R S+ +R +++
Sbjct: 446 DKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSS 505
Query: 231 ADTTAAGPLFQQRPYPSPGAVLRANAEASRTKQQD 265
+ + +++ SP R + R K++D
Sbjct: 506 SRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERD 540
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 88 SAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD 147
++++ RSS+ + + RS +S R R + S R +K D+ RE+ D
Sbjct: 486 ASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR-----SPSPRSRNKKDKKREKERD 540
Query: 148 KVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMD 205
+ RER+R + + D GKE+ L +K+ S +E+D D
Sbjct: 541 HISERRERERSTSMRKSSNDRD---GKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKD 595
Score = 40.0 bits (92), Expect = 0.002
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 14/142 (9%)
Query: 87 KSAKKLRSSNADAEEKLD-------RSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSD 139
K +K RS D + K D RS++ S R S + R +S R
Sbjct: 457 KEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIK 516
Query: 140 RDRERGYDKVDR-ERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKD 198
R R R ++++ RE++RD ++ +RE R + K + S K+
Sbjct: 517 RKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKE 576
Query: 199 EELDPMDPSSYS------DAPR 214
+E + SS S DAPR
Sbjct: 577 KEHNKEPDSSVSKEVDDKDAPR 598
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 54.3 bits (129), Expect = 1e-07
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 38/215 (17%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKL---DRGHDKSDRGHDKSD-RD 141
++S + RS N + DR KS H K +S E+ R H + R + ++
Sbjct: 213 SQSKHRSRSHNRSRSRQKDRRRSKSP--HKKRSKSRERRKSRSRSHSRDKRKDTREKIKE 270
Query: 142 RERGYDKVDRERER------------------DRERDRDRGYDK-ADREEGKERRHHR-- 180
+ER +K DRE+ER D+ER++DR DK DRE +E+ H +
Sbjct: 271 KERVKEK-DREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDR 329
Query: 181 -REELAPYPKSKKAVSRKDEELDP---------MDPSSYSDAPRGTWSTGLPKRNEAKTG 230
+E+ K K+ + +E+D P SY+ + R S+ +R +++
Sbjct: 330 DKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSS 389
Query: 231 ADTTAAGPLFQQRPYPSPGAVLRANAEASRTKQQD 265
+ + +++ SP R + R K++D
Sbjct: 390 SRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERD 424
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 88 SAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD 147
++++ RSS+ + + RS +S R R + S R +K D+ RE+ D
Sbjct: 370 ASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR-----SPSPRSRNKKDKKREKERD 424
Query: 148 KVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMD 205
+ RER+R + + D GKE+ L +K+ S +E+D D
Sbjct: 425 HISERRERERSTSMRKSSNDRD---GKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKD 479
Score = 40.0 bits (92), Expect = 0.002
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 14/142 (9%)
Query: 87 KSAKKLRSSNADAEEKLD-------RSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSD 139
K +K RS D + K D RS++ S R S + R +S R
Sbjct: 341 KEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIK 400
Query: 140 RDRERGYDKVDR-ERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKD 198
R R R ++++ RE++RD ++ +RE R + K + S K+
Sbjct: 401 RKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKE 460
Query: 199 EELDPMDPSSYS------DAPR 214
+E + SS S DAPR
Sbjct: 461 KEHNKEPDSSVSKEVDDKDAPR 482
>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 53.9 bits (128), Expect = 1e-07
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKS---DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRE 143
+ K+ R + D E + +R ++ DR +K + + G DK + DRDRE
Sbjct: 104 RDRKRERWGDRDRETETERQEERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDRE 163
Query: 144 RGYDKVDRERERDRE----------RDRDRGYDKADREEGKERRHHR-----REELAPYP 188
R + +R R+R+RE RDR+R +K DRE ++R+ R RE
Sbjct: 164 REMGETERYRDRERERQKQRETRRDRDRERQREKEDRERDRDRQKEREKDRYRERETGRD 223
Query: 189 KSKKAVSRKDEELDPMDPSSYSDAPRGTW 217
+ K+ + E D D D G W
Sbjct: 224 RDKERDRERQREKD-RDRQKAIDCVPGRW 251
Score = 45.8 bits (107), Expect = 4e-05
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 118 DRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV-----DRERERDRERDRDRGYDKADREE 172
+R ++ H + DR +K DRDR+R D+ DR+R+R+R DRDR + +EE
Sbjct: 67 ERQRKRAKERHREKDREIEK-DRDRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEE 125
Query: 173 GKERRHHRREELAPYPKSKKAVSRKDEELD 202
+ +R +RE+ + ++ KD E++
Sbjct: 126 RERQRDRKREKDRERQRQREIGIDKDREIE 155
Score = 45.4 bits (106), Expect = 5e-05
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 84 VVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRE 143
+ T+ + + E DR ++ + + DR E R +K DR D+ DR +E
Sbjct: 154 IETEKDRDREREMGETERYRDRERERQKQRETRRDRDRE---RQREKEDRERDR-DRQKE 209
Query: 144 RGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYP 188
R D+ RERE R+RD++R DRE +E+ R++ + P
Sbjct: 210 REKDRY-RERETGRDRDKER-----DRERQREKDRDRQKAIDCVP 248
Score = 43.9 bits (102), Expect = 1e-04
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 98 DAEEKLDRSHDK---SDRGHDK-SDRSHEKLDRGHDKSDRGHD-KSDRDRERGYDK---V 149
D + K DR + DR ++ DR E ++ +R D K ++DRER + +
Sbjct: 89 DRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEERERQRDRKREKDRERQRQREIGI 148
Query: 150 DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
D++RE + E+DRDR +RE G+ R+ RE + K+ +R+D +
Sbjct: 149 DKDREIETEKDRDR-----EREMGETERYRDRER----ERQKQRETRRDRD 190
Score = 42.4 bits (98), Expect = 4e-04
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
++ ++ R + + E+ DR K DR + K +R D+ + +RER
Sbjct: 72 RAKERHREKDREIEKDRDRQR-KRDRERQRWRDRDRKRERWGDRDRETETERQEERER-- 128
Query: 147 DKVDRERERDRERDRDR--GYDKADREEGKERRHHRREEL 184
+ DR+RE+DRER R R G DK DRE E+ R E+
Sbjct: 129 -QRDRKREKDRERQRQREIGIDK-DREIETEKDRDREREM 166
Score = 30.4 bits (67), Expect = 1.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 150 DRERERDRERDRDRGYDK---ADREEGKERRHHRREE 183
+RER+R+RER R R ++ DRE K+R R+ +
Sbjct: 59 ERERQRERERQRKRAKERHREKDREIEKDRDRQRKRD 95
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 53.9 bits (128), Expect = 1e-07
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 75 WLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRG 134
W D +S + RS+N D E + DR + DR ++S + DR
Sbjct: 2135 WDRHRDKDSSRDWDRNRERSANRDREREADRGKE-WDRSRERSRNRERERDR-------- 2185
Query: 135 HDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
+ DRDR R RER+RD+ RDR+RG D+ DR + KE + E
Sbjct: 2186 --RRDRDRSR-----SRERDRDKARDRERGRDRKDRSKSKESARDPKPE 2227
Score = 51.6 bits (122), Expect = 7e-07
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 93 RSSNADAEEKLDRSHDKS-----DRGHDKS---DRSHEKLDRGHDKSDRGHDKSDRDRER 144
R + D + DR DK DR ++S DR E DRG + DR ++S R+RER
Sbjct: 2125 RERDWDRPREWDRHRDKDSSRDWDRNRERSANRDREREA-DRGKEW-DRSRERS-RNRER 2181
Query: 145 GYDKV-DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKA 193
D+ DR+R R RERDRD+ D+ + K+R + P P++ +A
Sbjct: 2182 ERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKESARDPKPEASRA 2231
Score = 38.9 bits (89), Expect = 0.005
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 1/138 (0%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV-DRERERDRE 158
EE + DR ++ + +R D+ D+D R +D+ +R RDRE
Sbjct: 2101 EEPDAQGRASEDRRRERERGRNWSRERDWDRPREWDRHRDKDSSRDWDRNRERSANRDRE 2160
Query: 159 RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWS 218
R+ DRG + E R R+ +S+ +D+ D D + S
Sbjct: 2161 READRGKEWDRSRERSRNRERERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKES 2220
Query: 219 TGLPKRNEAKTGADTTAA 236
PK ++ TA+
Sbjct: 2221 ARDPKPEASRASDAGTAS 2238
>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
isoform 2 [Homo sapiens]
Length = 625
Score = 53.1 bits (126), Expect = 2e-07
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRER-- 144
K +K R + D E+ + ++ G + ++ + D K DRG+ + DRD ER
Sbjct: 189 KEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQK-DRGNRERDRDSERKK 247
Query: 145 -------GYDKVDRERERDRERDRDRGYDKADREEGKERRHH---RREELAPYPKSKKAV 194
G + +R R+RDRERDRD+G D+ DR K H RE+ + K +K
Sbjct: 248 ETERKSEGGKEKERLRDRDRERDRDKGKDR-DRRRVKNGEHSWDLDREKNREHDKPEKKS 306
Query: 195 SRKDEELDPMDPSSYSDAPRGT 216
+ E + ++ D+ T
Sbjct: 307 ASSGEMSKKLSDGTFKDSKAET 328
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 85 VTKSAKKLRSSNADAEEKL--DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDR 142
+T +++L + N EE + D+ D + S ++ + K DR + D+D+
Sbjct: 142 LTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDK 201
Query: 143 ER-----GYDKVDRERER-------DRERDRDRGYDKADREEGKERRHHRREELAPYPKS 190
E+ G + ERER D ER +DRG + DR+ +++ R+ E K
Sbjct: 202 EKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERKSEGG---KE 258
Query: 191 KKAVSRKDEELD 202
K+ + +D E D
Sbjct: 259 KERLRDRDRERD 270
>gi|20070262 TNF receptor-associated factor 3 interacting protein 1
isoform 1 [Homo sapiens]
Length = 691
Score = 53.1 bits (126), Expect = 2e-07
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRER-- 144
K +K R + D E+ + ++ G + ++ + D K DRG+ + DRD ER
Sbjct: 189 KEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQK-DRGNRERDRDSERKK 247
Query: 145 -------GYDKVDRERERDRERDRDRGYDKADREEGKERRHH---RREELAPYPKSKKAV 194
G + +R R+RDRERDRD+G D+ DR K H RE+ + K +K
Sbjct: 248 ETERKSEGGKEKERLRDRDRERDRDKGKDR-DRRRVKNGEHSWDLDREKNREHDKPEKKS 306
Query: 195 SRKDEELDPMDPSSYSDAPRGT 216
+ E + ++ D+ T
Sbjct: 307 ASSGEMSKKLSDGTFKDSKAET 328
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 85 VTKSAKKLRSSNADAEEKL--DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDR 142
+T +++L + N EE + D+ D + S ++ + K DR + D+D+
Sbjct: 142 LTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDK 201
Query: 143 ER-----GYDKVDRERER-------DRERDRDRGYDKADREEGKERRHHRREELAPYPKS 190
E+ G + ERER D ER +DRG + DR+ +++ R+ E K
Sbjct: 202 EKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERKSEGG---KE 258
Query: 191 KKAVSRKDEELD 202
K+ + +D E D
Sbjct: 259 KERLRDRDRERD 270
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 52.8 bits (125), Expect = 3e-07
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 94 SSNADAEEKLDRSHDKSDRG---HDKSDRSHEKLDRG----HDKSDRGHDKSDRDRERGY 146
SS+ D E + ++ + +R +K R +DRG +S H R R+R
Sbjct: 288 SSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKG 347
Query: 147 DKVDRERERDRE----RDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
D+ DR+RER++E R RDR YDK +R +E+ R E + +S+ V K + D
Sbjct: 348 DRRDRDREREKENERGRRRDRDYDK-ERGNEREKERERSRERSKEQRSRGEVEEKKHKED 406
Query: 203 PMD 205
D
Sbjct: 407 KDD 409
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
K ++ RS + E + RS ++ DR ++ DR D+ ++ R R+R Y
Sbjct: 313 KERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDR--DREREKENERGRRRDRDY 370
Query: 147 DKV-DRERERDRERDRDRGYDKADREEGKERRH--------HRREELAPYPKSKKAVSRK 197
DK ERE++RER R+R ++ R E +E++H HR ++ + K + SR
Sbjct: 371 DKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRS 430
Query: 198 DE 199
E
Sbjct: 431 RE 432
Score = 45.4 bits (106), Expect = 5e-05
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 15/143 (10%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGH--DKSDRSHEKL-------DRGHDKSDRGHD 136
++ K + S + EEK + DK DR H DK D EK +R H R +
Sbjct: 385 SRERSKEQRSRGEVEEKKHKE-DKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRN 443
Query: 137 KSDRDRERGYDKVDR----ERERDRERDRDRGYDKADR-EEGKERRHHRREELAPYPKSK 191
R R R +K + +E+ +R R + D E+ K+R H +E +
Sbjct: 444 AGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRS 503
Query: 192 KAVSRKDEELDPMDPSSYSDAPR 214
K S K + D D S D R
Sbjct: 504 KERSHKRDHSDSKDQSDKHDRRR 526
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 32/171 (18%)
Query: 52 WYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEE---KLDRSHD 108
W+ P +P N D + T+ K + AEE ++R
Sbjct: 213 WFSTLFPRIPVPVQKNID------------QQIKTRPRKIKKDGKEGAEEIDRHVERRRS 260
Query: 109 KSDRGHDKSDRSHEKL-DRGHDKSDRGHDKSDRDRERGYDKV-------DRERERDRERD 160
+S R RS + R H + G DR+ ER ++ +RE+ER R R
Sbjct: 261 RSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRS 320
Query: 161 RDRGYDK---------ADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
DRG ++ R ++R+ RR+ K + R+D + D
Sbjct: 321 IDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYD 371
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKS---DRGHDKSDRDRE 143
+S + R D ++ DR +K + + DR ++K +RG+++ +R ++S R
Sbjct: 337 RSRSRSRDRKGDRRDR-DREREKENERGRRRDRDYDK-ERGNEREKERERSRERSKEQRS 394
Query: 144 RGYDKVDRERERDRERDRDRGYDKADREEGK--------ERRHHRREELAPYPK------ 189
RG +V+ ++ ++ + DR DK D ++ K ER+H R K
Sbjct: 395 RG--EVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRS 452
Query: 190 SKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNE 226
+K+ K+E + + S S + T S K+ E
Sbjct: 453 KEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKRE 489
Score = 38.5 bits (88), Expect = 0.006
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHD-KSDRSHEKLDRGHDKSDRGHDKSDRDRER 144
++S K +SS E K ++S+ +S G ++D + R H S K R +ER
Sbjct: 448 SRSRSKEKSSKHKNESK-EKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKER 506
Query: 145 GYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREE 183
+ K D +D+ DR ++ +E +E++H ++E
Sbjct: 507 SH-KRDHSDSKDQSDKHDRRRSQSIEQESQEKQHKNKDE 544
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 52.4 bits (124), Expect = 4e-07
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 25/131 (19%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
R + D E++ +R +K G +++ E+ DR +K + DRDR+R +K +RE
Sbjct: 143 RERDRDREKERERQTEKDRDGQRETETERER-DREREKQKERETERDRDRQRDTEK-ERE 200
Query: 153 RERDRERDRDRGYD---------------------KADREEGKE--RRHHRREELAPYPK 189
R+ DRERDR R + DR+ GKE R R+EE K
Sbjct: 201 RQTDRERDRQRKTQTERQRETDREGERETDRRRERQRDRDRGKERDRERDRKEERKKERK 260
Query: 190 SKKAVSRKDEE 200
++ RK+++
Sbjct: 261 KERKKERKEKK 271
Score = 52.4 bits (124), Expect = 4e-07
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 93 RSSNADAEEKLDRSHDKS-DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRER-GYDKVD 150
R + + E++ +R ++ DR D + DR D+ + + R+ +R G + D
Sbjct: 171 RERDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREGERETD 230
Query: 151 RERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
R RER R+RDR + D+ +R+ +ER+ R++E K KK ++ E+
Sbjct: 231 RRRERQRDRDRGKERDR-ERDRKEERKKERKKERKKERKEKKKEEKRRED 279
Score = 51.2 bits (121), Expect = 9e-07
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ ++ R D E++ +R ++DR D+ ++ + R D+ G ++DR RER
Sbjct: 183 RETERDRDRQRDTEKERER---QTDRERDRQRKTQTERQRETDRE--GERETDRRRERQR 237
Query: 147 DKVDRERERDRERDRDRGYDK-ADREEGKERRHHRREELAPYPKSKK 192
D+ DR +ERDRERDR K +E KER+ ++EE K +K
Sbjct: 238 DR-DRGKERDRERDRKEERKKERKKERKKERKEKKKEEKRREDKKRK 283
Score = 47.8 bits (112), Expect = 1e-05
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKS-------DRGHDKS-DRSHEKLDRGHDKSDR-GHDK 137
K + R E + DR +K DRG ++ DR EK + DR G +
Sbjct: 107 KETNRNRDREKQTEIERDREREKQKGRERERDRGRERERDRDREKERERQTEKDRDGQRE 166
Query: 138 SDRDRERGYDKVDRERERDRERDRDRGYD-------KADREEGKERRHHRREELAPYPKS 190
++ +RER ++ ++++ER+ ERDRDR D + DRE ++R+ + +
Sbjct: 167 TETERERDRER-EKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREG 225
Query: 191 KKAVSRKDEELDPMDPSSYSDAPR 214
++ R+ E D D R
Sbjct: 226 ERETDRRRERQRDRDRGKERDRER 249
Score = 47.4 bits (111), Expect = 1e-05
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ ++ + + E DR D ++DR ++ + + R ++DR+ ER
Sbjct: 173 RDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQR---ETDREGERET 229
Query: 147 DKV-DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK 192
D+ +R+R+RDR ++RDR D+ + E KER+ R++E K +K
Sbjct: 230 DRRRERQRDRDRGKERDRERDRKE-ERKKERKKERKKERKEKKKEEK 275
Score = 45.4 bits (106), Expect = 5e-05
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 22/124 (17%)
Query: 88 SAKKLRSSNADAEEKLDRSHDKSDRGHDKS---DRSHEKLDRGHDKSDRGHDKSDRDRER 144
S +L S + L ++H +D G D+ DR EK ++ D+ DR K DR+R R
Sbjct: 50 SRGRLGSQESPRSWGLGQAHKDAD-GDDRQRERDRVREKTEKERDR-DR---KRDRERRR 104
Query: 145 GYDKVDRER--------ERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSR 196
+ +R R ERDRER++ +G ++ +R+ G+ER R E K ++ +
Sbjct: 105 KEKETNRNRDREKQTEIERDREREKQKGRER-ERDRGRERERDRDRE-----KERERQTE 158
Query: 197 KDEE 200
KD +
Sbjct: 159 KDRD 162
Score = 45.1 bits (105), Expect = 7e-05
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Query: 98 DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKS-----DRDRERGYDKVDRE 152
D + + DR +K+++ D+ + + R +++R D+ +RDRER +++
Sbjct: 76 DRQRERDRVREKTEKERDRDRKRDRERRRKEKETNRNRDREKQTEIERDRER-----EKQ 130
Query: 153 RERDRERDRDRGYDK-ADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSD 211
+ R+RERDR R ++ DRE+ +ER+ + + ++++ R+ E+ + D
Sbjct: 131 KGRERERDRGRERERDRDREKERERQTEKDRDGQRETETERERDREREKQKERETERDRD 190
Query: 212 APRGT 216
R T
Sbjct: 191 RQRDT 195
Score = 42.0 bits (97), Expect = 6e-04
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYD----- 147
R + + E + DR D+ + +++R E G ++DR ++ RDR+RG +
Sbjct: 193 RDTEKERERQTDRERDRQRK--TQTERQRETDREGERETDRRRERQ-RDRDRGKERDRER 249
Query: 148 --KVDRERERDRERDRDRGYDKADREEGKERRHHRREELAP 186
K +R++ER +ER ++R K + + ++++ E ++P
Sbjct: 250 DRKEERKKERKKERKKERKEKKKEEKRREDKKRKWGEGISP 290
>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 52.0 bits (123), Expect = 5e-07
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDK---SDRSHEKLDRGHDKSDRGHDKS-DRDRERGYDK 148
R + + + DR DK DR ++ +DR+ E+ +G + D+ ++ DR+RER +
Sbjct: 82 RQRQRERKRQTDRERDK-DRDRERKRETDRNRERNRKGGRERDKQTERERDRERERQRQR 140
Query: 149 VDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
+RER+R RER R+ ++ E +ER+ R++E K KK ++ E+
Sbjct: 141 -ERERQRQRERKRETDRERQRWAEREERKKERKKERKKERKEKKKEEKRRED 191
Score = 46.2 bits (108), Expect = 3e-05
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDK-----SDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
+ ++ R + + E + +R + +DR DK DR E+ R D++ + K R+
Sbjct: 64 RQRQRERETERETERQRERQRQRERKRQTDRERDK-DRDRER-KRETDRNRERNRKGGRE 121
Query: 142 RERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKK--AVSRKDE 199
R++ + +RER+R+RER R R ++ + E K R+ A + KK RK E
Sbjct: 122 RDK---QTERERDRERERQRQRERERQRQRERKRETDRERQRWAEREERKKERKKERKKE 178
Query: 200 ELDPMDPSSYSDAPRGTWSTGL 221
+ + + W G+
Sbjct: 179 RKEKKKEEKRREDKKRKWGEGI 200
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRS--HEKLDRGHDKSDRGHDKSDRDRERGYDKVD 150
R D ++ +R D+ ++++R H + DR H + DR ++DR++ER +
Sbjct: 7 RKRETDRGKETERERDRQRERENQTERENRHRQRDR-HRERDR---QTDREKER-----E 57
Query: 151 RERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
R++ERDR+R R+R ++ + + +R R+ + K + E D
Sbjct: 58 RQKERDRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRETD 109
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRG-----HDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
+ K+ + E + DR ++ ++ H + DR H + DR D+ + +RD
Sbjct: 5 RERKRETDRGKETERERDRQRERENQTERENRHRQRDR-HRERDRQTDREKERERQKERD 63
Query: 142 RERGYDKV---------DRERERDRERDRDRGYDK-ADREEGKER-RHHRREELAPYPKS 190
R+R ++ +R+R+R+R+R DR DK DRE +E R+ R +
Sbjct: 64 RQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRETDRNRERNRKGGRERD 123
Query: 191 KKAVSRKDEE 200
K+ +D E
Sbjct: 124 KQTERERDRE 133
Score = 43.5 bits (101), Expect = 2e-04
Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE 152
R D E++ +R ++ DR + + + +R ++ + K DRER D++
Sbjct: 46 RDRQTDREKERERQKER-DRQRQRERETERETERQRERQRQRERKRQTDRER-----DKD 99
Query: 153 RERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
R+R+R+R+ DR ++ +R+ G+ER ++ E + ++ R+ E + +D
Sbjct: 100 RDRERKRETDRNRER-NRKGGRER--DKQTERERDRERERQRQRERERQRQRERKRETDR 156
Query: 213 PRGTWSTGLPKRNEAK 228
R W+ ++ E K
Sbjct: 157 ERQRWAEREERKKERK 172
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDK-SDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
+ K+ N + K R DK ++R D+ + +R + ++DR+R+R
Sbjct: 102 RERKRETDRNRERNRKGGRERDKQTERERDRERERQRQRERERQRQRERKRETDRERQRW 161
Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAP 186
++ +R++ER +ER ++R K + + ++++ E ++P
Sbjct: 162 AEREERKKERKKERKKERKEKKKEEKRREDKKRKWGEGISP 202
Score = 29.6 bits (65), Expect = 2.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 152 ERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
ER+R+R+R+ DRG + +RE ++R + E + + +D + D
Sbjct: 2 ERQRERKRETDRG-KETERERDRQRERENQTERENRHRQRDRHRERDRQTD 51
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 51.2 bits (121), Expect = 9e-07
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 16/179 (8%)
Query: 89 AKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDK 148
+K+ R + + + DR DR S K R D+ G R R + ++
Sbjct: 16 SKEERKRSRTPDRERDR-----DRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAER 70
Query: 149 VDRERERDRERDRDRGYDKADREEGKERR--HHRREELAPYPKSKKAVSRKDEELDPMDP 206
R +ER+R+++RDR DR++ RR +R L+P + K SRKD + +
Sbjct: 71 ERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSP-GRGKDFKSRKDRDSKKDEE 129
Query: 207 SSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEASRTKQQD 265
+ D L + K + A P F + AEA + +QQ+
Sbjct: 130 DEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSK--------AEREAEALKRRQQE 180
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 115 DKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKA-----D 169
DK DR +S + DRDR+R ++R+R R RDR RG ++
Sbjct: 7 DKKDRDASPSKEERKRSRTPDRERDRDRDR-KSSPSKDRKRHRSRDRRRGGSRSRSRSRS 65
Query: 170 REEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKT 229
+ +ERRH RE ++ ++KD + D D R + S G K +++
Sbjct: 66 KSAERERRHKERER-----DKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK 120
Query: 230 GADT 233
D+
Sbjct: 121 DRDS 124
Score = 36.2 bits (82), Expect = 0.030
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
++S + RS +A+ E + +R +K DR +K GH + D+ +S RG
Sbjct: 57 SRSRSRSRSKSAERERRHKERERDKERDRNKKDRDRDK--DGH-RRDKDRKRSSLSPGRG 113
Query: 146 YD---KVDRERERDRERDRDRGYDKAD---------REEGKERRHHRREELAPYPKSKKA 193
D + DR+ ++D E + KA +++ +E + + L+ + +A
Sbjct: 114 KDFKSRKDRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEA 173
Query: 194 VSRKDEELD 202
+ R+ +E++
Sbjct: 174 LKRRQQEVE 182
Score = 31.6 bits (70), Expect = 0.75
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 81 PNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDR 140
P S+ AKK A+A+ K K++R + R ++++ + K +
Sbjct: 141 PLSLEELLAKKKAEEEAEAKPKF---LSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 141 DRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
++ G ++ +ER+R R+R + + E +E R REE KSK+ + K+
Sbjct: 198 FQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE---KDKSKELHAIKERY 254
Query: 201 L 201
L
Sbjct: 255 L 255
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+SA + RS + S +S RG D+ RS ++ DR ++S + R R+R
Sbjct: 11 RSASRGRSGSRSRSRS--PSDKRSKRGDDRRSRSRDR-DRRRERSRSRDKRRSRSRDRKR 67
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSR 196
+ R RERDR R+R R + R R R +P KSKK +R
Sbjct: 68 LRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENR 117
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 77 SPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHD 136
SP D S K RS + D + + +RS + R DR + R ++
Sbjct: 26 SPSDKRS---KRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRER------ 76
Query: 137 KSDRDRERGYDKV-DRERERDRERD-RDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
DR RER + DR R R R R R R ++ + E R +E+ SK+
Sbjct: 77 --DRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKK 134
Query: 195 SRKDEELD 202
KD++ D
Sbjct: 135 KDKDDKED 142
Score = 36.2 bits (82), Expect = 0.030
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
++S + R S + + + + R +K+D ++ DK D+ D+ ++D
Sbjct: 93 SRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDK-EDEKEKD-AGN 150
Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMD 205
+D+ E E + ++R + + R++ E ++E+ + KK S +D++ D D
Sbjct: 151 FDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK-WSLEDDDDDEDD 209
Query: 206 PS 207
P+
Sbjct: 210 PA 211
Score = 33.1 bits (74), Expect = 0.26
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 110 SDRGHDKS-DRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKA 168
+ RG S RS D+ +S RG D+ R R DR+R R+R R RD+ ++
Sbjct: 13 ASRGRSGSRSRSRSPSDK---RSKRGDDRRSRSR-------DRDRRRERSRSRDKRRSRS 62
Query: 169 -DREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEA 227
DR+ + R R+ +S+ R+ S S + T R++
Sbjct: 63 RDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKE 122
Query: 228 KT 229
KT
Sbjct: 123 KT 124
Score = 31.6 bits (70), Expect = 0.75
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
++ K+LR S + ++ R +S + RS + R S K +R R
Sbjct: 62 SRDRKRLRRSRSRERDR-SRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRS 120
Query: 146 YDKVDR-ERERDRERDRDRGYDKADREEGKER 176
+K D E +++++D+D D+E+ KE+
Sbjct: 121 KEKTDGGESSKEKKKDKD------DKEDEKEK 146
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 50.1 bits (118), Expect = 2e-06
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 73 VSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSD 132
+ WL P + +V K A+ R+ A EK + ++ ++ + + E+ + +
Sbjct: 1224 IYWL-PLTDSQIVQKEAE--RAERAKEREKRRKEQEEEEQKEREKEAERERNRQLEREKR 1280
Query: 133 RGHDKS-DRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRR 181
R H + DR+RER ++ +R+RDRERDR+RG ++ R+ + R R
Sbjct: 1281 REHSRERDRERERERERDRGDRDRDRERDRERGRERDRRDTKRHSRSRSR 1330
Score = 45.4 bits (106), Expect = 5e-05
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 109 KSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRE---RERDRERDRDRGY 165
+++R +R + ++ ++ +++R+R R ++ R RERDRER+R+R
Sbjct: 1238 EAERAERAKEREKRRKEQEEEEQKEREKEAERERNRQLEREKRREHSRERDRERERERER 1297
Query: 166 DKADREEGKERRHHRREE 183
D+ DR+ +ER R E
Sbjct: 1298 DRGDRDRDRERDRERGRE 1315
Score = 35.0 bits (79), Expect = 0.068
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 114 HDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYD--KADRE 171
H ++++ ++ ++R + R+R R + DR++ R+ R R R D + +R
Sbjct: 1130 HPRAEQREQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERA 1189
Query: 172 EGKERRHHRREELAPYPKSK 191
+ KE++ ++E+ P +K
Sbjct: 1190 KSKEKKSEKKEKAQEEPPAK 1209
Score = 32.3 bits (72), Expect = 0.44
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 140 RDRERGYDKVDRERERDRER-DRDRGYDKADREEGKE-------RRHHRREELAPYPKSK 191
R++ER + ERER+ ER +R R + DR++ +E R RR+E A KSK
Sbjct: 1136 REQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERA---KSK 1192
Query: 192 KAVSRKDEELDPMDPSSYSD 211
+ S K E+ P+ D
Sbjct: 1193 EKKSEKKEKAQEEPPAKLLD 1212
Score = 31.2 bits (69), Expect = 0.98
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHE----KLDRGHDKSDRGHDKSD--------R 140
R S++ +EEK D +K +G +S R + KL G ++ D+
Sbjct: 204 RKSSSISEEKGDSDDEKPRKGERRSSRVRQARAAKLSEGSQPAEEEEDQETPSRNLRVRA 263
Query: 141 DRERGYDKVDRERERDRERDRDRGYD------------KADREEGKERRHHRREELAPYP 188
DR ++ + E E + E D + D K +EEG+E + EE+
Sbjct: 264 DRNLKTEEEEEEEEEEEEDDEEEEGDDEGQKSREAPILKEFKEEGEEIPRVKPEEM--MD 321
Query: 189 KSKKAVSRKDEELD 202
+ K S++ E L+
Sbjct: 322 ERPKTRSQEQEVLE 335
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 114 HDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEG 173
H+ +R E+ + + DR+RER + +RERE +R+++R R ++ +RE
Sbjct: 399 HNYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEEWERERA 458
Query: 174 KERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGAD 232
K R+ K ++ K + P PS ++ P+ +T P+ A D
Sbjct: 459 KRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKD 517
Score = 48.5 bits (114), Expect = 6e-06
Identities = 52/228 (22%), Positives = 82/228 (35%), Gaps = 45/228 (19%)
Query: 22 PEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDP 81
P + + E Y D DYE R W Y N H+
Sbjct: 356 PRDVRDTVLEPYADPYYDYEIERF------WRG--------GQYENFRVQYTETEPYHNY 401
Query: 82 NSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRD 141
+ ++ R + E + DR ++ R ++ +R HE RD
Sbjct: 402 RERERERERENRQRERERERERDRERERRQRERER-EREHE-----------------RD 443
Query: 142 RERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKA-------- 193
+ER K + ERER + ++DR + DRE+ +E+ + + +P P S++A
Sbjct: 444 KERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAA 503
Query: 194 -----VSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAA 236
V R DE DP S G + R KT A + +A
Sbjct: 504 TTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASA 551
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 49.7 bits (117), Expect = 3e-06
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 77 SPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHD 136
S H + ++S ++ R S+ + + RS K R H+ D+S +K + + +D+ H
Sbjct: 36 SKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKK-HKSEEHNDKEHS 94
Query: 137 KSDRDRER---GYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKA 193
SD+ RER + DR + ++R+ R R + R +ERRH R + KK+
Sbjct: 95 -SDKGRERLNSSENGEDRHKRKERKSSRGRSH---SRSRSRERRHRSRSR-----ERKKS 145
Query: 194 VSRKDE 199
SR E
Sbjct: 146 RSRSRE 151
Score = 46.2 bits (108), Expect = 3e-05
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERG 145
++S + R + D K +S + +D+ H SD+ E+L+ + DR H + +R RG
Sbjct: 65 SRSKEGRRHESKDKSSKKHKSEEHNDKEHS-SDKGRERLNSSENGEDR-HKRKERKSSRG 122
Query: 146 YDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDE 199
R R R R+R +R++ + R R++ + + KK+ SR E
Sbjct: 123 -----RSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRE 171
Score = 45.1 bits (105), Expect = 7e-05
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 87 KSAKKLRSS-NADAEEKLDRSHDK---SDRGHDKSDRSHEKLDRGHDKS-----DRGHDK 137
KS+KK +S + D E D+ ++ S+ G D+ R K RG S +R H
Sbjct: 78 KSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRS 137
Query: 138 SDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSR 196
R+R++ + RER++ R R R+R ++ E K R R + + ++ SR
Sbjct: 138 RSRERKKSRSR-SRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSR 195
Score = 33.1 bits (74), Expect = 0.26
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
KS++ S + + E+ RS + +R +S K R + + R+R+R
Sbjct: 118 KSSRGRSHSRSRSRERRHRSRSR-ERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRI 176
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKER 176
R R R R R R R ++ + K+R
Sbjct: 177 RSRSRSRSRHRHRTRSRSRTRSRSRDRKKR 206
Score = 28.9 bits (63), Expect = 4.8
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 5/141 (3%)
Query: 129 DKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHRREELAPYP 188
+K+ DK E + R R R R + EG++ R R +
Sbjct: 14 EKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRH 73
Query: 189 KSKKAVSRKDEELDPMDPSSYSDAPRGTWSTG-----LPKRNEAKTGADTTAAGPLFQQR 243
+SK S+K + + D SD R ++ KR E K+ + + ++R
Sbjct: 74 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 133
Query: 244 PYPSPGAVLRANAEASRTKQQ 264
+ S + + SR +++
Sbjct: 134 RHRSRSRERKKSRSRSRERKK 154
>gi|17999539 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Homo
sapiens]
Length = 1227
Score = 49.3 bits (116), Expect = 3e-06
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 119 RSHEKLDRGHDKSDRGHDKSDRDRERGYDK-VDRERERDRERDRDRGYDKADREEGKERR 177
R E+ R H ++ D +E+ D+ DR+R+RD ERDR R +++R+ G ER
Sbjct: 133 RQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRD-ERDRSRHSSRSERDGGSERS 191
Query: 178 HHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLP---------KRNEAK 228
R E +P + K A + + D S Y + R W + P +
Sbjct: 192 SRRNEPESPRHRPKDAATPSRSTWEEED-SGYGSSRRSQWESPSPTPSYRDSERSHRLST 250
Query: 229 TGADTTAAGPLFQQRPYPSP 248
D + G P P+P
Sbjct: 251 RDRDRSVRGKYSDDTPLPTP 270
Score = 29.3 bits (64), Expect = 3.7
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 20/158 (12%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
K KK +S + D + K DR R +S+R D G ++S R ++ + R R
Sbjct: 152 KDWKKEKSRDRDYDRKRDRDERDRSRHSSRSER-----DGGSERSSR-RNEPESPRHRPK 205
Query: 147 DKVDRERERDRERDRDRGYDKADREEGKE-----RRHHRREELAPYPKSKKAVSRKDEEL 201
D R E D G + + E R R L+ + + + ++
Sbjct: 206 DAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDDT 265
Query: 202 DPMDPS----SYSDAPRGTWST-----GLPKRNEAKTG 230
PS ++D R ST G +R E + G
Sbjct: 266 PLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEGEEG 303
>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
Length = 520
Score = 48.5 bits (114), Expect = 6e-06
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 45 LEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLD 104
L G PSW + D S YY + D D + + + R + E + D
Sbjct: 360 LPGSAPSWPSLVDTSKQWDYYARREKDRDR---ERDRDRERDRDRDRERERTRERERERD 416
Query: 105 RSHDKSDRGHDKSD-RSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
S S D+ R E +RG+++ +K +R RER R RE++ R +
Sbjct: 417 HSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER------RHREKEETRHKSS 470
Query: 164 GYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
+ R E +E HRR + + KSK++ K+ +P ++A
Sbjct: 471 RSNSRRRHESEEGDSHRRHK---HKKSKRSKEGKEAGSEPAPEQESTEA 516
>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
Length = 588
Score = 48.5 bits (114), Expect = 6e-06
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 45 LEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLD 104
L G PSW + D S YY + D D + + + R + E + D
Sbjct: 428 LPGSAPSWPSLVDTSKQWDYYARREKDRDR---ERDRDRERDRDRDRERERTRERERERD 484
Query: 105 RSHDKSDRGHDKSD-RSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
S S D+ R E +RG+++ +K +R RER R RE++ R +
Sbjct: 485 HSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER------RHREKEETRHKSS 538
Query: 164 GYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
+ R E +E HRR + + KSK++ K+ +P ++A
Sbjct: 539 RSNSRRRHESEEGDSHRRHK---HKKSKRSKEGKEAGSEPAPEQESTEA 584
>gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]
Length = 594
Score = 48.5 bits (114), Expect = 6e-06
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 45 LEGLPPSWYKVFDPSCGLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLD 104
L G PSW + D S YY + D D + + + R + E + D
Sbjct: 434 LPGSAPSWPSLVDTSKQWDYYARREKDRDR---ERDRDRERDRDRDRERERTRERERERD 490
Query: 105 RSHDKSDRGHDKSD-RSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
S S D+ R E +RG+++ +K +R RER R RE++ R +
Sbjct: 491 HSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER------RHREKEETRHKSS 544
Query: 164 GYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDA 212
+ R E +E HRR + + KSK++ K+ +P ++A
Sbjct: 545 RSNSRRRHESEEGDSHRRHK---HKKSKRSKEGKEAGSEPAPEQESTEA 590
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 48.5 bits (114), Expect = 6e-06
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 24/162 (14%)
Query: 76 LSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGH 135
+S H P V K LR D+EE+ ++ D SHE+ D ++ ++G
Sbjct: 461 MSHHPPGHTVVKDRSHLRKD--DSEEEKEKEEDPG---------SHEEDDESSEQGEKGT 509
Query: 136 DKSDRDRERGYDKVDRER----ERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSK 191
RD+E D+ D E ++E + + ++ + EE +ERR R E AP
Sbjct: 510 HHGSRDQE---DEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGAPLSPDH 566
Query: 192 KAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADT 233
++EE D PR T R E GA +
Sbjct: 567 SEEEEEEEE------GLEEDEPRFTIIPNPLDRREEAGGASS 602
Score = 38.1 bits (87), Expect = 0.008
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 105 RSHDKSDRGHDK---SDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRE--- 158
RSH D D+ S+ H L GH RGHD D + E ++ + E E E
Sbjct: 156 RSHSHQDEDEDEVVSSEHHHHILRHGH----RGHDGEDDEGEEEEEEEEEEEEASTEYGH 211
Query: 159 -RDRDRGYDKADREEGKERRHH 179
R RG+ + E+ + HH
Sbjct: 212 QAHRHRGHGSEEDEDVSDGHHH 233
Score = 35.4 bits (80), Expect = 0.052
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 109 KSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKA 168
+ RGH D R H S R H D D + + V E R RG+D
Sbjct: 132 RGHRGHGSEDTEDSAEHRHHLPSHRSHSHQDEDED---EVVSSEHHHHILRHGHRGHDGE 188
Query: 169 DREEGKERRHHRREE 183
D +EG+E EE
Sbjct: 189 D-DEGEEEEEEEEEE 202
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 98 DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDR 157
+ EE+ + ++ GH + D SD H R +G+++ D + + D
Sbjct: 195 EEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDD 254
Query: 158 ERDRDRGYDKADREEGKERRHHRREE 183
+ D D R + + H EE
Sbjct: 255 DDDDDDDVSIEYRHQAHRHQGHGIEE 280
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 104 DRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDR 163
+ D SD GH SH +GH++ D D D D D D E + R +
Sbjct: 222 EEDEDVSD-GHHHHGPSHR--HQGHEEDDDDDDDDDDDD----DDDDVSIEYRHQAHRHQ 274
Query: 164 GYDKADREEGKERRHHR 180
G+ + E+ + HHR
Sbjct: 275 GHGIEEDEDVSDGHHHR 291
Score = 29.3 bits (64), Expect = 3.7
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 94 SSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRER 153
S E+ D D D D D S E + H G ++ + + + + R
Sbjct: 237 SHRHQGHEEDDDDDDDDDDDDDDDDVSIEYRHQAHRHQGHGIEEDEDVSDGHHHRDPSHR 296
Query: 154 ERDRERDRDRGYDKADREEGKE-RRH--HRREEL 184
R E D D D E G + RH HR+EE+
Sbjct: 297 HRSHEED-DNDDDDVSTEYGHQAHRHQDHRKEEV 329
Score = 28.9 bits (63), Expect = 4.8
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 98 DAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDR 157
+ EE+ + ++ + + ++H RGH S+ D SD G + E D
Sbjct: 191 EGEEEEEEEEEEEEASTEYGHQAHRH--RGHG-SEEDEDVSDGHHHHGPSHRHQGHEEDD 247
Query: 158 ERDRDRGYDKADREEGKERRH--HRRE 182
+ D D D D + E RH HR +
Sbjct: 248 DDDDDDDDDDDDDDVSIEYRHQAHRHQ 274
>gi|239747174 PREDICTED: hypothetical protein XP_002343931, partial
[Homo sapiens]
Length = 213
Score = 48.1 bits (113), Expect = 8e-06
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSD------- 139
+ ++ + ++ + E + +R D+ + + +R E+ H ++DR K
Sbjct: 60 RDREREKQTDREGERQRERERDRDRQRETERERDKERETDRHTETDRERQKQKEREMERV 119
Query: 140 RDRERGYDK-------VDRERERDRERDRDRGYDKADREEGKER----RHHRREELAPYP 188
RDRER K DRE +R+RER +R +RE G+ER RH RE
Sbjct: 120 RDREREKQKEMGRERQTDRETDRERERQAER-----ERETGRERKTEDRHRERERERKRE 174
Query: 189 KSKKAVSRKDEELDPMDPSSYSDAPR 214
+ +K +++ E M+ + R
Sbjct: 175 RERKRETKERERHTDMERERQRETDR 200
Score = 46.2 bits (108), Expect = 3e-05
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 86 TKSAKKLRSSNADAEEKLDRSHD-KSDRGHDKSDRSHEK-LDRGHDKSDRGHDKSDRD-- 141
T++ + R + + + DR+ + K++ H + DR ++ +R D+ ++DR+
Sbjct: 14 TETMDRQRERRRETDRERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGE 73
Query: 142 --RERGYDKVDRERERDRERDRDRGYDK---ADREEGKERRHHRREELAPYPKSKKAVSR 196
RER D+ DR+RE +RERD++R D+ DRE K++ + +K + R
Sbjct: 74 RQRERERDR-DRQRETERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGR 132
Query: 197 K---DEELD 202
+ D E D
Sbjct: 133 ERQTDRETD 141
Score = 45.8 bits (107), Expect = 4e-05
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Query: 93 RSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKV--- 149
R + E K + H + DR D+ DR +K + R+RER D+
Sbjct: 29 RERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGERQRERERDRDRQRET 88
Query: 150 ----DRERERDRERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEE 200
D+ERE DR + DR K E + R RE+ + ++ D E
Sbjct: 89 ERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGRERQTDRETDRE 143
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
E K + H ++ + DR E+ + DR + DR + + DR+R+R+R R
Sbjct: 2 ESKTEGRHTHTET--ETMDRQRERRRETDRERDRAKESKTEDR---HSERDRQRDRERNR 56
Query: 160 DRDRGYDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELD 202
+RDR ++ + + + R RE + + K+ E D
Sbjct: 57 ERDRDREREKQTDREGERQRERERDRDRQRETERERDKERETD 99
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 100 EEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRER 159
E + DR D+ + +R + + D+ + R+RER + +RER D ER
Sbjct: 133 ERQTDRETDRERERQAERERETGRERKTEDRHRERERERKRERERKRETKERERHTDMER 192
Query: 160 DRDRGYD-KADREEGKER 176
+R R D K DR+ ER
Sbjct: 193 ERQRETDRKRDRQRESER 210
Score = 36.2 bits (82), Expect = 0.030
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 87 KSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGY 146
+ +++R + ++++ R ++DR ++DR E+ ++ R DR RER
Sbjct: 114 REMERVRDREREKQKEMGRER-QTDR---ETDRERERQAERERETGRERKTEDRHRERER 169
Query: 147 D-KVDRERERD-RERDRDRGYDKADREEGKERRHHRRE 182
+ K +RER+R+ +ER+R ++ + E +R +RE
Sbjct: 170 ERKRERERKRETKERERHTDMERERQRETDRKRDRQRE 207
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 47.8 bits (112), Expect = 1e-05
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 105 RSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRG 164
R D+ DR ++ +RS E+ + R D+ R R R ++ R RER +++DRDR
Sbjct: 231 RDRDR-DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRK 289
Query: 165 YDKADREEGKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAP 213
+ E R R+EEL + D +PS DAP
Sbjct: 290 RRSSRSRERARRERERKEEL------------RGGGGDMAEPSEAGDAP 326
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 38/128 (29%)
Query: 90 KKLRSSNADAEEKL---DRSHDKSDRGHDKSDRSHEKLDRGHDKSDR------------- 133
++ RS + D EE+ +RS DK +S RS E+ R ++ +
Sbjct: 262 RRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSE 321
Query: 134 --------------GHDKSDRDRERGYDKVDRER------ERDRERDRDRGYDKADREEG 173
G D D E+G D+ DRER ER+R RDRDR D+ DRE
Sbjct: 322 AGDAPPDDGPPGELGPDGPDGPEEKGRDR-DRERRRSHRSERERRRDRDRDRDR-DREHK 379
Query: 174 KERRHHRR 181
+ R R
Sbjct: 380 RGERGSER 387
Score = 35.8 bits (81), Expect = 0.040
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 78 PHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKSDRGHDK 137
PH + ++ RS D E + RS + R + RS +K +R + +R DK
Sbjct: 229 PHRDRDRDRERERRERSRERDKERERRRSRSRDRR---RRSRSRDKEERRRSR-ERSKDK 284
Query: 138 SDRDRE----RGYDKVDRERERDRERDRDRGYDKADREE 172
DRDR+ R ++ RERER +E R G D A+ E
Sbjct: 285 -DRDRKRRSSRSRERARRERER-KEELRGGGGDMAEPSE 321
Score = 33.1 bits (74), Expect = 0.26
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 91 KLRSSNADAEEKLDRSHDKSDRGHDKSDRSHEKLDRGHDKS-DRGHDKSDRDRERGYDK 148
+L D E+ R D+ R +S+R + DR D+ DR H + +R ERG D+
Sbjct: 334 ELGPDGPDGPEEKGRDRDRERRRSHRSERERRR-DRDRDRDRDREHKRGERGSERGRDE 391
Score = 32.3 bits (72), Expect = 0.44
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 111 DRGHDKSDRSHEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADR 170
++G D+ DR + R + R D+ DRDR+R + + +R ER R+ R G + +
Sbjct: 345 EKGRDR-DRERRRSHRSERERRRDRDR-DRDRDREHKRGERGSERGRDEARGGGGGQDNG 402
Query: 171 EEG 173
EG
Sbjct: 403 LEG 405
Score = 29.3 bits (64), Expect = 3.7
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 142 RERGYDKVDRERERD-------RERDRDRGYDKADREEGKERRHHRREELAPYPKSKKAV 194
R G D R ER R+RDRDR ++ +R +++ RR + + +
Sbjct: 209 RHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRS 268
Query: 195 SRKDEELDPMDPSSYSDAPR 214
K+E + S D R
Sbjct: 269 RDKEERRRSRERSKDKDRDR 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,140,899
Number of Sequences: 37866
Number of extensions: 649703
Number of successful extensions: 8519
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 3049
Number of HSP's gapped (non-prelim): 2528
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.