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Search of human proteins with 6912442
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912442 potassium voltage-gated channel, Isk-related family,
member 1-like [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912442 potassium voltage-gated channel, Isk-related family, ... 283 4e-77
gi|4885443 potassium voltage-gated channel, Isk-related family, ... 46 9e-06
gi|189095241 potassium voltage-gated channel, Isk-related family... 33 0.10
gi|189095239 potassium voltage-gated channel, Isk-related family... 33 0.10
gi|189095237 potassium voltage-gated channel, Isk-related family... 33 0.10
gi|60218915 potassium voltage-gated channel, Isk-related family,... 33 0.10
gi|154448884 potassium voltage-gated channel, Isk-related family... 31 0.30
gi|224809302 xeroderma pigmentosum, complementation group C isof... 30 0.88
gi|224809295 xeroderma pigmentosum, complementation group C isof... 30 0.88
gi|5453613 CD7 antigen precursor [Homo sapiens] 28 2.0
gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens] 28 2.0
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 28 3.3
gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Hom... 27 4.4
gi|197333692 leucine rich repeat containing 8 family, member B [... 27 4.4
gi|21245134 leucine rich repeat containing 8 family, member B [H... 27 4.4
gi|171543850 RUN domain containing 1 [Homo sapiens] 27 4.4
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 27 5.7
gi|28416937 purinergic receptor P2X5 isoform C [Homo sapiens] 27 5.7
gi|28416933 purinergic receptor P2X5 isoform A [Homo sapiens] 27 5.7
gi|38569457 solute carrier family 12, member 8 [Homo sapiens] 27 5.7
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 27 5.7
gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens] 27 7.4
gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens] 27 7.4
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 27 7.4
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 27 7.4
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens] 27 7.4
gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens] 26 9.7
>gi|6912442 potassium voltage-gated channel, Isk-related family,
member 1-like [Homo sapiens]
Length = 142
Score = 283 bits (723), Expect = 4e-77
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY 60
MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY
Sbjct: 1 MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY 60
Query: 61 LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ 120
LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ
Sbjct: 61 LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ 120
Query: 121 AEGRRQLASEGLPALAQGAERV 142
AEGRRQLASEGLPALAQGAERV
Sbjct: 121 AEGRRQLASEGLPALAQGAERV 142
>gi|4885443 potassium voltage-gated channel, Isk-related family,
member 3 [Homo sapiens]
Length = 103
Score = 46.2 bits (108), Expect = 9e-06
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 34 RPSMGMGVVPDPFVGREVTSAKGDDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKD 92
RP G+G R + D++Y+YIL +M +A G LIL YTRSRK+ + D
Sbjct: 32 RPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD 90
>gi|189095241 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 32.7 bits (73), Expect = 0.10
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 49 REVTSAKGDDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKD 92
R S+ G LY+L+++ F+ G++L+Y RS+KL + D
Sbjct: 33 RSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSND 76
>gi|189095239 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 32.7 bits (73), Expect = 0.10
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 49 REVTSAKGDDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKD 92
R S+ G LY+L+++ F+ G++L+Y RS+KL + D
Sbjct: 33 RSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSND 76
>gi|189095237 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 32.7 bits (73), Expect = 0.10
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 49 REVTSAKGDDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKD 92
R S+ G LY+L+++ F+ G++L+Y RS+KL + D
Sbjct: 33 RSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSND 76
>gi|60218915 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 32.7 bits (73), Expect = 0.10
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 49 REVTSAKGDDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKD 92
R S+ G LY+L+++ F+ G++L+Y RS+KL + D
Sbjct: 33 RSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSND 76
>gi|154448884 potassium voltage-gated channel, Isk-related family,
member 4 [Homo sapiens]
Length = 170
Score = 31.2 bits (69), Expect = 0.30
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 38 GMGVVPDPFVGREVTSAKGD-DAYLYILLIMIFYACLAGGLILAYTRSRK 86
G P R G+ + Y YIL++M FY G++L Y +S++
Sbjct: 13 GTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKSKR 62
>gi|224809302 xeroderma pigmentosum, complementation group C isoform
2 [Homo sapiens]
Length = 903
Score = 29.6 bits (65), Expect = 0.88
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 73 LAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQAEGRRQLAS 129
LA GL++ R+ S+A A H A GG L++D E SQAE R LA+
Sbjct: 814 LAKGLLIRERLKRRY----GPKSEAAAPHTDA-GGGLSSDEEEGTSSQAEAARILAA 865
>gi|224809295 xeroderma pigmentosum, complementation group C isoform
1 [Homo sapiens]
Length = 940
Score = 29.6 bits (65), Expect = 0.88
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 73 LAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQAEGRRQLAS 129
LA GL++ R+ S+A A H A GG L++D E SQAE R LA+
Sbjct: 851 LAKGLLIRERLKRRY----GPKSEAAAPHTDA-GGGLSSDEEEGTSSQAEAARILAA 902
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 2.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 33 PRPSMGMGVVPDPFVGREVTSAKGDDAYLYILLIMIFYACLAGGL--ILAYTRSRKLVEA 90
P P G +PDP + A L ++ F L G+ +LA T+ +KL
Sbjct: 153 PAPPTG-SALPDPQTASALPDPPAASALPAALAVISFLLGLGLGVACVLARTQIKKLCSW 211
Query: 91 KDEPSQACAEHE 102
+D+ S AC +E
Sbjct: 212 RDKNSAACVVYE 223
>gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens]
Length = 182
Score = 28.5 bits (62), Expect = 2.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 93 EPSQACA------EHEWAPGGALTADAEAAAGSQAEGRRQLASE 130
EPSQA A E A GGA D ++AAG Q+A E
Sbjct: 11 EPSQAAAAAEAAAEEVMAEGGAQGGDCDSAAGDPDSAAGQMAEE 54
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 27.7 bits (60), Expect = 3.3
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 94 PSQACAEHEWAPGGALTADAEAAAGSQAEGRRQLASEGLPALAQGA 139
P QACA PG +L A ++A G + A GLP Q A
Sbjct: 111 PDQACASSRADPGASLAAASQAVCG-------RSAGHGLPPGVQEA 149
>gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Homo
sapiens]
Length = 501
Score = 27.3 bits (59), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 94 PSQACAEHEWAPGGALTADAEAAAGSQA 121
P QACA PG +L A ++A G A
Sbjct: 301 PDQACASSRADPGASLAAASQAVCGRSA 328
>gi|197333692 leucine rich repeat containing 8 family, member B
[Homo sapiens]
Length = 803
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 57 DDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACA 99
D + YI LIM+ A LAG L L +R + K E CA
Sbjct: 25 DVFWYYITLIMLLVAVLAGALQLTQSRVLCCLPCKVEFDNHCA 67
>gi|21245134 leucine rich repeat containing 8 family, member B
[Homo sapiens]
Length = 803
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 57 DDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACA 99
D + YI LIM+ A LAG L L +R + K E CA
Sbjct: 25 DVFWYYITLIMLLVAVLAGALQLTQSRVLCCLPCKVEFDNHCA 67
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 27.3 bits (59), Expect = 4.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 89 EAKDEPSQACAEHEWAPGGALTADAEAAAGSQAEGRRQLASEGLPALAQGA 139
E ++EP C WAP GA+ AEA G+ A A E P A G+
Sbjct: 26 EEEEEPLPPCEAVRWAPVGAV---AEARPGATAFLEEATAEE--PGAAPGS 71
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 26.9 bits (58), Expect = 5.7
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 104 APGGALTADAEAAAGSQAEGRRQLA--SEGLPALAQGAER 141
APG A A A AAA + A G A G A A GAER
Sbjct: 37 APGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAER 76
>gi|28416937 purinergic receptor P2X5 isoform C [Homo sapiens]
Length = 178
Score = 26.9 bits (58), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 87 LVEAKDEPSQACAEHEWAPGGALTADAEAAAG 118
L+ ++ CAE+E P GA + D++ AG
Sbjct: 107 LIVTPNQRQNVCAENEGIPDGACSKDSDCHAG 138
>gi|28416933 purinergic receptor P2X5 isoform A [Homo sapiens]
Length = 422
Score = 26.9 bits (58), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 87 LVEAKDEPSQACAEHEWAPGGALTADAEAAAG 118
L+ ++ CAE+E P GA + D++ AG
Sbjct: 107 LIVTPNQRQNVCAENEGIPDGACSKDSDCHAG 138
>gi|38569457 solute carrier family 12, member 8 [Homo sapiens]
Length = 714
Score = 26.9 bits (58), Expect = 5.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 27 SGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAYLYILLIMIFYACLAGGLIL 79
SG+G G R S+G G V ++S G I L+ +F C+AG + +
Sbjct: 91 SGIGVGERSSIGSGGVYS-----MISSVLGGQTGGTIGLLYVFGQCVAGAMYI 138
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 26.9 bits (58), Expect = 5.7
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 69 FYACLAGGLILAYTRSRKL---VEAKDEPSQACAEHEWAP----GGALTADAEAAAGSQA 121
F + LA G+ L T L A + +A A ++AP GG AEA
Sbjct: 90 FCSSLAQGMALTSTLMATLPGGFSASPQHQEAAAARKFAPQPLPGGGNFDKAEALQADAE 149
Query: 122 EGRRQLASEGLPALAQGAERV 142
+G+ LA EG AE V
Sbjct: 150 DGKGFLAKEGSLLAFSAAETV 170
>gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 105 PGGALTADAEAAAGSQAEGRRQLASEGLPALAQGA 139
PGG L +A AAA Q +R+ L LA A
Sbjct: 470 PGGLLAREAHAAAPVQTRSQRRRRGPSLARLADSA 504
>gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 105 PGGALTADAEAAAGSQAEGRRQLASEGLPALAQGA 139
PGG L +A AAA Q +R+ L LA A
Sbjct: 470 PGGLLAREAHAAAPVQTRSQRRRRGPSLARLADSA 504
>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
2 [Homo sapiens]
Length = 530
Score = 26.6 bits (57), Expect = 7.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 14 SRLLLELHHRGNASGLGAGPRPSMGM-GVVPDPFVGREVTSAKGDDAYL 61
+RL L +R A+ +GA P + GM GV P G T GD L
Sbjct: 118 ARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAPPGNGTRGTGGVGDKRQL 166
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 26.6 bits (57), Expect = 7.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 93 EPSQACAEHEWAPGGALTADAEAAAGSQAEGRRQLASEGLPALAQG 138
E +A E + P G T +AE A ++EG Q +G P ++ G
Sbjct: 2213 EAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLG 2258
>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
Length = 1104
Score = 26.6 bits (57), Expect = 7.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 24 GNASGLGAGPRPSMGMGVVP 43
G SG G+GP PS G G P
Sbjct: 263 GPGSGSGSGPGPSSGPGAAP 282
>gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens]
Length = 653
Score = 26.2 bits (56), Expect = 9.7
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 63 ILLIMIFYACLAGGLILAYTRSRKLVEA----KDEPSQACAEHEWAPGGALTADAEAAAG 118
+LL+ + L G I S KL+ Q A+H+ PG A A
Sbjct: 44 LLLVFSAFITLCFGAIFFLPDSSKLLSGVLFHSSPALQPAADHKPGPG--------ARAE 95
Query: 119 SQAEGRRQLASEGLPALAQGA 139
AEGR + EG P + A
Sbjct: 96 DAAEGRARRREEGAPGDPEAA 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,684,680
Number of Sequences: 37866
Number of extensions: 251799
Number of successful extensions: 955
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 33
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.