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Search of human proteins with 71772838
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71772838 sorting nexin 22 [Homo sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71772838 sorting nexin 22 [Homo sapiens] 405 e-113
gi|7662655 SBBI31 protein [Homo sapiens] 159 1e-39
gi|66472382 nischarin [Homo sapiens] 43 2e-04
gi|222537716 sorting nexin 31 [Homo sapiens] 40 0.001
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 40 0.001
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 40 0.002
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 40 0.002
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 40 0.002
gi|7661890 sorting nexin 17 [Homo sapiens] 39 0.002
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide... 39 0.003
gi|154091028 sorting nexin 29 [Homo sapiens] 38 0.005
gi|47519798 neutrophil cytosolic factor 4 isoform 1 [Homo sapiens] 38 0.006
gi|163644267 neutrophil cytosolic factor 4 isoform 2 [Homo sapiens] 38 0.006
gi|23111023 sorting nexin 10 [Homo sapiens] 37 0.010
gi|23510413 sorting nexin 26 [Homo sapiens] 36 0.023
gi|17864088 sorting nexin 13 [Homo sapiens] 35 0.030
gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens] 35 0.040
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 35 0.040
gi|31742501 sorting nexin family member 27 [Homo sapiens] 34 0.068
gi|23111026 sorting nexin 11 [Homo sapiens] 32 0.26
gi|23111028 sorting nexin 11 [Homo sapiens] 32 0.26
gi|157502225 Janus kinase and microtubule interacting protein 3 ... 32 0.34
gi|4507143 sorting nexin 3 isoform a [Homo sapiens] 32 0.44
gi|23111030 sorting nexin 12 [Homo sapiens] 31 0.57
gi|23111038 sorting nexin 2 [Homo sapiens] 31 0.75
gi|38708169 sorting nexin 25 [Homo sapiens] 31 0.75
gi|115298672 neutrophil cytosolic factor 1 [Homo sapiens] 30 0.98
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 30 1.7
gi|60460889 Myb protein P42POP [Homo sapiens] 30 1.7
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens] 30 1.7
>gi|71772838 sorting nexin 22 [Homo sapiens]
Length = 193
Score = 405 bits (1041), Expect = e-113
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKV 60
MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKV
Sbjct: 1 MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKV 60
Query: 61 PDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWG 120
PDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWG
Sbjct: 61 PDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWG 120
Query: 121 TLREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISPDKAQP 180
TLREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISPDKAQP
Sbjct: 121 TLREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISPDKAQP 180
Query: 181 KAACHPAPLPPMP 193
KAACHPAPLPPMP
Sbjct: 181 KAACHPAPLPPMP 193
>gi|7662655 SBBI31 protein [Homo sapiens]
Length = 169
Score = 159 bits (402), Expect = 1e-39
Identities = 83/174 (47%), Positives = 113/174 (64%), Gaps = 6/174 (3%)
Query: 2 LEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVP 61
+EV+IPS E E+ + VF++EVL +GR+H V +RYSEFHALHK++KK K P
Sbjct: 1 MEVYIPSFRYE----ESDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTP 56
Query: 62 DFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWGT 121
+ PSK + NW + LEQRRQGLE Y+Q ++ N+E+PK L+FL +RH P+ PKA + G+
Sbjct: 57 EIPSKHVRNWVPKVLEQRRQGLETYLQAVILENEELPKLFLDFLNVRHLPSLPKAESCGS 116
Query: 122 LREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISP 175
E +SS HQ PVL F DPYV P+ PNVV+ GVL G++ + P
Sbjct: 117 FDETESEESSKLSHQ-PVLLFLRDPYVL-PAASDFPNVVIEGVLHGIFYPHLQP 168
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 23 SHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVPD--FPSKRLPNWRTRGL-EQR 79
++ V+ ++V TV RYS+FH LH+++ K+ P K++ +R L E+R
Sbjct: 29 TYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKR 88
Query: 80 RQGLEAYIQGILYLNQEV-PKELLEFLRLRHF 110
+ LE Y+Q +L V P+ L FL HF
Sbjct: 89 EKDLEVYLQKLLAAFPGVTPRVLAHFLHF-HF 119
>gi|222537716 sorting nexin 31 [Homo sapiens]
Length = 440
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 43 RYSEFHALHKRIKKLYK--VPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKE 100
RYS+ H ++++++++ +P FP K T ++RR LE Y+Q + + +
Sbjct: 37 RYSQLHGWNEQLRRVFGNCLPPFPPKYYLAMTTAMADERRDQLEQYLQNVTMDPNVLRSD 96
Query: 101 L-LEFLRLRHFPTDPKASNWGTLREFLPGDSS 131
+ +EFL+L T A+ L FLP + S
Sbjct: 97 VFVEFLKLAQLNTFDIATKKAYLDIFLPNEQS 128
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 40.0 bits (92), Expect = 0.001
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 23 SHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLY---KVPDFPSKRL-PNWRTRGLEQ 78
+H F V++ TV RRYS F +HK +K Y +FP K+L N R + +
Sbjct: 1200 AHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAE 1259
Query: 79 RRQGLEAYIQ 88
RR LE Y++
Sbjct: 1260 RRSHLEKYLR 1269
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 7 PSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVP--DFP 64
PSV + + +K V++V V V RRY+EF L+ +KK + P
Sbjct: 14 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIP 73
Query: 65 SKRL--PNWRTRGLEQRRQGLEAYIQGIL 91
+KR+ N+ ++QRR GL +IQ ++
Sbjct: 74 AKRIFGDNFDPDFIKQRRAGLNEFIQNLV 102
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 7 PSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVP--DFP 64
PSV + + +K V++V V V RRY+EF L+ +KK + P
Sbjct: 14 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIP 73
Query: 65 SKRL--PNWRTRGLEQRRQGLEAYIQGIL 91
+KR+ N+ ++QRR GL +IQ ++
Sbjct: 74 AKRIFGDNFDPDFIKQRRAGLNEFIQNLV 102
>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 7 PSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVP--DFP 64
PSV + + +K V++V V V RRY+EF L+ +KK + P
Sbjct: 14 PSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIP 73
Query: 65 SKRL--PNWRTRGLEQRRQGLEAYIQGIL 91
+KR+ N+ ++QRR GL +IQ ++
Sbjct: 74 AKRIFGDNFDPDFIKQRRAGLNEFIQNLV 102
>gi|7661890 sorting nexin 17 [Homo sapiens]
Length = 470
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 43 RYSEFHALHKRIKKLYK---VPDFPSKRLPNWRTRGLEQRRQGLEAYIQGI 90
RYS+ LH++++K Y +P FP K+L + +EQRR+ LE Y+Q +
Sbjct: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAV 86
>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
[Homo sapiens]
Length = 1634
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 40 VPRRYSEFHALHKRIKKLYK---VPDFPSKRLPNWRTRG---LEQRRQGLEAYIQGILYL 93
+ R + EF LH +++ L+ +P FPS R R+RG E+RR+ L YI +++
Sbjct: 1402 IQRTFEEFQELHNKLRLLFPSSHLPSFPS-RFVIGRSRGEAVAERRREELNGYIWHLIHA 1460
Query: 94 NQEVPKELLEFLRLRHFPTDPKA 116
EV + L + P D KA
Sbjct: 1461 PPEVAECDLVYTFFHPLPRDEKA 1483
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 1 MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLY-- 58
++ V IPSV R + V++V + + RRY+EF +LH +++ Y
Sbjct: 272 LINVWIPSVFL-----RGKAANAFHVYQVYIRIKDDEWNIYRRYTEFRSLHHKLQNKYPQ 326
Query: 59 -KVPDFPSKR-LPNWRTRGLEQRRQGLEAYIQGIL 91
+ +FP K+ + N + +E+RR+ L+ Y++ ++
Sbjct: 327 VRAYNFPPKKAIGNKDAKFVEERRKQLQNYLRSVM 361
>gi|47519798 neutrophil cytosolic factor 4 isoform 1 [Homo sapiens]
Length = 339
Score = 37.7 bits (86), Expect = 0.006
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 23 SHMVFRVEVLCSG-RRHTVPRRYSEFHALHKRIKKLY-----------KVPDFPSKRLPN 70
SH VF +EV G ++ + RRY +FHAL ++++ + +P P+K
Sbjct: 37 SHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVG 96
Query: 71 WRTRGLEQRRQGLEAYIQGILYL 93
+ E R L AY++ +L L
Sbjct: 97 VKQEIAEMRIPALNAYMKSLLSL 119
>gi|163644267 neutrophil cytosolic factor 4 isoform 2 [Homo sapiens]
Length = 348
Score = 37.7 bits (86), Expect = 0.006
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 23 SHMVFRVEVLCSG-RRHTVPRRYSEFHALHKRIKKLY-----------KVPDFPSKRLPN 70
SH VF +EV G ++ + RRY +FHAL ++++ + +P P+K
Sbjct: 37 SHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVG 96
Query: 71 WRTRGLEQRRQGLEAYIQGILYL 93
+ E R L AY++ +L L
Sbjct: 97 VKQEIAEMRIPALNAYMKSLLSL 119
>gi|23111023 sorting nexin 10 [Homo sapiens]
Length = 201
Score = 37.0 bits (84), Expect = 0.010
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 25 MVFRVEVLCSGRRHTVPRRYSEFHALHKRIKK---LYKVPDFPSKRLP-NWRTRG-LEQR 79
M F ++ C V RRY EF L +R++ L ++P+ PSK L N R ++QR
Sbjct: 41 MCFTMKTSC------VRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQR 94
Query: 80 RQGLEAYIQGIL 91
RQGLE +++ +L
Sbjct: 95 RQGLEDFLRKVL 106
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 35.8 bits (81), Expect = 0.023
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 VGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKK 56
+ P+ EGP S E + +VF V+V C GR V R Y +F +L + +
Sbjct: 66 LSPDREGPSLSGE-NELVFGVQVTCQGRSWPVLRSYDDFRSLDAHLHR 112
>gi|17864088 sorting nexin 13 [Homo sapiens]
Length = 957
Score = 35.4 bits (80), Expect = 0.030
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 42 RRYSEFHALHKRI----KKLYKVPDFPSKRLPNWRTRG-LEQRRQGLEAYIQGIL 91
RRYS+FH H RI + L + P K+ N R LE+R++ L AY+Q +L
Sbjct: 600 RRYSDFHDFHMRITEQFESLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYLQLLL 654
>gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens]
Length = 316
Score = 35.0 bits (79), Expect = 0.040
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 25 MVFRVEVLCSG----RRHTVPRRYSEFHALHKRIKKLYKVP----DFPSKRLP-NWRTRG 75
+V+++ V+ +G + + RRYS+F L K + K ++ +FP K L N+
Sbjct: 94 VVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEM 153
Query: 76 LEQRRQGLEAYIQGILYLNQEV--PKELLEFL 105
+ +RR+ L+ Y+ G+LY + V +E L+FL
Sbjct: 154 ICERRRALQEYL-GLLYAIRCVRRSREFLDFL 184
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 35.0 bits (79), Expect = 0.040
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 18 QSPEKSHMVFRVEVLCSGRRHTVP----RRYSEFHALHKRIKKLYKVP----DFPSKRL- 68
+ P ++++ + V+ G P RRYS+F LH+ +++ ++ P FP KRL
Sbjct: 142 KDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLR 201
Query: 69 PNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFP 111
N+ + +R + E ++ + Q VP+ LRH P
Sbjct: 202 RNFTAETIARRSRAFEQFLGHL----QAVPE-------LRHAP 233
>gi|31742501 sorting nexin family member 27 [Homo sapiens]
Length = 528
Score = 34.3 bits (77), Expect = 0.068
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 6 IPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVPDFPS 65
+P P + Q+ EK F V + R +RY EF LH+ +K+ + FP
Sbjct: 163 VPISVPRYKHVEQNGEK----FVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFP- 217
Query: 66 KRLPN-W----RTRGLEQRRQGLEAYIQGI 90
RLP W + L+ RR+GLE Y++ +
Sbjct: 218 -RLPGKWPFSLSEQQLDARRRGLEEYLEKV 246
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 32.3 bits (72), Expect = 0.26
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 40 VPRRYSEFHALHKRIKK---LYKVPDFPSKR-LPNWRTRGLEQRRQGLEAYIQGIL 91
V RRY EF L K++++ L VP+ P K +E+RRQGL+ +++ +L
Sbjct: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVL 111
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 32.3 bits (72), Expect = 0.26
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 40 VPRRYSEFHALHKRIKK---LYKVPDFPSKR-LPNWRTRGLEQRRQGLEAYIQGIL 91
V RRY EF L K++++ L VP+ P K +E+RRQGL+ +++ +L
Sbjct: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVL 111
>gi|157502225 Janus kinase and microtubule interacting protein 3
[Homo sapiens]
Length = 844
Score = 32.0 bits (71), Expect = 0.34
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 88 QGILYLNQEVPKEL----LEFLRLRHFPTDPKASNWGTLREFLPGDSSSQQHQRPVLSFH 143
Q + NQE+ +++ E RLRH D + N L EF + ++ + P +SFH
Sbjct: 571 QALYRRNQELVEKIKQMETEEARLRHEVQDARDQN--ELLEFRILELEERERKSPAISFH 628
Query: 144 VDPYVCNPSP-------ESLPNVVVNGVLQGL 168
P+V SP E + ++VV +++ L
Sbjct: 629 HTPFVDGKSPLQVYCEAEGVTDIVVAELMKKL 660
>gi|4507143 sorting nexin 3 isoform a [Homo sapiens]
Length = 162
Score = 31.6 bits (70), Expect = 0.44
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 36 RRHTVPRRYSEFHALHKRIKKLYK--VPDFPSK----RLPNWRTRG------LEQRRQGL 83
+ TV RRYS+F L +++ K VP P K +LP G +E+R+QGL
Sbjct: 63 KESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGL 122
Query: 84 EAYIQGI 90
E +I +
Sbjct: 123 EQFINKV 129
>gi|23111030 sorting nexin 12 [Homo sapiens]
Length = 162
Score = 31.2 bits (69), Expect = 0.57
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 26 VFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYK--VPDFPSKRLPN----------WRT 73
+F+++ C V RRYS+F L +++ K VP P K L +
Sbjct: 60 IFKLKESC------VRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEE 113
Query: 74 RGLEQRRQGLEAYIQGI 90
+E+RRQGLE +I I
Sbjct: 114 SFIEERRQGLEQFINKI 130
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 30.8 bits (68), Expect = 0.75
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 1 MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEV-----LCSGRRHTVPRRYSEFHALHKRIK 55
+ ++ I PE G + ++M +RV + S +V RR+S+F LH ++
Sbjct: 139 IFDIEIGVSDPEKVGDGMN---AYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLA 195
Query: 56 KLYK-----VPDFPSKRL-----------PNWRTRGLEQRRQGLEAYIQ 88
Y VP P K + + T +E+RR LE Y+Q
Sbjct: 196 SKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQ 244
>gi|38708169 sorting nexin 25 [Homo sapiens]
Length = 840
Score = 30.8 bits (68), Expect = 0.75
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 39 TVPRRYSEFHALHKRIKKLYKVPDFPSKRLPNWR--------TRGLEQRRQGLEAYIQGI 90
TVPRR SEF LH+++ + VP +LP+ + +E+ + L ++Q +
Sbjct: 548 TVPRRLSEFQNLHRKLSEC--VPSLKKVQLPSLSKLPFKSIDQKFMEKSKNQLNKFLQNL 605
Query: 91 LYLNQEVPKELL--------EFLRLRHFPTDPKASNWGTLREFLPGDSSSQQHQ 136
L + E L ++L++ + + + E LP D S Q +
Sbjct: 606 LSDERLCQSEALYAFLSPSPDYLKVIDVQGKKNSFSLSSFLERLPRDFFSHQEE 659
>gi|115298672 neutrophil cytosolic factor 1 [Homo sapiens]
Length = 390
Score = 30.4 bits (67), Expect = 0.98
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 40 VPRRYSEFHALHKRIKKLYKV------PD---FPSKRLPNW--RTRGLEQRRQGLEAYIQ 88
V RR++E + HK +K+++ + P+ P P W R E R+ L Y
Sbjct: 40 VYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCG 99
Query: 89 GILYLNQEVPK--ELLEFLRLR----HFPTDPKASNWGTLREFLPGDSSSQQHQRPVL 140
++ L ++ + LL+F ++R PTD + T G S++ P++
Sbjct: 100 TLMSLPTKISRCPHLLDFFKVRPDDLKLPTDNQTKKPETYLMPKDGKSTATDITGPII 157
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 29.6 bits (65), Expect = 1.7
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 110 FPTDPKASNWGTLRE-FLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVNGVLQGL 168
F D K G+ E L + Q RP F P P S PN VV+ + GL
Sbjct: 178 FKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF-----ADAPPPPSAPNPVVSSLGSGL 232
Query: 169 YSFSISPDKAQPKAACHPAPLPP 191
P P P P+PP
Sbjct: 233 ------PPPGMPPPGSFPPPVPP 249
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 29.6 bits (65), Expect = 1.7
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 137 RPVLSFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISPDKAQPKAACHPAPLPP 191
RPVL P P S+ VV+G + I+P + PAPLPP
Sbjct: 321 RPVLPPPAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPRSEEGAPRPPPAPLPP 375
>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
Length = 2087
Score = 29.6 bits (65), Expect = 1.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 21 EKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRI 54
E +V+ V++ C G+ V R Y +F L K +
Sbjct: 150 ESKELVYLVQIACQGKSWIVKRSYEDFRVLDKHL 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,264,531
Number of Sequences: 37866
Number of extensions: 457058
Number of successful extensions: 1320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 50
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.