Search of human proteins with 72534722

Search of human proteins with 72534722

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|72534722 oligonucleotide/oligosaccharide-binding fold
containing 2A [Homo sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|72534722 oligonucleotide/oligosaccharide-binding fold contain...   421   e-118
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain...   223   7e-59
gi|23308501 hypothetical protein LOC124045 [Homo sapiens]              31   0.64 
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    30   1.1  
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    30   1.1  
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    30   1.1  
gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo s...    30   1.9  
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom...    30   1.9  
gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]     30   1.9  
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    30   1.9  
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    30   1.9  
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom...    30   1.9  
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo...    30   1.9  
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho...    30   1.9  
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho...    30   1.9  
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom...    30   1.9  
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    29   2.4  
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    29   2.4  
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    29   2.4  
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    29   2.4  
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ...    28   4.1  
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ...    28   4.1  
gi|7657307 LIM domains containing 1 [Homo sapiens]                     28   4.1  
gi|191252782 p21-activated kinase 6 [Homo sapiens]                     28   5.4  
gi|191252780 p21-activated kinase 6 [Homo sapiens]                     28   5.4  
gi|9910476 p21-activated kinase 6 [Homo sapiens]                       28   5.4  
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               28   5.4  
gi|62988359 DDB1 and CUL4 associated factor 8-like 1 [Homo sapiens]    28   7.1  
gi|60097902 filaggrin [Homo sapiens]                                   27   9.2  
gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]                     27   9.2  

>gi|72534722 oligonucleotide/oligosaccharide-binding fold containing
           2A [Homo sapiens]
          Length = 204

 Score =  421 bits (1083), Expect = e-118
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD 60
           MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
Sbjct: 1   MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD 60

Query: 61  EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR 120
           EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
Sbjct: 61  EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR 120

Query: 121 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ 180
           GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ
Sbjct: 121 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ 180

Query: 181 GTASNQTVMTTISNGRDPRRAFKR 204
           GTASNQTVMTTISNGRDPRRAFKR
Sbjct: 181 GTASNQTVMTTISNGRDPRRAFKR 204


>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
           2B [Homo sapiens]
          Length = 211

 Score =  223 bits (569), Expect = 7e-59
 Identities = 117/206 (56%), Positives = 142/206 (68%), Gaps = 11/206 (5%)

Query: 10  FIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 69
           F++DIKPGLKNLN++FIVLE GRVTKTKDGHEVR+CKVADKTGSI ISVWD++G LIQPG
Sbjct: 6   FVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 65

Query: 70  DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYRGQQ--NKGA 127
           DIIRLT+GYAS++KGCLTLYTGRGG+LQKIGEFCMVYSEVPNFSEPNP+Y  QQ  NK  
Sbjct: 66  DIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAV 125

Query: 128 QSEQKNNSMNSNMGTGTFGPV-----GNGVHT--GPESREHQFSHAGRSNGRGLINPQLQ 180
           Q++   ++     G     P      GNG+    GP    H            +   Q  
Sbjct: 126 QNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPN 185

Query: 181 GTASNQTVMTT--ISNGRDPRRAFKR 204
            T +     ++  +SNG++ RR+ KR
Sbjct: 186 HTPAGPPGPSSNPVSNGKETRRSSKR 211


>gi|23308501 hypothetical protein LOC124045 [Homo sapiens]
          Length = 139

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 109 VPNFSEPNPDYRGQQNKGA--QSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHA 166
           VP   E   +   Q+ + A  +SE+  +S++   GT    P    +   P+ ++      
Sbjct: 23  VPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEEKPDVKQ------ 76

Query: 167 GRSNGRGLINPQLQGT-ASNQTVMTTISNGRDPRRAFK 203
            +S+ + ++ PQ+  T ASN+T+++  S+G D +R  +
Sbjct: 77  -KSSRKKVVVPQIIITRASNETLVSCSSSGSDQQRTIR 113


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 115 PNPDYRGQQNKGAQSEQKNNSMNS-NMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRG 173
           P+P   GQ + G  S Q++NS  +       +GP GN       S     S++G   G G
Sbjct: 758 PHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMG 817

Query: 174 L-INPQLQGTASNQ 186
           +  N Q+ G   +Q
Sbjct: 818 ISANNQMHGQGPSQ 831


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 115 PNPDYRGQQNKGAQSEQKNNSMNS-NMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRG 173
           P+P   GQ + G  S Q++NS  +       +GP GN       S     S++G   G G
Sbjct: 745 PHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMG 804

Query: 174 L-INPQLQGTASNQ 186
           +  N Q+ G   +Q
Sbjct: 805 ISANNQMHGQGPSQ 818


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 115 PNPDYRGQQNKGAQSEQKNNSMNS-NMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRG 173
           P+P   GQ + G  S Q++NS  +       +GP GN       S     S++G   G G
Sbjct: 745 PHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMG 804

Query: 174 L-INPQLQGTASNQ 186
           +  N Q+ G   +Q
Sbjct: 805 ISANNQMHGQGPSQ 818


>gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo
           sapiens]
          Length = 354

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 106 YSEVPN-FSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESR----- 159
           YS+ P+ +S+ +  Y GQQ+   Q    +  +      G  GP  N   +GP++R     
Sbjct: 247 YSQAPSQYSQQSSSY-GQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG 305

Query: 160 ---EHQFSHAGRSNGRGLINPQLQGTASNQTVMTTI 192
                  S  GR  GRG +     G  S   V T+I
Sbjct: 306 GFDRGGMSRGGRGGGRGGM-----GLQSESLVYTSI 336


>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
           containing 2 [Homo sapiens]
          Length = 1455

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 127 AQSEQKNNSMNSNMGTGTFGPV-----------GNGVHTGPESREHQFSHAGRS 169
           A+ ++K N   SNM   +  P            GNGV   PES EH+   AG S
Sbjct: 211 AEGKRKRNKSVSNMEKASIEPPEEEEEERPVVNGNGVVVTPESSEHEDKSAGAS 264


>gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]
          Length = 2555

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 130  EQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGR 172
            EQK  S N   G   +  VG  VH+G  S  H +S+  + NG+
Sbjct: 1850 EQKEQSDNETAGGTKYRLVGVLVHSGQASGGHYYSYIIQRNGK 1892


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 105 VYSEVPNFSEPNPDYRGQ----------QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHT 154
           +++EVP    P P+ RG+          + +G         MN+  G G++G  GN    
Sbjct: 633 MHNEVP----PPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGYGGNSATA 688

Query: 155 GPESREHQFSHAGRSNGRG 173
           G         H+G ++G G
Sbjct: 689 GYSQFYSNGGHSGNASGGG 707


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 105 VYSEVPNFSEPNPDYRGQ----------QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHT 154
           +++EVP    P P+ RG+          + +G         MN+  G G++G  GN    
Sbjct: 629 MHNEVP----PPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGYGGNSATA 684

Query: 155 GPESREHQFSHAGRSNGRG 173
           G         H+G ++G G
Sbjct: 685 GYSQFYSNGGHSGNASGGG 703


>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
           sapiens]
          Length = 1455

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 68  PGDIIRLTRGYASMWKGCLTLYTGRGGE-----LQKIGEFCMVYSEVPNFSEPNPDYRGQ 122
           P  + +L      +  G  T  T  G       +Q++ E     S V  FS P+ +   Q
Sbjct: 689 PNSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVL-FSAPDGNENVQ 747

Query: 123 QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQGT 182
           +   A   Q+ + + S +  G F      VHT P++        GR+     ++PQ + T
Sbjct: 748 EQLSADIFQQVSQIQSGVSPGMFSSTEPTVHTRPDN-----LLPGRAES---VHPQSENT 799

Query: 183 ASNQ 186
            SNQ
Sbjct: 800 LSNQ 803


>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
           sapiens]
          Length = 1531

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 68  PGDIIRLTRGYASMWKGCLTLYTGRGGE-----LQKIGEFCMVYSEVPNFSEPNPDYRGQ 122
           P  + +L      +  G  T  T  G       +Q++ E     S V  FS P+ +   Q
Sbjct: 765 PNSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVL-FSAPDGNENVQ 823

Query: 123 QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQGT 182
           +   A   Q+ + + S +  G F      VHT P++        GR+     ++PQ + T
Sbjct: 824 EQLSADIFQQVSQIQSGVSPGMFSSTEPTVHTRPDN-----LLPGRAES---VHPQSENT 875

Query: 183 ASNQ 186
            SNQ
Sbjct: 876 LSNQ 879


>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
           sapiens]
          Length = 1548

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 68  PGDIIRLTRGYASMWKGCLTLYTGRGGE-----LQKIGEFCMVYSEVPNFSEPNPDYRGQ 122
           P  + +L      +  G  T  T  G       +Q++ E     S V  FS P+ +   Q
Sbjct: 782 PNSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVL-FSAPDGNENVQ 840

Query: 123 QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQGT 182
           +   A   Q+ + + S +  G F      VHT P++        GR+     ++PQ + T
Sbjct: 841 EQLSADIFQQVSQIQSGVSPGMFSSTEPTVHTRPDN-----LLPGRAES---VHPQSENT 892

Query: 183 ASNQ 186
            SNQ
Sbjct: 893 LSNQ 896


>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
           sapiens]
          Length = 1549

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 68  PGDIIRLTRGYASMWKGCLTLYTGRGGE-----LQKIGEFCMVYSEVPNFSEPNPDYRGQ 122
           P  + +L      +  G  T  T  G       +Q++ E     S V  FS P+ +   Q
Sbjct: 783 PNSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVL-FSAPDGNENVQ 841

Query: 123 QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQGT 182
           +   A   Q+ + + S +  G F      VHT P++        GR+     ++PQ + T
Sbjct: 842 EQLSADIFQQVSQIQSGVSPGMFSSTEPTVHTRPDN-----LLPGRAES---VHPQSENT 893

Query: 183 ASNQ 186
            SNQ
Sbjct: 894 LSNQ 897


>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
           sapiens]
          Length = 1455

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 68  PGDIIRLTRGYASMWKGCLTLYTGRGGE-----LQKIGEFCMVYSEVPNFSEPNPDYRGQ 122
           P  + +L      +  G  T  T  G       +Q++ E     S V  FS P+ +   Q
Sbjct: 689 PNSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVL-FSAPDGNENVQ 747

Query: 123 QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQGT 182
           +   A   Q+ + + S +  G F      VHT P++        GR+     ++PQ + T
Sbjct: 748 EQLSADIFQQVSQIQSGVSPGMFSSTEPTVHTRPDN-----LLPGRAES---VHPQSENT 799

Query: 183 ASNQ 186
            SNQ
Sbjct: 800 LSNQ 803


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 106 YSEVPN-FSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESR----- 159
           YS+ P+ +S+ +  Y GQQ+   Q    +  +      G  GP  N   +GP++R     
Sbjct: 191 YSQAPSQYSQQSSSY-GQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG 249

Query: 160 ---EHQFSHAGRSNGRG 173
                  S  GR  GRG
Sbjct: 250 GFDRGGMSRGGRGGGRG 266


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 106 YSEVPN-FSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESR----- 159
           YS+ P+ +S+ +  Y GQQ+   Q    +  +      G  GP  N   +GP++R     
Sbjct: 247 YSQAPSQYSQQSSSY-GQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG 305

Query: 160 ---EHQFSHAGRSNGRG 173
                  S  GR  GRG
Sbjct: 306 GFDRGGMSRGGRGGGRG 322


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 106 YSEVPN-FSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESR----- 159
           YS+ P+ +S+ +  Y GQQ+   Q    +  +      G  GP  N   +GP++R     
Sbjct: 253 YSQAPSQYSQQSSSY-GQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG 311

Query: 160 ---EHQFSHAGRSNGRG 173
                  S  GR  GRG
Sbjct: 312 GFDRGGMSRGGRGGGRG 328


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 106 YSEVPN-FSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESR----- 159
           YS+ P+ +S+ +  Y GQQ+   Q    +  +      G  GP  N   +GP++R     
Sbjct: 247 YSQAPSQYSQQSSSY-GQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG 305

Query: 160 ---EHQFSHAGRSNGRG 173
                  S  GR  GRG
Sbjct: 306 GFDRGGMSRGGRGGGRG 322


>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
           sapiens]
          Length = 1723

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 103 CMVYSEVPNFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGT---FGPVGNGVHTG---- 155
           C+   +  + SE   D     N G++      S  SN G G+       GN  + G    
Sbjct: 202 CIASKDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNECNLGVWKS 261

Query: 156 -PESREHQFSHAGRSNGRGLIN 176
            P+++  Q S++   N  GL N
Sbjct: 262 DPKAKSVQSSNSTTENNNGLGN 283


>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
           sapiens]
          Length = 1833

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 103 CMVYSEVPNFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGT---FGPVGNGVHTG---- 155
           C+   +  + SE   D     N G++      S  SN G G+       GN  + G    
Sbjct: 202 CIASKDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNECNLGVWKS 261

Query: 156 -PESREHQFSHAGRSNGRGLIN 176
            P+++  Q S++   N  GL N
Sbjct: 262 DPKAKSVQSSNSTTENNNGLGN 283


>gi|7657307 LIM domains containing 1 [Homo sapiens]
          Length = 676

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 110 PNFSEPNPDYRGQQNK-GAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGR 168
           P F E    +  +  K   Q +Q+       +  G+ GPV  G   GP++R        +
Sbjct: 39  PEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARWEVV--GSK 96

Query: 169 SNGRGLINPQLQGTASNQTVMTTISNGRDP 198
               G   P L  +      +TT++ G+ P
Sbjct: 97  LTVDGAAKPPLAASTGAPGAVTTLAAGQPP 126


>gi|191252782 p21-activated kinase 6 [Homo sapiens]
          Length = 681

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 110 PNFSEPNPDYRGQQNKGAQSEQKNN---------SMNSNMGTGTFGPVGNGVHTGPESRE 160
           P+ S+P P  + + N   +  QK+N         S+ S+   GTF P+     + P+   
Sbjct: 274 PSSSKPGPPPQSKPNSSFRPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSSPQKSL 333

Query: 161 HQFSHAGRSNGR 172
                 G+  GR
Sbjct: 334 RTAPATGQLPGR 345


>gi|191252780 p21-activated kinase 6 [Homo sapiens]
          Length = 681

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 110 PNFSEPNPDYRGQQNKGAQSEQKNN---------SMNSNMGTGTFGPVGNGVHTGPESRE 160
           P+ S+P P  + + N   +  QK+N         S+ S+   GTF P+     + P+   
Sbjct: 274 PSSSKPGPPPQSKPNSSFRPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSSPQKSL 333

Query: 161 HQFSHAGRSNGR 172
                 G+  GR
Sbjct: 334 RTAPATGQLPGR 345


>gi|9910476 p21-activated kinase 6 [Homo sapiens]
          Length = 681

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 110 PNFSEPNPDYRGQQNKGAQSEQKNN---------SMNSNMGTGTFGPVGNGVHTGPESRE 160
           P+ S+P P  + + N   +  QK+N         S+ S+   GTF P+     + P+   
Sbjct: 274 PSSSKPGPPPQSKPNSSFRPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSSPQKSL 333

Query: 161 HQFSHAGRSNGR 172
                 G+  GR
Sbjct: 334 RTAPATGQLPGR 345


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 142  TGTFGPVGNGVHTGPESREHQFSHAGRSNGRG 173
            +G  GP+G+  +TGP  RE      GR+  RG
Sbjct: 1419 SGPKGPIGHRGNTGPLGREGIIGPTGRTGPRG 1450


>gi|62988359 DDB1 and CUL4 associated factor 8-like 1 [Homo sapiens]
          Length = 600

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 123 QNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQGT 182
           QN  ++S  ++  + S MG G FG    G  T  E  E +    G    +  + P+  GT
Sbjct: 68  QNTDSESSSEDVELES-MGEGLFGYPLVGEETEREEEEEEMEEEGEEEEQPRMCPRCGGT 126

Query: 183 ASNQTVM 189
             +Q ++
Sbjct: 127 NHDQCLL 133


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 120  RGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGR 172
            R   ++G+   Q ++S   +  + T     +G   GP  + HQ S  GRS GR
Sbjct: 2356 RDSGHRGSSGSQASDSEGHSEDSDTQSVSAHG-QAGPHQQSHQESTRGRSAGR 2407



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 120  RGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGR 172
            R   ++G+   Q ++S   +  + T     +G   GP  + HQ S  GRS GR
Sbjct: 3652 RDSGHRGSSGSQASDSEGHSEDSDTQSVSAHG-QAGPHQQSHQESTRGRSAGR 3703


>gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]
          Length = 1503

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 109 VPNFSEPNPDYRGQQNKGAQSEQKNNSMN--SNMGTGTFGPVGNG-VHTG 155
           VPN S P P       +G +S+   +S+N    +G G FG V  G ++TG
Sbjct: 110 VPNISLPAPSQFQPSVEGLKSQVARHSLNYIQEIGNGWFGKVLLGEIYTG 159


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,425,758
Number of Sequences: 37866
Number of extensions: 396270
Number of successful extensions: 1007
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 46
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.