Guide to the Human Genome
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Name: RTBDN Sequence: fasta or formatted (229aa) NCBI GI: 124486584
Description:

retbindin isoform 1

Referenced in:

Crystallins and Other Eye Proteins

Other entries for this name:
alt prot [261aa] retbindin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         20           2
 C cysteine            6.1         14           2
 D aspartate           3.5          8           2
 E glutamate           5.7         13           2
 F phenylalanine       2.2          5           1
 G glycine            10.9         25           2
 H histidine           3.5          8           2
 I isoleucine          2.6          6           1
 K lysine              1.3          3           1
 L leucine            11.4         26           2
 M methionine          1.3          3           1
 N asparagine          1.3          3           1
 P proline             8.7         20           1
 Q glutamine           3.9          9           2
 R arginine           10.0         23           2
 S serine              9.2         21           1
 T threonine           4.8         11           2
 V valine              2.6          6           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retbindin isoform 1 
RTBDN                 1.000   retbindin isoform 2 
FOLR3                 0.030   folate receptor 3 precursor 
FOLR2                 0.026   folate receptor 2 precursor 
FOLR2                 0.026   folate receptor 2 precursor 
FOLR2                 0.026   folate receptor 2 precursor 
FOLR2                 0.026   folate receptor 2 precursor 
FOLR1                 0.024   folate receptor 1 precursor 
FOLR1                 0.024   folate receptor 1 precursor 
FOLR1                 0.024   folate receptor 1 precursor 
FOLR1                 0.024   folate receptor 1 precursor 
FOLR1                 0.024   folate receptor 1 precursor 
FOLR1                 0.024   folate receptor 1 precursor 
FOLR4                 0.024   folate receptor 4 (delta) homolog 
MAST3                 0.017   microtubule associated serine/threonine kinase 3 [H...
ZDHHC18               0.017   zinc finger, DHHC-type containing 18 
PSPN                  0.017   persephin precursor 
FOXQ1                 0.015   forkhead box Q1 
LOC100128943          0.015   PREDICTED: similar to hCG2038853 
LOC100128943          0.015   PREDICTED: similar to hCG2038853 
LOC100128943          0.015   PREDICTED: similar to hCG2038853 
PHF1                  0.015   PHD finger protein 1 isoform b 
MATN2                 0.015   matrilin 2 isoform b precursor 
MATN2                 0.015   matrilin 2 isoform a precursor 
DHX57                 0.015   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
WTIP                  0.015   Wilms tumor 1 interacting protein 
LOC727978             0.013   PREDICTED: hypothetical protein, partial 
FLJ37078              0.013   hypothetical protein LOC222183 
LOC100292591          0.013   PREDICTED: hypothetical protein 
LOC100287994          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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