BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|71274150 glycolipid transfer protein domain containing 1 [Homo sapiens] (214 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|71274150 glycolipid transfer protein domain containing 1 [Hom... 429 e-121 gi|62526120 glycolipid transfer protein domain containing 2 [Hom... 124 6e-29 gi|7705684 pleckstrin homology domain containing, family A (phos... 54 1e-07 gi|7705987 glycolipid transfer protein [Homo sapiens] 42 4e-04 gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 30 1.2 gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 30 1.2 gi|115430239 spectrin, beta, non-erythrocytic 4 isoform sigma5 [... 30 1.5 gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 30 1.5 gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 29 2.6 gi|50345997 E1A binding protein p300 [Homo sapiens] 29 3.4 gi|169173146 PREDICTED: hypothetical protein [Homo sapiens] 29 3.4 gi|113419909 PREDICTED: hypothetical protein [Homo sapiens] 29 3.4 gi|40806187 ADAM metallopeptidase with thrombospondin type 1 mot... 29 3.4 gi|166795301 prenylcysteine oxidase 1 [Homo sapiens] 28 5.8 gi|9966791 fascin 3 [Homo sapiens] 28 5.8 >gi|71274150 glycolipid transfer protein domain containing 1 [Homo sapiens] Length = 214 Score = 429 bits (1104), Expect = e-121 Identities = 214/214 (100%), Positives = 214/214 (100%) Query: 1 MDDSETGFNLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSK 60 MDDSETGFNLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSK Sbjct: 1 MDDSETGFNLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSK 60 Query: 61 LRIMERLRGGPQSEHYRSLQAMVAHELSNRLVDLERRSHHPESGCRTVLRLHRALHWLQL 120 LRIMERLRGGPQSEHYRSLQAMVAHELSNRLVDLERRSHHPESGCRTVLRLHRALHWLQL Sbjct: 61 LRIMERLRGGPQSEHYRSLQAMVAHELSNRLVDLERRSHHPESGCRTVLRLHRALHWLQL 120 Query: 121 FLEGLRTSPEDARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNVGPP 180 FLEGLRTSPEDARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNVGPP Sbjct: 121 FLEGLRTSPEDARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNVGPP 180 Query: 181 EQAVQMLGEALPFIQRVYNVSQKLYAEHSLLDLP 214 EQAVQMLGEALPFIQRVYNVSQKLYAEHSLLDLP Sbjct: 181 EQAVQMLGEALPFIQRVYNVSQKLYAEHSLLDLP 214 >gi|62526120 glycolipid transfer protein domain containing 2 [Homo sapiens] Length = 291 Score = 124 bits (311), Expect = 6e-29 Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 5/202 (2%) Query: 17 FKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLRGGPQSEHY 76 F L + +V L PY+A W+ LV FL LG++F+F +++ +K+ +E GP +EHY Sbjct: 89 FHASLKPEGDVGLSPYLAGWRALVEFLTPLGSVFAFATREAFTKVTDLEARVHGPDAEHY 148 Query: 77 RSLQAMVAHELSNRLVD---LERRSHHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDAR 133 SL AM A E L++ R SG RT+L LHRAL W QL L + T Sbjct: 149 WSLAAMAAWERRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGP 208 Query: 134 TSAL-CADSYNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNVGPPE-QAVQMLGEAL 191 + + C+D+Y A+L +HPW+VR+ +AF P R LE G E +A L A Sbjct: 209 EAGVQCSDAYRAALGPHHPWLVRQTARLAFLAFPGRRRLLELACPGATEAEARAALLRAA 268 Query: 192 PFIQRVYNVSQKLYAEHSLLDL 213 ++ VYN +Q L AE LL L Sbjct: 269 GTLEDVYNRTQSLLAERGLLQL 290 >gi|7705684 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 9 [Homo sapiens] Length = 391 Score = 53.9 bits (128), Expect = 1e-07 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 23 EKEEVLLDPYIASWKGLVRFLNSLG-TIFSFISKDVVSKLRIMERLRGGPQSEHYRSLQA 81 E + + ++AS +V L+ LG T+F+ + D+V ++ + + + E + +LQ Sbjct: 210 EDSGIPTEAFLASCCAVVPVLDKLGPTVFAPVKMDLVENIKKVNQ-KYITNKEEFTTLQK 268 Query: 82 MVAHELSNRLVDLERRSHHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDARTSALCADS 141 +V HE+ + + S +L L R L +L+ FL ++ +D +T+ ++ Sbjct: 269 IVLHEVEADVAQVRN------SATEALLWLKRGLKFLKGFLTEVKNGEKDIQTAL--NNA 320 Query: 142 YNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNV 177 Y +L +H WVVR +A P+ E F+ A+ V Sbjct: 321 YGKTLRQHHGWVVRGVFALALRATPSYEDFVAALTV 356 >gi|7705987 glycolipid transfer protein [Homo sapiens] Length = 209 Score = 42.0 bits (97), Expect = 4e-04 Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 13/164 (7%) Query: 21 LDEKEEVLLDPYIASWKGLVRFLNSLGT-IFSFISKDVVSKLRIMERLRGGPQSEHYRSL 79 L +++ P++ + L F + LG+ +F+ I D+ + ++ + ++ +R+L Sbjct: 12 LPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAK-FRTL 70 Query: 80 QAMVAHELSNRLVDLERRSHHPESGCRTVLR-LHRALHWLQLFLEGLRTSPEDARTSAL- 137 Q ++ E+ + E P+ G L L R L ++Q+FL+ + D L Sbjct: 71 QNIL--EVEKEMYGAE----WPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLI 124 Query: 138 ---CADSYNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNVG 178 +Y +L YH W+V++ A P + FL+A++ G Sbjct: 125 RVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKG 168 >gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] Length = 4363 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 121 FLEGLRTSPEDARTSALCADSYNASLAAYHPWV 153 FL+ +RTSPE L D YN +L+ + P++ Sbjct: 2736 FLQRVRTSPEGYAHFTLSGDYYNRALSGWEPFI 2768 >gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] Length = 4388 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 121 FLEGLRTSPEDARTSALCADSYNASLAAYHPWV 153 FL+ +RTSPE L D YN +L+ + P++ Sbjct: 2736 FLQRVRTSPEGYAHFTLSGDYYNRALSGWEPFI 2768 >gi|115430239 spectrin, beta, non-erythrocytic 4 isoform sigma5 [Homo sapiens] Length = 678 Score = 30.0 bits (66), Expect = 1.5 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 29/159 (18%) Query: 63 IMERLRGGPQSEHYRSLQAMVAHELSNRLVDLERRSHHP-------ESGCRTVLR----- 110 + ERL Q+E LQA+ H N+ + E ++H P +G LR Sbjct: 207 VQERLPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERAGALASLRSPEAE 266 Query: 111 -LHRALHWLQLFLEGLRTSPE---DARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLP 166 + R L LQ GLR + E +A + Y +A W L Sbjct: 267 AVRRGLEQLQSAWAGLREAAERRQQVLDAAFQVEQYYFDVAEVEAW------------LG 314 Query: 167 TREVFLEAMNVGPPEQA-VQMLGEALPFIQRVYNVSQKL 204 +E+ + + + G EQ+ +Q+L + L Q V N + + Sbjct: 315 EQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYEESI 353 >gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo sapiens] Length = 2564 Score = 30.0 bits (66), Expect = 1.5 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 29/159 (18%) Query: 63 IMERLRGGPQSEHYRSLQAMVAHELSNRLVDLERRSHHP-------ESGCRTVLR----- 110 + ERL Q+E LQA+ H N+ + E ++H P +G LR Sbjct: 1531 VQERLPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERAGALASLRSPEAE 1590 Query: 111 -LHRALHWLQLFLEGLRTSPE---DARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLP 166 + R L LQ GLR + E +A + Y +A W L Sbjct: 1591 AVRRGLEQLQSAWAGLREAAERRQQVLDAAFQVEQYYFDVAEVEAW------------LG 1638 Query: 167 TREVFLEAMNVGPPEQA-VQMLGEALPFIQRVYNVSQKL 204 +E+ + + + G EQ+ +Q+L + L Q V N + + Sbjct: 1639 EQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYEESI 1677 >gi|32171221 GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Homo sapiens] Length = 395 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/41 (41%), Positives = 22/41 (53%) Query: 129 PEDARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLPTRE 169 P A T AD A+L YHP + RA+ V+ TLP R+ Sbjct: 42 PAAAATPGPPADELYAALEDYHPAELYRALAVSGGTLPRRK 82 >gi|50345997 E1A binding protein p300 [Homo sapiens] Length = 2414 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/26 (53%), Positives = 17/26 (65%) Query: 87 LSNRLVDLERRSHHPESGCRTVLRLH 112 L NR+ D RR +HPESG TV +H Sbjct: 1302 LENRVNDFLRRQNHPESGEVTVRVVH 1327 >gi|169173146 PREDICTED: hypothetical protein [Homo sapiens] Length = 464 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 83 VAHELSNRLVDLERRSHHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDAR---TSALCA 139 V H++ L+ +E PE CR V + H L L+ +RT +D R TS C Sbjct: 215 VRHQVHETLLVVEPTHSSPEGSCREVPQAASKTHGL---LQAVRTQAQDKRPAVTSQPCP 271 Query: 140 DSYNASL 146 + SL Sbjct: 272 SAATHSL 278 >gi|113419909 PREDICTED: hypothetical protein [Homo sapiens] Length = 464 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 83 VAHELSNRLVDLERRSHHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDAR---TSALCA 139 V H++ L+ +E PE CR V + H L L+ +RT +D R TS C Sbjct: 215 VRHQVHETLLVVEPTHSSPEGSCREVPQAASKTHGL---LQAVRTQAQDKRPAVTSQPCP 271 Query: 140 DSYNASL 146 + SL Sbjct: 272 SAATHSL 278 >gi|40806187 ADAM metallopeptidase with thrombospondin type 1 motif, 18 preproprotein [Homo sapiens] Length = 1221 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 4 SETGFNLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRI 63 S+ G N++ ++V+ K+ +++ + + YI + +V L GTI S I+ VVS L + Sbjct: 289 SQKGLNVETLVVADKKMVEKHGKGNVTTYILTVMNMVSGLFKDGTIGSDINVVVVS-LIL 347 Query: 64 MERLRGGPQSEHY 76 +E+ GG H+ Sbjct: 348 LEQEPGGLLINHH 360 >gi|166795301 prenylcysteine oxidase 1 [Homo sapiens] Length = 505 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Query: 99 HHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDARTSALCADSYNASLAAYHPW 152 + P C +++ LH L+ +L G+ + SA+ A +NA+L AYH W Sbjct: 439 YKPPEKCPSII-LHDRLY----YLNGIECAASAMEMSAIAA--HNAALLAYHRW 485 >gi|9966791 fascin 3 [Homo sapiens] Length = 498 Score = 28.1 bits (61), Expect = 5.8 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 14/68 (20%) Query: 96 RRSHHPESGCRTVLRLHRALHW-LQLFLEG--LRTSPEDARTSALCADSYNASLAAYHPW 152 R SHH GC +LR HR W LQ + G L ++ +D C L+AYH W Sbjct: 88 RTSHH---GC-FLLRFHRNSKWTLQCLISGRYLESNGKDV----FCTSHV---LSAYHMW 136 Query: 153 VVRRAVTV 160 R A+ V Sbjct: 137 TPRPALHV 144 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,918,480 Number of Sequences: 37866 Number of extensions: 303682 Number of successful extensions: 624 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 613 Number of HSP's gapped (non-prelim): 15 length of query: 214 length of database: 18,247,518 effective HSP length: 98 effective length of query: 116 effective length of database: 14,536,650 effective search space: 1686251400 effective search space used: 1686251400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.