Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 71274180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71274180 PLAC8-like 1 [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71274180 PLAC8-like 1 [Homo sapiens] 382 e-107
gi|26024195 cornifelin [Homo sapiens] 102 1e-22
gi|195222740 placenta-specific 8 [Homo sapiens] 71 4e-13
gi|195222737 placenta-specific 8 [Homo sapiens] 71 4e-13
gi|7706158 placenta-specific 8 [Homo sapiens] 71 4e-13
gi|239757282 PREDICTED: similar to Fc fragment of IgG binding pr... 30 1.1
gi|154146262 Fc fragment of IgG binding protein [Homo sapiens] 30 1.1
gi|41327760 ATPase, class II, type 9B [Homo sapiens] 30 1.1
gi|48475052 secreted frizzled-related protein 2 precursor [Homo ... 29 1.9
gi|16933525 unc5C [Homo sapiens] 28 4.2
gi|115298654 mutY homolog isoform 4 [Homo sapiens] 28 5.4
gi|115298652 mutY homolog isoform 4 [Homo sapiens] 28 5.4
gi|115298650 mutY homolog isoform 3 [Homo sapiens] 28 5.4
gi|115298648 mutY homolog isoform 2 [Homo sapiens] 28 5.4
gi|6912520 mutY homolog isoform 1 [Homo sapiens] 28 5.4
gi|190358497 mutY homolog isoform 5 [Homo sapiens] 28 5.4
gi|7706186 tumor necrosis factor receptor superfamily, member 12... 28 5.4
gi|29826325 adducin 1 (alpha) isoform d [Homo sapiens] 27 9.3
gi|29826323 adducin 1 (alpha) isoform c [Homo sapiens] 27 9.3
gi|29826321 adducin 1 (alpha) isoform b [Homo sapiens] 27 9.3
gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens] 27 9.3
gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo ... 27 9.3
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 27 9.3
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 27 9.3
>gi|71274180 PLAC8-like 1 [Homo sapiens]
Length = 177
Score = 382 bits (981), Expect = e-107
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MNWFGSNFFRCPEDLSLLNIYSPLLSHMSSEDEHFISNLRGHVPASAVVKQPVRGASGRT 60
MNWFGSNFFRCPEDLSLLNIYSPLLSHMSSEDEHFISNLRGHVPASAVVKQPVRGASGRT
Sbjct: 1 MNWFGSNFFRCPEDLSLLNIYSPLLSHMSSEDEHFISNLRGHVPASAVVKQPVRGASGRT 60
Query: 61 TITAIVQTGGGWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFAL 120
TITAIVQTGGGWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFAL
Sbjct: 61 TITAIVQTGGGWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFAL 120
Query: 121 RIGTRERHKIQGTLCEDWLAVHCCWAFSICQVARELKMRTSQVYEICAVPMTKDTLV 177
RIGTRERHKIQGTLCEDWLAVHCCWAFSICQVARELKMRTSQVYEICAVPMTKDTLV
Sbjct: 121 RIGTRERHKIQGTLCEDWLAVHCCWAFSICQVARELKMRTSQVYEICAVPMTKDTLV 177
>gi|26024195 cornifelin [Homo sapiens]
Length = 112
Score = 102 bits (255), Expect = 1e-22
Identities = 43/88 (48%), Positives = 57/88 (64%)
Query: 72 WSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQ 131
W TGL C D +C CG F P+CL C I+ +GEC C P LPG ++R G RER+ IQ
Sbjct: 24 WHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSIRTGMRERYHIQ 83
Query: 132 GTLCEDWLAVHCCWAFSICQVARELKMR 159
G++ DW A+ C ++CQ+ARELK+R
Sbjct: 84 GSVGHDWAALTFCLPCALCQMARELKIR 111
>gi|195222740 placenta-specific 8 [Homo sapiens]
Length = 115
Score = 71.2 bits (173), Expect = 4e-13
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 72 WSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQ 131
W TG+ D +C CG FC CL C +A EC L G++ A+R R R+ I
Sbjct: 26 WQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECC----LCGTSVAMRTLYRTRYGIP 81
Query: 132 GTLCEDWLAVHCCWAFSICQVARELKMR 159
G++C+D++A CC ++CQ+ R++ R
Sbjct: 82 GSICDDYMATLCCPHCTLCQIKRDINRR 109
>gi|195222737 placenta-specific 8 [Homo sapiens]
Length = 115
Score = 71.2 bits (173), Expect = 4e-13
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 72 WSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQ 131
W TG+ D +C CG FC CL C +A EC L G++ A+R R R+ I
Sbjct: 26 WQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECC----LCGTSVAMRTLYRTRYGIP 81
Query: 132 GTLCEDWLAVHCCWAFSICQVARELKMR 159
G++C+D++A CC ++CQ+ R++ R
Sbjct: 82 GSICDDYMATLCCPHCTLCQIKRDINRR 109
>gi|7706158 placenta-specific 8 [Homo sapiens]
Length = 115
Score = 71.2 bits (173), Expect = 4e-13
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 72 WSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQ 131
W TG+ D +C CG FC CL C +A EC L G++ A+R R R+ I
Sbjct: 26 WQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECC----LCGTSVAMRTLYRTRYGIP 81
Query: 132 GTLCEDWLAVHCCWAFSICQVARELKMR 159
G++C+D++A CC ++CQ+ R++ R
Sbjct: 82 GSICDDYMATLCCPHCTLCQIKRDINRR 109
>gi|239757282 PREDICTED: similar to Fc fragment of IgG binding
protein [Homo sapiens]
Length = 1403
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 69 GGGW-STGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGS 116
GG W + G +C D C CP C E + ++ G C PL PG+
Sbjct: 243 GGSWRAPGWDPLCWDE----CRGSCPTCPEDRLEQYEGPGFCGPLAPGT 287
>gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]
Length = 5405
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 69 GGGW-STGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGS 116
GG W + G +C D C CP C E + ++ G C PL PG+
Sbjct: 1841 GGSWRAPGWDPLCWDE----CRGSCPTCPEDRLEQYEGPGFCGPLAPGT 1885
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 69 GGGW-STGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGS 116
GG W + G +C D C CP C E + ++ G C PL PG+
Sbjct: 3042 GGSWRAPGWDPLCWDE----CRGSCPTCPEDRLEQYEGPGFCGPLAPGT 3086
>gi|41327760 ATPase, class II, type 9B [Homo sapiens]
Length = 1147
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 121 RIGTRERHKIQGTLCEDW--LAVHCC-WAFSICQVARELKMRT 160
RI R+R ++ +C+ W L CC W +IC+ +ELK RT
Sbjct: 76 RIMQRKRG-LEWFVCDGWKFLCTSCCGWLINICRRKKELKART 117
>gi|48475052 secreted frizzled-related protein 2 precursor [Homo
sapiens]
Length = 295
Score = 29.3 bits (64), Expect = 1.9
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 58 GRTTITAIVQTGGGWSTGLFSVCR-DRRICFCGLFCPMCLE 97
G T+ +++ G W + C D + C LF P+CL+
Sbjct: 65 GHETMKEVLEQAGAWIPLVMKQCHPDTKKFLCSLFAPVCLD 105
>gi|16933525 unc5C [Homo sapiens]
Length = 931
Score = 28.1 bits (61), Expect = 4.2
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 60 TTITAIVQTGGGWSTGL-FSVCRDR 83
TT T IV GGWST +SVC R
Sbjct: 251 TTATVIVYVNGGWSTWTEWSVCNSR 275
>gi|115298654 mutY homolog isoform 4 [Homo sapiens]
Length = 521
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 36 ISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFS------VCRDRRI 85
+ L GH+P +A Q + GR T AI G +TG+ +CR R I
Sbjct: 166 VEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAI 221
>gi|115298652 mutY homolog isoform 4 [Homo sapiens]
Length = 521
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 36 ISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFS------VCRDRRI 85
+ L GH+P +A Q + GR T AI G +TG+ +CR R I
Sbjct: 166 VEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAI 221
>gi|115298650 mutY homolog isoform 3 [Homo sapiens]
Length = 522
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 36 ISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFS------VCRDRRI 85
+ L GH+P +A Q + GR T AI G +TG+ +CR R I
Sbjct: 167 VEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAI 222
>gi|115298648 mutY homolog isoform 2 [Homo sapiens]
Length = 535
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 36 ISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFS------VCRDRRI 85
+ L GH+P +A Q + GR T AI G +TG+ +CR R I
Sbjct: 180 VEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAI 235
>gi|6912520 mutY homolog isoform 1 [Homo sapiens]
Length = 546
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 36 ISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFS------VCRDRRI 85
+ L GH+P +A Q + GR T AI G +TG+ +CR R I
Sbjct: 191 VEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAI 246
>gi|190358497 mutY homolog isoform 5 [Homo sapiens]
Length = 549
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 36 ISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFS------VCRDRRI 85
+ L GH+P +A Q + GR T AI G +TG+ +CR R I
Sbjct: 194 VEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAI 249
>gi|7706186 tumor necrosis factor receptor superfamily, member 12A
[Homo sapiens]
Length = 129
Score = 27.7 bits (60), Expect = 5.4
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 63 TAIVQTGGGWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGS---TFA 119
TA G WS L C D C CL C A L WP+L G+ TF
Sbjct: 33 TAPCSRGSSWSADL-DKCMDCASCRARPHSDFCLGCAAAPPAPFRLLWPILGGALSLTFV 91
Query: 120 L 120
L
Sbjct: 92 L 92
>gi|29826325 adducin 1 (alpha) isoform d [Homo sapiens]
Length = 662
Score = 26.9 bits (58), Expect = 9.3
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 20 IYSPLLSHMSSEDEHFI----SNLRGHVPASAVVKQPVRG--ASGRTTITAIVQTGGGWS 73
IY+ + + ++SE EHF+ L V AS++VK ++G +T + Q G
Sbjct: 165 IYNHITTRVNSEQEHFLIVPFGLLYSEVTASSLVKINLQGDIVDRGSTNLGVNQAGFTLH 224
Query: 74 TGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGT 133
+ +++ D + C + + C LLP S AL +G H G
Sbjct: 225 SAIYAARPDVK-------CVVHIHTPAGAAVSAMKC-GLLPISPEALSLGEVAYHDYHGI 276
Query: 134 LCED 137
L ++
Sbjct: 277 LVDE 280
>gi|29826323 adducin 1 (alpha) isoform c [Homo sapiens]
Length = 631
Score = 26.9 bits (58), Expect = 9.3
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 20 IYSPLLSHMSSEDEHFI----SNLRGHVPASAVVKQPVRG--ASGRTTITAIVQTGGGWS 73
IY+ + + ++SE EHF+ L V AS++VK ++G +T + Q G
Sbjct: 165 IYNHITTRVNSEQEHFLIVPFGLLYSEVTASSLVKINLQGDIVDRGSTNLGVNQAGFTLH 224
Query: 74 TGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGT 133
+ +++ D + C + + C LLP S AL +G H G
Sbjct: 225 SAIYAARPDVK-------CVVHIHTPAGAAVSAMKC-GLLPISPEALSLGEVAYHDYHGI 276
Query: 134 LCED 137
L ++
Sbjct: 277 LVDE 280
>gi|29826321 adducin 1 (alpha) isoform b [Homo sapiens]
Length = 768
Score = 26.9 bits (58), Expect = 9.3
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 20 IYSPLLSHMSSEDEHFI----SNLRGHVPASAVVKQPVRG--ASGRTTITAIVQTGGGWS 73
IY+ + + ++SE EHF+ L V AS++VK ++G +T + Q G
Sbjct: 165 IYNHITTRVNSEQEHFLIVPFGLLYSEVTASSLVKINLQGDIVDRGSTNLGVNQAGFTLH 224
Query: 74 TGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGT 133
+ +++ D + C + + C LLP S AL +G H G
Sbjct: 225 SAIYAARPDVK-------CVVHIHTPAGAAVSAMKC-GLLPISPEALSLGEVAYHDYHGI 276
Query: 134 LCED 137
L ++
Sbjct: 277 LVDE 280
>gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens]
Length = 737
Score = 26.9 bits (58), Expect = 9.3
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 20 IYSPLLSHMSSEDEHFI----SNLRGHVPASAVVKQPVRG--ASGRTTITAIVQTGGGWS 73
IY+ + + ++SE EHF+ L V AS++VK ++G +T + Q G
Sbjct: 165 IYNHITTRVNSEQEHFLIVPFGLLYSEVTASSLVKINLQGDIVDRGSTNLGVNQAGFTLH 224
Query: 74 TGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGT 133
+ +++ D + C + + C LLP S AL +G H G
Sbjct: 225 SAIYAARPDVK-------CVVHIHTPAGAAVSAMKC-GLLPISPEALSLGEVAYHDYHGI 276
Query: 134 LCED 137
L ++
Sbjct: 277 LVDE 280
>gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo
sapiens]
Length = 3003
Score = 26.9 bits (58), Expect = 9.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 69 GGGW-STGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGS 116
GG W + G +C D C CP C E + ++ G C PL G+
Sbjct: 1843 GGSWRAPGWDPLCWDE----CRGSCPTCPEDRLEQYEGPGFCGPLASGT 1887
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 26.9 bits (58), Expect = 9.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 135 CEDWLAVHCCWAFSICQV 152
CE+ HCCW S C +
Sbjct: 566 CEEEAMYHCCWNTSYCSI 583
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 26.9 bits (58), Expect = 9.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 135 CEDWLAVHCCWAFSICQV 152
CE+ HCCW S C +
Sbjct: 566 CEEEAMYHCCWNTSYCSI 583
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,292,535
Number of Sequences: 37866
Number of extensions: 317129
Number of successful extensions: 829
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 26
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.