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Search of human proteins with 13899247
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13899247 retbindin isoform 2 [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13899247 retbindin isoform 2 [Homo sapiens] 546 e-156
gi|124486584 retbindin isoform 1 [Homo sapiens] 487 e-138
gi|112382370 folate receptor 3 precursor [Homo sapiens] 39 0.003
gi|166064056 folate receptor 2 precursor [Homo sapiens] 37 0.023
gi|166064054 folate receptor 2 precursor [Homo sapiens] 37 0.023
gi|166064052 folate receptor 2 precursor [Homo sapiens] 37 0.023
gi|166064050 folate receptor 2 precursor [Homo sapiens] 37 0.023
gi|9257217 folate receptor 1 precursor [Homo sapiens] 36 0.030
gi|9257215 folate receptor 1 precursor [Homo sapiens] 36 0.030
gi|9257213 folate receptor 1 precursor [Homo sapiens] 36 0.030
gi|9257207 folate receptor 1 precursor [Homo sapiens] 36 0.030
gi|9257205 folate receptor 1 precursor [Homo sapiens] 36 0.030
gi|4758400 folate receptor 1 precursor [Homo sapiens] 36 0.030
gi|122937406 folate receptor 4 (delta) homolog [Homo sapiens] 36 0.030
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 33 0.19
gi|45433499 zinc finger, DHHC-type containing 18 [Homo sapiens] 33 0.19
gi|4758974 persephin precursor [Homo sapiens] 33 0.25
gi|145309320 forkhead box Q1 [Homo sapiens] 32 0.43
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 32 0.43
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 32 0.43
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 32 0.43
gi|13435397 PHD finger protein 1 isoform b [Homo sapiens] 32 0.43
gi|62548862 matrilin 2 isoform b precursor [Homo sapiens] 32 0.56
gi|62548860 matrilin 2 isoform a precursor [Homo sapiens] 32 0.56
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 32 0.56
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 32 0.56
gi|239753760 PREDICTED: hypothetical protein, partial [Homo sapi... 31 0.95
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 31 0.95
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
>gi|13899247 retbindin isoform 2 [Homo sapiens]
Length = 261
Score = 546 bits (1406), Expect = e-156
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MDEALETQLKTSRGRFSATESLPTLELLSQVDMDCRVHMRPIGLTWVLQLTLAWILLEAC 60
MDEALETQLKTSRGRFSATESLPTLELLSQVDMDCRVHMRPIGLTWVLQLTLAWILLEAC
Sbjct: 1 MDEALETQLKTSRGRFSATESLPTLELLSQVDMDCRVHMRPIGLTWVLQLTLAWILLEAC 60
Query: 61 GGSRPLQARSQQHHGLAADLGKGKLHLAGPCCPSEMDTTETSGPGNHPERCGVPSPECES 120
GGSRPLQARSQQHHGLAADLGKGKLHLAGPCCPSEMDTTETSGPGNHPERCGVPSPECES
Sbjct: 61 GGSRPLQARSQQHHGLAADLGKGKLHLAGPCCPSEMDTTETSGPGNHPERCGVPSPECES 120
Query: 121 FLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITCGPTWLPLSEKRGCEPS 180
FLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITCGPTWLPLSEKRGCEPS
Sbjct: 121 FLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITCGPTWLPLSEKRGCEPS 180
Query: 181 CLTYGQTFADGTDLCRSALGHALPVAAPGARHCFNISISAVPRPRPGRRGREAPSRRSRS 240
CLTYGQTFADGTDLCRSALGHALPVAAPGARHCFNISISAVPRPRPGRRGREAPSRRSRS
Sbjct: 181 CLTYGQTFADGTDLCRSALGHALPVAAPGARHCFNISISAVPRPRPGRRGREAPSRRSRS 240
Query: 241 PRTSILDAAGSGSGSGSGSGP 261
PRTSILDAAGSGSGSGSGSGP
Sbjct: 241 PRTSILDAAGSGSGSGSGSGP 261
>gi|124486584 retbindin isoform 1 [Homo sapiens]
Length = 229
Score = 487 bits (1253), Expect = e-138
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 33 MDCRVHMRPIGLTWVLQLTLAWILLEACGGSRPLQARSQQHHGLAADLGKGKLHLAGPCC 92
MDCRVHMRPIGLTWVLQLTLAWILLEACGGSRPLQARSQQHHGLAADLGKGKLHLAGPCC
Sbjct: 1 MDCRVHMRPIGLTWVLQLTLAWILLEACGGSRPLQARSQQHHGLAADLGKGKLHLAGPCC 60
Query: 93 PSEMDTTETSGPGNHPERCGVPSPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQ 152
PSEMDTTETSGPGNHPERCGVPSPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQ
Sbjct: 61 PSEMDTTETSGPGNHPERCGVPSPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQ 120
Query: 153 AWFANCEDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGARH 212
AWFANCEDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGARH
Sbjct: 121 AWFANCEDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGARH 180
Query: 213 CFNISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSGSGP 261
CFNISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSGSGP
Sbjct: 181 CFNISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSGSGP 229
>gi|112382370 folate receptor 3 precursor [Homo sapiens]
Length = 245
Score = 39.3 bits (90), Expect = 0.003
Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 52/250 (20%)
Query: 44 LTWVLQLTLAWILLEACGGSRPLQARSQ----------QHHGLAADLGKGKLHLAGPCCP 93
+ W + L L+ A G ++P AR++ +HH + L G C P
Sbjct: 3 MAWQMMQLLLLALVTAAGSAQPRSARARTDLLNVCMNAKHHKTQPS---PEDELYGQCSP 59
Query: 94 SEMDTTETSGPGNHPER------------CGVPSPECES-FLEH-------------LQR 127
+ + T+ + CG P C+ F++ +++
Sbjct: 60 WKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQ 119
Query: 128 ALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTWLPLSEKRGCEPSC 181
+S + R+L V PLC+E C+ W+ +C TC G W + C
Sbjct: 120 VNQSWRKERILNV----PLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGALC 175
Query: 182 LTYGQTFADGTDLCRSALGHALPVA--APGARHCFNISI-SAVPRPRPGRRGREAPSRRS 238
T+ F LC H+ V+ + G+ C + SA P A + +
Sbjct: 176 STFESYFPTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAMNA 235
Query: 239 RSPRTSILDA 248
+P I+D+
Sbjct: 236 GAPSRGIIDS 245
>gi|166064056 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R L V PLC+E CQ W+ +C TC G W
Sbjct: 104 SPNLGPWIQQVNQSWRKE---RFLDV----PLCKEDCQRWWEDCHTSHTCKSNWHRGWDW 156
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K C T+ F LC H+ V+ + G+ C +
Sbjct: 157 TSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRCIQM 206
>gi|166064054 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R L V PLC+E CQ W+ +C TC G W
Sbjct: 104 SPNLGPWIQQVNQSWRKE---RFLDV----PLCKEDCQRWWEDCHTSHTCKSNWHRGWDW 156
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K C T+ F LC H+ V+ + G+ C +
Sbjct: 157 TSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRCIQM 206
>gi|166064052 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R L V PLC+E CQ W+ +C TC G W
Sbjct: 104 SPNLGPWIQQVNQSWRKE---RFLDV----PLCKEDCQRWWEDCHTSHTCKSNWHRGWDW 156
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K C T+ F LC H+ V+ + G+ C +
Sbjct: 157 TSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRCIQM 206
>gi|166064050 folate receptor 2 precursor [Homo sapiens]
Length = 255
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R L V PLC+E CQ W+ +C TC G W
Sbjct: 104 SPNLGPWIQQVNQSWRKE---RFLDV----PLCKEDCQRWWEDCHTSHTCKSNWHRGWDW 156
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K C T+ F LC H+ V+ + G+ C +
Sbjct: 157 TSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRCIQM 206
>gi|9257217 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.030
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R+L V PLC+E C+ W+ +C TC G W
Sbjct: 110 SPNLGPWIQQVDQSWRKE---RVLNV----PLCKEDCEQWWEDCRTSYTCKSNWHKGWNW 162
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K +C + F T LC H+ V+ + G+ C +
Sbjct: 163 TSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQM 212
>gi|9257215 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.030
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R+L V PLC+E C+ W+ +C TC G W
Sbjct: 110 SPNLGPWIQQVDQSWRKE---RVLNV----PLCKEDCEQWWEDCRTSYTCKSNWHKGWNW 162
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K +C + F T LC H+ V+ + G+ C +
Sbjct: 163 TSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQM 212
>gi|9257213 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.030
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R+L V PLC+E C+ W+ +C TC G W
Sbjct: 110 SPNLGPWIQQVDQSWRKE---RVLNV----PLCKEDCEQWWEDCRTSYTCKSNWHKGWNW 162
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K +C + F T LC H+ V+ + G+ C +
Sbjct: 163 TSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQM 212
>gi|9257207 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.030
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R+L V PLC+E C+ W+ +C TC G W
Sbjct: 110 SPNLGPWIQQVDQSWRKE---RVLNV----PLCKEDCEQWWEDCRTSYTCKSNWHKGWNW 162
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K +C + F T LC H+ V+ + G+ C +
Sbjct: 163 TSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQM 212
>gi|9257205 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.030
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R+L V PLC+E C+ W+ +C TC G W
Sbjct: 110 SPNLGPWIQQVDQSWRKE---RVLNV----PLCKEDCEQWWEDCRTSYTCKSNWHKGWNW 162
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K +C + F T LC H+ V+ + G+ C +
Sbjct: 163 TSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQM 212
>gi|4758400 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.030
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 115 SPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITC------GPTW 168
SP +++ + ++ R R+L V PLC+E C+ W+ +C TC G W
Sbjct: 110 SPNLGPWIQQVDQSWRKE---RVLNV----PLCKEDCEQWWEDCRTSYTCKSNWHKGWNW 162
Query: 169 LPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVA--APGARHCFNI 216
K +C + F T LC H+ V+ + G+ C +
Sbjct: 163 TSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQM 212
>gi|122937406 folate receptor 4 (delta) homolog [Homo sapiens]
Length = 243
Score = 36.2 bits (82), Expect = 0.030
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 145 PLCEELCQAWFANCEDDITCGPTWLP----LSEKRGCE--PSCLTYGQTFADGTDLCRSA 198
PLC+E C+ W+ +C TC W K C CL + F DLC
Sbjct: 123 PLCQEDCEEWWEDCRMSYTCKSNWRGGWDWSQGKNRCPKGAQCLPFSHYFPTPADLCEKT 182
Query: 199 LGHALPVAAPGARH 212
++ A+P R+
Sbjct: 183 WSNSFK-ASPERRN 195
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 33.5 bits (75), Expect = 0.19
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 197 SALGHA-LPVAAPGARHCFNISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGS 255
+AL HA L + GARH + PRP RGR R +P S A S GS
Sbjct: 836 AALSHARLRSNSIGARH-------STPRPLDAGRGRRLGGPRDPAPEKS---RASSSGGS 885
Query: 256 GSGSG 260
G GSG
Sbjct: 886 GGGSG 890
>gi|45433499 zinc finger, DHHC-type containing 18 [Homo sapiens]
Length = 388
Score = 33.5 bits (75), Expect = 0.19
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 206 AAPGARHCFNISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSGS 259
A+PGAR +A P P PG AP PR S ++GSGSGSGSGS
Sbjct: 18 ASPGARRP---GPAASPTPGPG----PAPPAAPAPPRWS---SSGSGSGSGSGS 61
>gi|4758974 persephin precursor [Homo sapiens]
Length = 156
Score = 33.1 bits (74), Expect = 0.25
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 55 ILLEACGGSRPLQARSQQHHGLAADLGKGKLHLAGPCC 92
++ C GS P AR+Q LA G+G+ H GPCC
Sbjct: 88 VIFRYCAGSCPRGARTQHGLALARLQGQGRAH-GGPCC 124
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 32.3 bits (72), Expect = 0.43
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 187 TFADGT-DLCRSALGHALPVAAPGARHCFNISISAVPRPRPGRRGREAP-SRRSRSPRTS 244
TFADG R L H PV APG R + A P P P AP S R RSP
Sbjct: 203 TFADGVFRRRRKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPA-----APASPRMRSPARQ 257
Query: 245 ILDAAGSGSGSGS 257
A+ +G S S
Sbjct: 258 EERASPAGKFSSS 270
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 32.3 bits (72), Expect = 0.43
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 207 APGARHCFNISISAVPRPRPGRRG---------------REAPSRRSRSPRTSILDAAGS 251
APG F + +A RPR G G REA R PR AAG
Sbjct: 102 APGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR----GAAGD 157
Query: 252 GSGSGSGSGP 261
G+G+GP
Sbjct: 158 VGFGGAGTGP 167
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 32.3 bits (72), Expect = 0.43
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 207 APGARHCFNISISAVPRPRPGRRG---------------REAPSRRSRSPRTSILDAAGS 251
APG F + +A RPR G G REA R PR AAG
Sbjct: 102 APGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR----GAAGD 157
Query: 252 GSGSGSGSGP 261
G+G+GP
Sbjct: 158 VGFGGAGTGP 167
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 32.3 bits (72), Expect = 0.43
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 207 APGARHCFNISISAVPRPRPGRRG---------------REAPSRRSRSPRTSILDAAGS 251
APG F + +A RPR G G REA R PR AAG
Sbjct: 102 APGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR----GAAGD 157
Query: 252 GSGSGSGSGP 261
G+G+GP
Sbjct: 158 VGFGGAGTGP 167
>gi|13435397 PHD finger protein 1 isoform b [Homo sapiens]
Length = 567
Score = 32.3 bits (72), Expect = 0.43
Identities = 58/207 (28%), Positives = 72/207 (34%), Gaps = 39/207 (18%)
Query: 61 GGSRPLQARSQQHHGLAADLGKGKLHLAGPCCPSEMDTTETSGPGNHPERCGVPSPECES 120
G SRPL R + KGK+ GP S N PE P+ +
Sbjct: 360 GVSRPLGKRRRPEPEPLRRRQKGKVEELGP----------PSAVRNQPE------PQEQR 403
Query: 121 FLEHLQRALRSRFRLRLLGVRQAQPLCEELCQ--AWFANCEDDITCGPTWLPLSEKRGCE 178
HLQRAL++ V P + Q + + D C P+ P+
Sbjct: 404 ERAHLQRALQA-------SVSPPSPSPNQSYQGSSGYNFRPTDARCLPS-SPIRMFASFH 455
Query: 179 PSCLTYGQTFADGT-DLCRSALGHALPVAAP-GARHCFNISISAVPRPRPGRRGREAPSR 236
PS T G + G D L P P A H S S+V P PG R AP
Sbjct: 456 PSASTAGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPS 515
Query: 237 ---RSRSPRTSILDAAGSGSGSGSGSG 260
RS SP G+G G G G
Sbjct: 516 PLCRSLSP--------GTGGGVRGGVG 534
>gi|62548862 matrilin 2 isoform b precursor [Homo sapiens]
Length = 937
Score = 32.0 bits (71), Expect = 0.56
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 151 CQAWFANCEDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGA 210
C + +A ED C SE GCE C+ ADG+ LC+ G AL P
Sbjct: 305 CYSGYALAEDGKRCVAVDYCASENHGCEHECVN-----ADGSYLCQCHEGFAL---NPDK 356
Query: 211 RHCFNISISA 220
+ C I A
Sbjct: 357 KTCTKIDYCA 366
Score = 28.9 bits (63), Expect = 4.7
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Query: 147 CEELC----QAWFANC-------EDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLC 195
CE+LC ++ C ED TC L GCE SC+ ++FA C
Sbjct: 454 CEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFA-----C 508
Query: 196 RSALGHAL 203
+ GH L
Sbjct: 509 QCPEGHVL 516
>gi|62548860 matrilin 2 isoform a precursor [Homo sapiens]
Length = 956
Score = 32.0 bits (71), Expect = 0.56
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 151 CQAWFANCEDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGA 210
C + +A ED C SE GCE C+ ADG+ LC+ G AL P
Sbjct: 305 CYSGYALAEDGKRCVAVDYCASENHGCEHECVN-----ADGSYLCQCHEGFAL---NPDK 356
Query: 211 RHCFNISISA 220
+ C I A
Sbjct: 357 KTCTKIDYCA 366
Score = 28.9 bits (63), Expect = 4.7
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Query: 147 CEELC----QAWFANC-------EDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLC 195
CE+LC ++ C ED TC L GCE SC+ ++FA C
Sbjct: 454 CEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFA-----C 508
Query: 196 RSALGHAL 203
+ GH L
Sbjct: 509 QCPEGHVL 516
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 32.0 bits (71), Expect = 0.56
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 216 ISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSGSG 260
+S S + +PG+ G + SR R R+ + GSG G G G G
Sbjct: 1 MSSSVRRKGKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGG 45
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 32.0 bits (71), Expect = 0.56
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 27/154 (17%)
Query: 92 CPSEMDTTETSGPGNHP--------ERCGVPSP---ECESFLEHLQRALRSR-----FRL 135
CP+ + E +GP P R G PS E+ L+RAL +R F +
Sbjct: 165 CPAPARSPEPAGPAPFPLPALPLPPGREGGPSAAERRLEALTRELERALEARTARDYFGI 224
Query: 136 RL---LGVRQAQPLCEELCQAWFANCEDDITC-----GPTWLPLSEKRGCEPSCLTYG-Q 186
+ LG+ AQ C+ + + +C +C G + + EK C+ L G Q
Sbjct: 225 CIKCGLGIYGAQQACQAMGSLYHTDCFTCDSCGRRLRGKAFYNVGEKVYCQEDFLYSGFQ 284
Query: 187 TFADGTDLCRSALGHALPVAAPGARH--CFNISI 218
AD +C + + A + H CF S+
Sbjct: 285 QTADKCSVCGHLIMEMILQALGKSYHPGCFRCSV 318
>gi|239753760 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 267
Score = 31.2 bits (69), Expect = 0.95
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 101 TSGPGNHPERCGVPSPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCED 160
T P P C + SP S+ + S L+L G + A + + E
Sbjct: 142 TRSPDARPSNCNISSPRVSSYTASTWN-ISSPPGLQLHGPQTATLAPHRVSRCTALKLEH 200
Query: 161 DITCGPT--WLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGAR 211
+ G T WLP G PS + + L H LP +PGAR
Sbjct: 201 QLPTGYTAAWLPAGSP-GARPSNCNISSCWVSSCTALK--LEHQLPARSPGAR 250
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.95
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 217 SISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGS-GSGP 261
S ++ PR R RR R AP R S + ++ SGSG G+ G GP
Sbjct: 398 SSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGP 443
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 224 PRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSG 258
PR GRRG P RS R +L A G+ G G
Sbjct: 15 PRRGRRGERRPGLRSEGRRKGLLAAEAGGAVLGGG 49
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 224 PRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSG 258
PR GRRG P RS R +L A G+ G G
Sbjct: 15 PRRGRRGERRPGLRSEGRRKGLLAAEAGGAVLGGG 49
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,458,602
Number of Sequences: 37866
Number of extensions: 686589
Number of successful extensions: 3305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3227
Number of HSP's gapped (non-prelim): 121
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.