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Search of human proteins with 13786129
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens] 470 e-133
gi|4758996 Ras-related protein Rab-33A [Homo sapiens] 265 2e-71
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 156 2e-38
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 155 3e-38
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 150 9e-37
gi|16933567 mel transforming oncogene [Homo sapiens] 149 2e-36
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 148 4e-36
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 148 4e-36
gi|50234889 RAB43 protein [Homo sapiens] 145 4e-35
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 144 6e-35
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 143 1e-34
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 141 5e-34
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 140 1e-33
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens] 139 2e-33
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 138 3e-33
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 138 3e-33
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 138 3e-33
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 138 3e-33
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 134 5e-32
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 133 1e-31
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 132 2e-31
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 131 5e-31
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 129 2e-30
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens] 129 3e-30
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 128 5e-30
gi|19923483 GTPase Rab14 [Homo sapiens] 127 1e-29
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 126 1e-29
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 125 2e-29
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 125 2e-29
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 122 2e-28
>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
Length = 229
Score = 470 bits (1210), Expect = e-133
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MAEEMESSLEASFSSSGAVSGASGFLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD 60
MAEEMESSLEASFSSSGAVSGASGFLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD
Sbjct: 1 MAEEMESSLEASFSSSGAVSGASGFLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD 60
Query: 61 RTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 120
RTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA
Sbjct: 61 RTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 120
Query: 121 SFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180
SFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK
Sbjct: 121 SFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180
Query: 181 NPNDNDHVEAIFMTLAHKLKSHKPLMLSQPPDNGIILKPEPKPAMTCWC 229
NPNDNDHVEAIFMTLAHKLKSHKPLMLSQPPDNGIILKPEPKPAMTCWC
Sbjct: 181 NPNDNDHVEAIFMTLAHKLKSHKPLMLSQPPDNGIILKPEPKPAMTCWC 229
>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
Length = 237
Score = 265 bits (677), Expect = 2e-71
Identities = 124/175 (70%), Positives = 150/175 (85%)
Query: 32 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAG 91
RIFKIIVIGDSNVGKTCLT+RFC G FPD+TEATIGVDFRE+ VEI+GE+IK+Q+WDTAG
Sbjct: 35 RIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAG 94
Query: 92 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCD 151
QERFRKSMV+HYYRNVHAVVFVYD+T M SF +L WI+EC H + +P++LVGNKCD
Sbjct: 95 QERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCD 154
Query: 152 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLM 206
LR IQVP++LA KFAD H+M LFETSAK+P ++ +VE+IFM LA +LK+ K L+
Sbjct: 155 LREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLL 209
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 156 bits (394), Expect = 2e-38
Identities = 81/169 (47%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FKI++IG++ VGKTCL RF G FP ATIGVDF + VEI+GE++K+Q+WDTAGQ
Sbjct: 9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 68
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR S+ Q YYR+ +A++ YD+T SF LP W+ E +Q+ +N + +LVGNK DL
Sbjct: 69 ERFR-SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDL 126
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 201
+V A++F++ M ETSAK ++D+VE +F+ LA +L S
Sbjct: 127 AERREVSQQRAEEFSEAQDMYYLETSAK---ESDNVEKLFLDLACRLIS 172
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 155 bits (392), Expect = 3e-38
Identities = 77/173 (44%), Positives = 116/173 (67%), Gaps = 5/173 (2%)
Query: 28 PARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLW 87
P +FK+++IGDS VGK+CL RF + + +TIGVDF+ R +E+DG+ IK+Q+W
Sbjct: 6 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
Query: 88 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVG 147
DTAGQERFR ++ YYR H ++ VYD+T+ SF+++ W++E ++ N + ++LVG
Sbjct: 66 DTAGQERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVG 123
Query: 148 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 200
NKCDL + V A++FAD+ +P ETSAKN +VE FMT+A ++K
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT---NVEQSFMTMAAEIK 173
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 150 bits (379), Expect = 9e-37
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 5/173 (2%)
Query: 28 PARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLW 87
P +FK+++IGDS VGK+CL RF + + +TIGVDF+ R +E+DG+ IK+Q+W
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 88 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVG 147
DTAGQERFR ++ YYR H ++ VYD+T+ S+ ++ W++E ++ N + ++LVG
Sbjct: 63 DTAGQERFR-TITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASEN-VNKLLVG 120
Query: 148 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 200
NK DL + V A++FAD+ +P ETSAKN +VE FMT+A ++K
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNAT---NVEQAFMTMAAEIK 170
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 149 bits (376), Expect = 2e-36
Identities = 78/192 (40%), Positives = 119/192 (61%), Gaps = 9/192 (4%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK+++IGDS VGKTC+ +RF F +TIG+DF+ R +E+DG+RIK+Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR ++ YYR ++ VYD+TN SF ++ +WI ++H A D+ ++++GNKCD+
Sbjct: 68 ERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEKMILGNKCDV 125
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLS---- 208
QV + +K A + + ETSAK N +VE F TLA +K+ L
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAK---ANINVENAFFTLARDIKAKMDKKLEGNSP 182
Query: 209 QPPDNGIILKPE 220
Q + G+ + P+
Sbjct: 183 QGSNQGVKITPD 194
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 148 bits (373), Expect = 4e-36
Identities = 80/191 (41%), Positives = 125/191 (65%), Gaps = 7/191 (3%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FKII+IGDSNVGKTC+ F +G + + + TIGVDF R+++IDG+++K+Q+WDTAGQ
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQ 76
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR ++ Q YYR+ HA + YD+T ++F S+P WI E +++ AN + +L+GNKCDL
Sbjct: 77 ERFR-TITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAAN-VVIMLIGNKCDL 134
Query: 153 RSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLML-SQP 210
V + A A+ + + + ETSAK ++ ++E +F+ +A +L + L L +
Sbjct: 135 WEKRHVLFEDACTLAEKYGLLAVLETSAK---ESKNIEEVFVLMAKELIARNSLHLYGES 191
Query: 211 PDNGIILKPEP 221
NG+ L P
Sbjct: 192 ALNGLPLDSSP 202
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 148 bits (373), Expect = 4e-36
Identities = 72/167 (43%), Positives = 111/167 (66%), Gaps = 5/167 (2%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK+++IGDS VGKTCL +RF F +TIG+DF+ R +E+DG++IK+Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR ++ YYR ++ VYD+TN SF ++ +WI ++H ++D+ R+++GNKCD+
Sbjct: 68 ERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEH-ASSDVERMILGNKCDM 125
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199
QV + +K A + + ETSAK+ + +VE F TLA +
Sbjct: 126 NDKRQVSKERGEKLAIDYGIKFLETSAKS---SANVEEAFFTLARDI 169
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 145 bits (365), Expect = 4e-35
Identities = 77/184 (41%), Positives = 121/184 (65%), Gaps = 8/184 (4%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK++++GD++VGKTC+ RF G F +R +TIGVDF + +EI G+R+K+Q+WDTAGQ
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 77
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR ++ Q YYR+ + + YD+T +SF S+P WIE+ +++ +N I ++L+GNK DL
Sbjct: 78 ERFR-TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN-IVQLLIGNKSDL 135
Query: 153 RSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKL--KSHKPLMLSQ 209
+V AQ A+ + + ETSAK D+ +VE F+ +A +L + PL +
Sbjct: 136 SELREVSLAEAQSLAEHYDILCAIETSAK---DSSNVEEAFLRVATELIMRHGGPLFSEK 192
Query: 210 PPDN 213
PD+
Sbjct: 193 SPDH 196
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 144 bits (363), Expect = 6e-35
Identities = 79/199 (39%), Positives = 122/199 (61%), Gaps = 10/199 (5%)
Query: 29 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWD 88
A +FK+++IGDS VGKTCL RF F + +TIG+DF+ R V+I+G++IK+Q+WD
Sbjct: 4 AYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWD 63
Query: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
TAGQERF K++ YYR ++ VYD+T+ SF ++ +W++ K++ A + R+L+GN
Sbjct: 64 TAGQERF-KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGN 121
Query: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLS 208
KCD+ + +V + A K A H + FETSAK+ + +V+ F +LA + L+ S
Sbjct: 122 KCDMEAKRKVQKEQADKLAREHGIRFFETSAKS---SMNVDEAFSSLARDI-----LLKS 173
Query: 209 QPPDNGIILKPEPKPAMTC 227
+G KP TC
Sbjct: 174 GGRRSGNGNKPPSTDLKTC 192
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 143 bits (360), Expect = 1e-34
Identities = 79/167 (47%), Positives = 107/167 (64%), Gaps = 5/167 (2%)
Query: 34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEID-GERIKIQLWDTAGQ 92
F++IVIGDS VGK+CL RF GRF ++ T+GVDF R VEI+ G+RIK+Q+WDTAGQ
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQ 68
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR S+ + YYRN + ++D+TN SF ++ W+EE K H+ I +LVG+KCDL
Sbjct: 69 ERFR-SITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL 127
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199
+ QV A+K A + M ETSA+ D +VE F L +
Sbjct: 128 DTQRQVTRHEAEKLAAAYGMKYIETSAR---DAINVEKAFTDLTRDI 171
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 141 bits (355), Expect = 5e-34
Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK+++IGDS VGKTC+ +RF F +TIG+DF+ + VE+ G++IK+Q+WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQ 68
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERF ++ YYR ++ VYD+TN SF ++ W+ +H D+ R+L+GNKCD+
Sbjct: 69 ERFH-TITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDM 126
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPL 205
VP + A H + FETSAK N ++E F+TLA + P+
Sbjct: 127 DDKRVVPKGKGGQIAREHGIRFFETSAK---ANINIEKAFLTLAEDILRKTPV 176
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 140 bits (352), Expect = 1e-33
Identities = 77/160 (48%), Positives = 104/160 (65%), Gaps = 6/160 (3%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK+++IGDS VGK+ L RF F TIGVDF+ R VEI+GE++K+Q+WDTAGQ
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 67
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ERFR ++ YYR H V+ VYD+T+ SF ++ W+ E Q+ +D+ RILVGNK D
Sbjct: 68 ERFR-TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDD 124
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 192
V T+ A KFA + LFETSAK +N +VE +F
Sbjct: 125 PERKVVETEDAYKFAGQMGIQLFETSAK---ENVNVEEMF 161
>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 139 bits (351), Expect = 2e-33
Identities = 81/171 (47%), Positives = 106/171 (61%), Gaps = 9/171 (5%)
Query: 34 FKIIVIGDSNVGKTCLTYRFCAGRFPD----RTEATIGVDFRERAVEID-GERIKIQLWD 88
F++IVIGDS VGK+CL +RF GRFP + T+GVDF R +EI+ G+RIK+QLWD
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWD 68
Query: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
TAGQERFR S+ + YYRN V+D+TN SF + W+EE K ++ I +LVG+
Sbjct: 69 TAGQERFR-SITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGH 127
Query: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199
KCDL S QV + A+K + M ETSAK D +VE F L +
Sbjct: 128 KCDLASQRQVTREEAEKLSADCGMKYIETSAK---DATNVEESFTILTRDI 175
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 138 bits (348), Expect = 3e-33
Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 29 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWD 88
A +FK+++IGDS VGKTCL RF F + +TIG+DF+ R V+I+G++IK+Q+WD
Sbjct: 128 AYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWD 187
Query: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
TAGQERF K++ YYR ++ YD+T+ SF ++ +W++ ++ A + +L+GN
Sbjct: 188 TAGQERF-KTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAG-VEHLLLGN 245
Query: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLS 208
KCD+ + +V + A K A H + FETSAK+ + +V+ F +LA + L+ S
Sbjct: 246 KCDMEAKRKVQKEQADKLAREHGIRFFETSAKS---SMNVDEAFSSLARDI-----LLKS 297
Query: 209 QPPDNGIILKPEPKPAMTC 227
+G KP TC
Sbjct: 298 GGRRSGNGNKPPSTDLKTC 316
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 138 bits (348), Expect = 3e-33
Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 29 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWD 88
A +FK+++IGDS VGKTCL RF F + +TIG+DF+ R V+I+G++IK+Q+WD
Sbjct: 128 AYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWD 187
Query: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
TAGQERF K++ YYR ++ YD+T+ SF ++ +W++ ++ A + +L+GN
Sbjct: 188 TAGQERF-KTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAG-VEHLLLGN 245
Query: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLS 208
KCD+ + +V + A K A H + FETSAK+ + +V+ F +LA + L+ S
Sbjct: 246 KCDMEAKRKVQKEQADKLAREHGIRFFETSAKS---SMNVDEAFSSLARDI-----LLKS 297
Query: 209 QPPDNGIILKPEPKPAMTC 227
+G KP TC
Sbjct: 298 GGRRSGNGNKPPSTDLKTC 316
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 138 bits (348), Expect = 3e-33
Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 29 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWD 88
A +FK+++IGDS VGKTCL RF F + +TIG+DF+ R V+I+G++IK+Q+WD
Sbjct: 128 AYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWD 187
Query: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
TAGQERF K++ YYR ++ YD+T+ SF ++ +W++ ++ A + +L+GN
Sbjct: 188 TAGQERF-KTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAG-VEHLLLGN 245
Query: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLS 208
KCD+ + +V + A K A H + FETSAK+ + +V+ F +LA + L+ S
Sbjct: 246 KCDMEAKRKVQKEQADKLAREHGIRFFETSAKS---SMNVDEAFSSLARDI-----LLKS 297
Query: 209 QPPDNGIILKPEPKPAMTC 227
+G KP TC
Sbjct: 298 GGRRSGNGNKPPSTDLKTC 316
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 138 bits (348), Expect = 3e-33
Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 16/206 (7%)
Query: 16 SGAVSGASGFLPPARSRI----------FKIIVIGDSNVGKTCLTYRFCAGRFPDRTE-A 64
SG + +G L P R + FK++++GDS VGKTCL RF G F T +
Sbjct: 36 SGPDAPPNGPLQPGRPSLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS 95
Query: 65 TIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 124
T+G+DFR + +++DG ++K+Q+WDTAGQERFR S+ YYR+ HA++ +YD+TN ASF +
Sbjct: 96 TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-SVTHAYYRDAHALLLLYDVTNKASFDN 154
Query: 125 LPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPND 184
+ +W+ E ++ +D+ +L+GNK D V + +K A + +P ETSAK
Sbjct: 155 IQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKT--- 210
Query: 185 NDHVEAIFMTLAHKLKSHKPLMLSQP 210
+V+ F +A +LK S+P
Sbjct: 211 GLNVDLAFTAIAKELKQRSMKAPSEP 236
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 134 bits (338), Expect = 5e-32
Identities = 78/190 (41%), Positives = 112/190 (58%), Gaps = 7/190 (3%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK I+IGD+ VGK+CL +F RF + TIGV+F R V IDG++IK+Q+WDTAGQ
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 65
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
E FR S+ + YYR + VYD+T +F+ L SW+E+ +QH +N + +L+GNK DL
Sbjct: 66 ESFR-SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDL 123
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL--KSHKPLMLSQP 210
S V + + FA H + ETSAK +VE F+ A ++ K + L
Sbjct: 124 ESRRDVKREEGEAFAREHGLIFMETSAKTA---CNVEEAFINTAKEIYRKIQQGLFDVHN 180
Query: 211 PDNGIILKPE 220
NGI + P+
Sbjct: 181 EANGIKIGPQ 190
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 133 bits (335), Expect = 1e-31
Identities = 76/194 (39%), Positives = 116/194 (59%), Gaps = 7/194 (3%)
Query: 29 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWD 88
A + +FK I+IGD+ VGK+CL +F RF + TIGV+F R + IDG++IK+Q+WD
Sbjct: 2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61
Query: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
TAGQE FR S+ + YYR + VYD+T +F+ L +W+E+ +QH +N + +L+GN
Sbjct: 62 TAGQESFR-SITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMV-IMLIGN 119
Query: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL--KSHKPLM 206
K DL S +V + + FA H + ETSAK + +VE F+ A ++ K + +
Sbjct: 120 KSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS---NVEEAFINTAKEIYEKIQEGVF 176
Query: 207 LSQPPDNGIILKPE 220
NGI + P+
Sbjct: 177 DINNEANGIKIGPQ 190
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 132 bits (333), Expect = 2e-31
Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 17/207 (8%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK+++IGDS VGK+ L RF F +++TIGV+F R++++DG+ IK Q+WDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ER+R ++ YYR + VYD+ ++ ++ W++E + H +N I +LVGNK DL
Sbjct: 71 ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN-IVIMLVGNKSDL 128
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL---AHKLKSHKPLM--- 206
R VPTD A+ FA+ + + ETSA D+ +VEA F T+ +++ S K +
Sbjct: 129 RHLRAVPTDEARAFAEKNGLSFIETSAL---DSTNVEAAFQTILTEIYRIVSQKQMSDRR 185
Query: 207 -LSQPPDNGII---LKP--EPKPAMTC 227
P N ++ + P E KP + C
Sbjct: 186 ENDMSPSNNVVPIHVPPTTENKPKVQC 212
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 131 bits (329), Expect = 5e-31
Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 13/192 (6%)
Query: 17 GAVSGASGFLP-------PARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE-ATIGV 68
GAV+ G P P+ K++++GD+ VGKTC +F G F T AT+G+
Sbjct: 6 GAVATRDGEAPERSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGI 65
Query: 69 DFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSW 128
DFR + V +DG R+K+Q+WDTAGQERFR S+ YYR+ A++ +YD+TN +SF ++ +W
Sbjct: 66 DFRNKVVTVDGVRVKLQIWDTAGQERFR-SVTHAYYRDAQALLLLYDITNKSSFDNIRAW 124
Query: 129 IEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 188
+ E ++ D+ +L+GNK D+ S + ++ + A + +P ETSAK +V
Sbjct: 125 LTEIHEY-AQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKT---GMNV 180
Query: 189 EAIFMTLAHKLK 200
E F+ +A +LK
Sbjct: 181 ELAFLAIAKELK 192
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 129 bits (325), Expect = 2e-30
Identities = 66/173 (38%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQ 92
+FK+++IGDS VGK+ L RF F +++TIGV+F R++++DG+ IK Q+WDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 93 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDL 152
ER+R ++ YYR + VYD+ ++ ++ W++E + H +N I +LVGNK DL
Sbjct: 71 ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN-IVIMLVGNKSDL 128
Query: 153 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPL 205
R VPTD A+ FA+ +++ ETSA + + + +T +++ S K +
Sbjct: 129 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181
>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
Length = 206
Score = 129 bits (323), Expect = 3e-30
Identities = 73/183 (39%), Positives = 102/183 (55%), Gaps = 5/183 (2%)
Query: 35 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQER 94
KI++IG+S VGK+ L RF F ATIGVDF+ + + +DG + K+ +WDTAGQER
Sbjct: 10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69
Query: 95 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLRS 154
FR ++ YYR V+ VYD+T +F L +W+ E + + NDI +LVGNK D +
Sbjct: 70 FR-TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 128
Query: 155 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPPDNG 214
+V + KFA HSM E SAK D V+ F L K+ L S+ + G
Sbjct: 129 R-EVDRNEGLKFARKHSMLFIEASAKT---CDGVQCAFEELVEKIIQTPGLWESENQNKG 184
Query: 215 IIL 217
+ L
Sbjct: 185 VKL 187
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 128 bits (321), Expect = 5e-30
Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 6/169 (3%)
Query: 33 IFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVEIDGERIKIQLWDTAG 91
+ K I++GDS VGKT L +F G+F P AT+G+ F + V +DG R+K+Q+WDTAG
Sbjct: 22 LHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRVKLQIWDTAG 81
Query: 92 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCD 151
QERFR S+ YYR+ A++ +YD+TN +SF ++ +W+ E ++ D+ +L+GNK D
Sbjct: 82 QERFR-SVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEY-AQRDVVIMLLGNKAD 139
Query: 152 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 200
+ S + ++ + A + +P ETSAK +VE F+ +A +LK
Sbjct: 140 MSSERVIRSEDGETLAREYGVPFLETSAKT---GMNVELAFLAIAKELK 185
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 127 bits (318), Expect = 1e-29
Identities = 67/169 (39%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Query: 31 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTA 90
S IFK I+IGD VGK+CL ++F +F TIGV+F R +E+ G++IK+Q+WDTA
Sbjct: 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 68
Query: 91 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKC 150
GQERFR ++ + YYR + VYD+T ++++ L SW+ + + N + IL+GNK
Sbjct: 69 GQERFR-AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKA 126
Query: 151 DLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199
DL + V + A++FA+ + + E SAK ++VE F+ A K+
Sbjct: 127 DLEAQRDVTYEEAKQFAEENGLLFLEASAKT---GENVEDAFLEAAKKI 172
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 126 bits (317), Expect = 1e-29
Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 12/216 (5%)
Query: 14 SSSGAVSGASGFL--PPARSRIFK--IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD 69
+ S A+SG G P R FK +I+IG VGKT L RF F + ++T+GVD
Sbjct: 19 AGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVD 78
Query: 70 FRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWI 129
F+ + VE+ G++I++Q+WDTAGQERF S+ YYR+ ++ VYD+T +F LP W+
Sbjct: 79 FKIKTVELRGKKIRLQIWDTAGQERFN-SITSAYYRSAKGIILVYDITKKETFDDLPKWM 137
Query: 130 EECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHV 188
+ ++ + D +LVGNK D + ++ +KFA + M E SAK DN +V
Sbjct: 138 KMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK---DNFNV 193
Query: 189 EAIFMTLAHKLKSHKPL-MLSQPPDNGII-LKPEPK 222
+ IF+ L + PL +L N I+ L+PEP+
Sbjct: 194 DEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPE 229
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 125 bits (315), Expect = 2e-29
Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Query: 27 PPARSRI--FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKI 84
P A ++I FK++++G+S VGK+ L RF G+F + E+TIG F + V +D +K
Sbjct: 13 PAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKF 72
Query: 85 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRI 144
++WDTAGQER+ S+ YYR A + VYD+TN +F +W++E ++ N I
Sbjct: 73 EIWDTAGQERYH-SLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IVIA 130
Query: 145 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKP 204
L GNK DL S V AQ +AD +S+ ETSAK +V IFM +A KL ++P
Sbjct: 131 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAM---NVNEIFMAIAKKLPKNEP 187
Query: 205 LMLSQPP--DNGIILKPEPKPAMTCWC 229
+ P + G+ L+ E PA C
Sbjct: 188 QNATGAPGRNRGVDLQ-ENNPASRSQC 213
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 125 bits (315), Expect = 2e-29
Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Query: 27 PPARSRI--FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKI 84
P A ++I FK++++G+S VGK+ L RF G+F + E+TIG F + V +D +K
Sbjct: 13 PAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKF 72
Query: 85 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRI 144
++WDTAGQER+ S+ YYR A + VYD+TN +F +W++E ++ N I
Sbjct: 73 EIWDTAGQERYH-SLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IVIA 130
Query: 145 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKP 204
L GNK DL S V AQ +AD +S+ ETSAK +V IFM +A KL ++P
Sbjct: 131 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAM---NVNEIFMAIAKKLPKNEP 187
Query: 205 LMLSQPP--DNGIILKPEPKPAMTCWC 229
+ P + G+ L+ E PA C
Sbjct: 188 QNATGAPGRNRGVDLQ-ENNPASRSQC 213
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 122 bits (307), Expect = 2e-28
Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Query: 34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQE 93
FK++++G+S VGK+ L RF G+F + E+TIG F + V +D +K ++WDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 94 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLR 153
R+ S+ YYR A + VYD+TN SF +W++E ++ N I L GNK DL
Sbjct: 81 RYH-SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKADLA 138
Query: 154 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKP 204
+ V AQ +AD +S+ ETSAK + +V IFM +A KL ++P
Sbjct: 139 NKRAVDFQEAQSYADDNSLLFMETSAKT---SMNVNEIFMAIAKKLPKNEP 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,666,199
Number of Sequences: 37866
Number of extensions: 347853
Number of successful extensions: 1361
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 258
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.