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Search of human proteins with 7019377
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7019377 FtsJ homolog 2 [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7019377 FtsJ homolog 2 [Homo sapiens] 499 e-142
gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens] 120 1e-27
gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens] 120 1e-27
gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens] 120 1e-27
gi|194097365 FtsJ homolog 3 [Homo sapiens] 102 3e-22
gi|153792086 FtsJ methyltransferase domain containing 1 [Homo sa... 32 0.66
gi|153791865 FtsJ methyltransferase domain containing 1 [Homo sa... 32 0.66
gi|10862701 ret proto-oncogene isoform c [Homo sapiens] 28 7.3
gi|10862703 ret proto-oncogene isoform a [Homo sapiens] 28 7.3
gi|95089461 discs large homolog 5 [Homo sapiens] 28 7.3
gi|209862791 zinc finger protein 90 [Homo sapiens] 28 7.3
gi|116812644 PBX/knotted 1 homeobox 2 [Homo sapiens] 28 7.3
gi|25286703 hypothetical protein LOC90231 [Homo sapiens] 28 7.3
gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo... 28 9.5
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 28 9.5
gi|217035158 zinc finger protein 780A isoform b [Homo sapiens] 28 9.5
gi|217035160 zinc finger protein 780A isoform b [Homo sapiens] 28 9.5
gi|217035156 zinc finger protein 780A isoform a [Homo sapiens] 28 9.5
gi|62865883 zinc finger protein 2 isoform b [Homo sapiens] 28 9.5
gi|62865881 zinc finger protein 2 isoform a [Homo sapiens] 28 9.5
>gi|7019377 FtsJ homolog 2 [Homo sapiens]
Length = 246
Score = 499 bits (1285), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL 60
MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL
Sbjct: 1 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL 60
Query: 61 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE 120
LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE
Sbjct: 61 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE 120
Query: 121 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV 180
GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV
Sbjct: 121 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV 180
Query: 181 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR
Sbjct: 181 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
Query: 241 KGTVKQ 246
KGTVKQ
Sbjct: 241 KGTVKQ 246
>gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 120 bits (301), Expect = 1e-27
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 40 RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99
RD + + AK +R RSAFKLL++++ Q+ + R +D AAPG+WSQV QK+ G+
Sbjct: 9 RDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS 68
Query: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159
G V+ VDL + PL G + D+T T++ I++ G AD+++ D AP+
Sbjct: 69 ------GHVVAVDLQAMAPLPGVVQI-QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
Query: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219
TG D+D L L L++ +L+PGG F+ K + G L +L F +V K
Sbjct: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
Query: 220 PEASRKESSEVYFLATQYHGRKGTV 244
P +SR S E + + Y +G +
Sbjct: 182 PRSSRNSSIEAFAVCQGYDPPEGFI 206
>gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 120 bits (301), Expect = 1e-27
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 40 RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99
RD + + AK +R RSAFKLL++++ Q+ + R +D AAPG+WSQV QK+ G+
Sbjct: 9 RDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS 68
Query: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159
G V+ VDL + PL G + D+T T++ I++ G AD+++ D AP+
Sbjct: 69 ------GHVVAVDLQAMAPLPGVVQI-QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
Query: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219
TG D+D L L L++ +L+PGG F+ K + G L +L F +V K
Sbjct: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
Query: 220 PEASRKESSEVYFLATQYHGRKGTV 244
P +SR S E + + Y +G +
Sbjct: 182 PRSSRNSSIEAFAVCQGYDPPEGFI 206
>gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]
Length = 329
Score = 120 bits (301), Expect = 1e-27
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 40 RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99
RD + + AK +R RSAFKLL++++ Q+ + R +D AAPG+WSQV QK+ G+
Sbjct: 9 RDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS 68
Query: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159
G V+ VDL + PL G + D+T T++ I++ G AD+++ D AP+
Sbjct: 69 ------GHVVAVDLQAMAPLPGVVQI-QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
Query: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219
TG D+D L L L++ +L+PGG F+ K + G L +L F +V K
Sbjct: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
Query: 220 PEASRKESSEVYFLATQYHGRKGTV 244
P +SR S E + + Y +G +
Sbjct: 182 PRSSRNSSIEAFAVCQGYDPPEGFI 206
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 102 bits (254), Expect = 3e-22
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 40 RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99
RD F AK YR RSAFKL+++N R Q L+ +LD AAPG W QVA + + +
Sbjct: 12 RDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVS-- 69
Query: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159
++GVDL+ I PL L D+T R Q + + L + DV+L+D APN
Sbjct: 70 ------SLIVGVDLVPIKPLPNVVTL-QQDITTERCRQALRKELKTWKVDVVLNDGAPNV 122
Query: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219
D L L L + D L GG+F+ K + + L + F+ V+ K
Sbjct: 123 GASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATK 182
Query: 220 PEASRKESSEVY 231
P+ASR ES+E++
Sbjct: 183 PQASRHESAEIF 194
>gi|153792086 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 31.6 bits (70), Expect = 0.66
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 188 GGTFLCKTWAGSQ--SRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRK 241
GG+F+ K + + S L L F V + KP S+ +SEVY + Y GR+
Sbjct: 269 GGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGRE 324
>gi|153791865 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 31.6 bits (70), Expect = 0.66
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 188 GGTFLCKTWAGSQ--SRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRK 241
GG+F+ K + + S L L F V + KP S+ +SEVY + Y GR+
Sbjct: 269 GGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGRE 324
>gi|10862701 ret proto-oncogene isoform c [Homo sapiens]
Length = 1072
Score = 28.1 bits (61), Expect = 7.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 98 GTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDP 133
G +P P G G + FP E F P D+ DP
Sbjct: 593 GHEPGEPRGIKAGYGTCNCFPEEEKCFCEPEDIQDP 628
>gi|10862703 ret proto-oncogene isoform a [Homo sapiens]
Length = 1114
Score = 28.1 bits (61), Expect = 7.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 98 GTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDP 133
G +P P G G + FP E F P D+ DP
Sbjct: 593 GHEPGEPRGIKAGYGTCNCFPEEEKCFCEPEDIQDP 628
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 28.1 bits (61), Expect = 7.3
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 58 FKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF 117
F L++V R +L V CG + + + N+ GT P + + + L ++
Sbjct: 905 FGLVDVRGRRPLLPFETEVGPCGVGEASLDKADSEGSNSGGTWPKAMLSSTAVPEKLSVY 964
Query: 118 --PLEGATFLCPADVTDPRTSQRILEVLPG 145
P + + P P+T +I +LPG
Sbjct: 965 KKPKQRKSIFDPNTFKRPQTPPKIDYLLPG 994
>gi|209862791 zinc finger protein 90 [Homo sapiens]
Length = 601
Score = 28.1 bits (61), Expect = 7.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 54 CRSAFKLLEVNERHQILRPGLRVL---DCGAAPGAWSQVAVQKVNAAGTDP 101
C AFK V +H+I+ G + +CG A SQ+ K++ G P
Sbjct: 514 CGKAFKRSSVLSKHKIIHTGAKPYKCEECGKAFKRSSQLTSHKISHTGEKP 564
>gi|116812644 PBX/knotted 1 homeobox 2 [Homo sapiens]
Length = 472
Score = 28.1 bits (61), Expect = 7.3
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE-----RHQILRPGLRVLDC 79
K+ T WL +HL P+ + ++ LL+VN R +IL+P L +
Sbjct: 297 KHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNP 356
Query: 80 GAAPGA 85
AP A
Sbjct: 357 DPAPKA 362
>gi|25286703 hypothetical protein LOC90231 [Homo sapiens]
Length = 634
Score = 28.1 bits (61), Expect = 7.3
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 30 AEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGL----RVLDCGA-APG 84
A LW+T R+P V V + R L E E +LR GL R L G+ PG
Sbjct: 104 ANRLWVTPGEREPAVAPDFVPFVQLRPLSALAEAGEAVLLLREGLLRRVRCLQLGSPGPG 163
Query: 85 AWSQVAVQKVNAAGTDPSSPVGFVLG 110
AAG P+S G G
Sbjct: 164 P---------VAAGPGPASVSGLAAG 180
>gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo
sapiens]
Length = 815
Score = 27.7 bits (60), Expect = 9.5
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 156 APNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNV 215
AP+ ++++ D + CL++ + P G L +T + RR + R + F
Sbjct: 366 APHRGVAKEIEFDEINDTCLSVATFLPYSSLTSGNVLQRTLSARMRRRERERSPDSFSMR 425
Query: 216 RIIKP 220
R + P
Sbjct: 426 RTLPP 430
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 27.7 bits (60), Expect = 9.5
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 156 APNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNV 215
AP+ ++++ D + CL++ + P G L +T + RR + R + F
Sbjct: 366 APHRGVAKEIEFDEINDTCLSVATFLPYSSLTSGNVLQRTLSARMRRRERERSPDSFSMR 425
Query: 216 RIIKP 220
R + P
Sbjct: 426 RTLPP 430
>gi|217035158 zinc finger protein 780A isoform b [Homo sapiens]
Length = 641
Score = 27.7 bits (60), Expect = 9.5
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 13 QRQGFHTVGS--RCKN--RTGAEHLWLTRHLRDPFVKAAK-VESYRCRSAFKLLEVNERH 67
Q Q HT CK + H+ TRH + F K E C AF LL + RH
Sbjct: 182 QHQSIHTGEKPFECKECGKAFRLHIQFTRHQK--FHTGEKPFECNECGKAFSLLTLLNRH 239
Query: 68 QILRPGLRVLDC 79
+ + G ++ +C
Sbjct: 240 KNIHTGEKLFEC 251
>gi|217035160 zinc finger protein 780A isoform b [Homo sapiens]
Length = 641
Score = 27.7 bits (60), Expect = 9.5
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 13 QRQGFHTVGS--RCKN--RTGAEHLWLTRHLRDPFVKAAK-VESYRCRSAFKLLEVNERH 67
Q Q HT CK + H+ TRH + F K E C AF LL + RH
Sbjct: 182 QHQSIHTGEKPFECKECGKAFRLHIQFTRHQK--FHTGEKPFECNECGKAFSLLTLLNRH 239
Query: 68 QILRPGLRVLDC 79
+ + G ++ +C
Sbjct: 240 KNIHTGEKLFEC 251
>gi|217035156 zinc finger protein 780A isoform a [Homo sapiens]
Length = 642
Score = 27.7 bits (60), Expect = 9.5
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 13 QRQGFHTVGS--RCKN--RTGAEHLWLTRHLRDPFVKAAK-VESYRCRSAFKLLEVNERH 67
Q Q HT CK + H+ TRH + F K E C AF LL + RH
Sbjct: 183 QHQSIHTGEKPFECKECGKAFRLHIQFTRHQK--FHTGEKPFECNECGKAFSLLTLLNRH 240
Query: 68 QILRPGLRVLDC 79
+ + G ++ +C
Sbjct: 241 KNIHTGEKLFEC 252
>gi|62865883 zinc finger protein 2 isoform b [Homo sapiens]
Length = 383
Score = 27.7 bits (60), Expect = 9.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 35 LTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVA 90
LTRH R + E ++C AF + RHQ++ G + +C A+ V+
Sbjct: 230 LTRHQRI-HTGESPYECHQCGKAFSQKSILTRHQLIHTGRKPYECNECGKAFYGVS 284
>gi|62865881 zinc finger protein 2 isoform a [Homo sapiens]
Length = 425
Score = 27.7 bits (60), Expect = 9.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 35 LTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVA 90
LTRH R + E ++C AF + RHQ++ G + +C A+ V+
Sbjct: 272 LTRHQRI-HTGESPYECHQCGKAFSQKSILTRHQLIHTGRKPYECNECGKAFYGVS 326
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,972,696
Number of Sequences: 37866
Number of extensions: 436913
Number of successful extensions: 1160
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 35
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.