Search of human proteins with 6912268

Search of human proteins with 6912268

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912268 binder of Arl Two [Homo sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912268 binder of Arl Two [Homo sapiens]                           323   3e-89
gi|169206127 PREDICTED: similar to hCG1780976 [Homo sapiens]          227   4e-60
gi|169206470 PREDICTED: similar to hCG1780976 [Homo sapiens]          227   4e-60
gi|169205924 PREDICTED: similar to hCG1780976 [Homo sapiens]          227   4e-60
gi|156564240 coiled-coil domain containing 104 [Homo sapiens]          44   8e-05
gi|4557841 recombination activating gene 1 [Homo sapiens]              29   1.6  
gi|51173720 bromodomain and PHD finger-containing protein 1 isof...    28   2.7  
gi|88703051 adaptor-related protein complex 1, sigma 3 subunit [...    28   4.6  
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo...    27   6.0  
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso...    27   7.8  
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso...    27   7.8  
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...    27   7.8  
gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...    27   7.8  
gi|228480280 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...    27   7.8  
gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog...    27   7.8  
gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapi...    27   7.8  
gi|148277106 hypothetical protein LOC442213 [Homo sapiens]             27   7.8  

>gi|6912268 binder of Arl Two [Homo sapiens]
          Length = 163

 Score =  323 bits (829), Expect = 3e-89
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL 60
           MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL
Sbjct: 1   MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL 60

Query: 61  IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA 120
           IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA
Sbjct: 61  IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA 120

Query: 121 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH 163
           FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
Sbjct: 121 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH 163


>gi|169206127 PREDICTED: similar to hCG1780976 [Homo sapiens]
          Length = 172

 Score =  227 bits (578), Expect = 4e-60
 Identities = 124/173 (71%), Positives = 135/173 (78%), Gaps = 13/173 (7%)

Query: 1   MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL 60
           M ALE E F + FSS SDA FDA VGYLEDIIMD++FQLLQRNF++ YY EFEDT+ENKL
Sbjct: 1   MGALE-EGFIVPFSSDSDAHFDAAVGYLEDIIMDEDFQLLQRNFINNYYQEFEDTKENKL 59

Query: 61  IYTPIFNEYISLV-----------EKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIF 109
            YTPIFNEYISL             KYIEEQLL++I  F MA F TTLQHHKDEV GDI 
Sbjct: 60  TYTPIFNEYISLAGKYIEEQYIEERKYIEEQLLEQILGFTMATF-TTLQHHKDEVVGDIL 118

Query: 110 DMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLR 162
            MLL FTDFLAFKEMFLD RAEKEG+ LDLS GLV TSLCKSSS+ ASQNNL+
Sbjct: 119 QMLLKFTDFLAFKEMFLDCRAEKEGQRLDLSRGLVETSLCKSSSMTASQNNLQ 171


>gi|169206470 PREDICTED: similar to hCG1780976 [Homo sapiens]
          Length = 172

 Score =  227 bits (578), Expect = 4e-60
 Identities = 124/173 (71%), Positives = 135/173 (78%), Gaps = 13/173 (7%)

Query: 1   MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL 60
           M ALE E F + FSS SDA FDA VGYLEDIIMD++FQLLQRNF++ YY EFEDT+ENKL
Sbjct: 1   MGALE-EGFIVPFSSDSDAHFDAAVGYLEDIIMDEDFQLLQRNFINNYYQEFEDTKENKL 59

Query: 61  IYTPIFNEYISLV-----------EKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIF 109
            YTPIFNEYISL             KYIEEQLL++I  F MA F TTLQHHKDEV GDI 
Sbjct: 60  TYTPIFNEYISLAGKYIEEQYIEERKYIEEQLLEQILGFTMATF-TTLQHHKDEVVGDIL 118

Query: 110 DMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLR 162
            MLL FTDFLAFKEMFLD RAEKEG+ LDLS GLV TSLCKSSS+ ASQNNL+
Sbjct: 119 QMLLKFTDFLAFKEMFLDCRAEKEGQRLDLSRGLVETSLCKSSSMTASQNNLQ 171


>gi|169205924 PREDICTED: similar to hCG1780976 [Homo sapiens]
          Length = 172

 Score =  227 bits (578), Expect = 4e-60
 Identities = 124/173 (71%), Positives = 135/173 (78%), Gaps = 13/173 (7%)

Query: 1   MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL 60
           M ALE E F + FSS SDA FDA VGYLEDIIMD++FQLLQRNF++ YY EFEDT+ENKL
Sbjct: 1   MGALE-EGFIVPFSSDSDAHFDAAVGYLEDIIMDEDFQLLQRNFINNYYQEFEDTKENKL 59

Query: 61  IYTPIFNEYISLV-----------EKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIF 109
            YTPIFNEYISL             KYIEEQLL++I  F MA F TTLQHHKDEV GDI 
Sbjct: 60  TYTPIFNEYISLAGKYIEEQYIEERKYIEEQLLEQILGFTMATF-TTLQHHKDEVVGDIL 118

Query: 110 DMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLR 162
            MLL FTDFLAFKEMFLD RAEKEG+ LDLS GLV TSLCKSSS+ ASQNNL+
Sbjct: 119 QMLLKFTDFLAFKEMFLDCRAEKEGQRLDLSRGLVETSLCKSSSMTASQNNLQ 171


>gi|156564240 coiled-coil domain containing 104 [Homo sapiens]
          Length = 342

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 14  SSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPIFNEYISLV 73
           ++  + E + VV  +   +   ++ +   +F+++    F+D EE+KL YT I  EY  LV
Sbjct: 2   AAEEEDEVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELV 61

Query: 74  EKYIEEQLLQ---RIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRA 130
           EK +E  L +      +F  A  +   + H  +    I   +L   DF  FK M +    
Sbjct: 62  EKLLEGYLKEIGINEDQFQEACTSPLAKTHTSQA---ILQPVLAAEDFTIFKAMMVQKNI 118

Query: 131 EKE 133
           E +
Sbjct: 119 EMQ 121


>gi|4557841 recombination activating gene 1 [Homo sapiens]
          Length = 1043

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 121 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH 163
           F+    D +  +E  GL+ S  + + +LC ++ L ASQN + H
Sbjct: 705 FRGTGYDEKLVREVEGLEASGSVYICTLCDATRLEASQNLVFH 747


>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
           1 [Homo sapiens]
          Length = 1220

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 6   GESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPI 65
           G  F+     +   E D V  YL+ I    +F  +++N     YL F+D EE+       
Sbjct: 650 GNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEED------- 702

Query: 66  FNEYISLVEKY 76
           FN  +S   KY
Sbjct: 703 FNLIVSNCLKY 713


>gi|88703051 adaptor-related protein complex 1, sigma 3 subunit
          [Homo sapiens]
          Length = 154

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 36 EFQLLQRNFMDKYYLEFEDTEENKLIYTPIFNEYISLVEKY 76
          E +L+ + +   Y+    + ++N+L+   I + Y+ L++KY
Sbjct: 54 ELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKY 94


>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
            sapiens]
          Length = 2517

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 36   EFQLLQRNFMDKYYLEFEDTEENKL 60
            +F L Q   +DK +LE ED EE +L
Sbjct: 1646 QFHLFQLQRLDKLFLEQEDEEEKRL 1670


>gi|12083581 phosphoinositide-specific phospholipase C beta 1
           isoform a [Homo sapiens]
          Length = 1216

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  MDKYYLEFEDTEENKLIYTPIFNEYIS-LVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDE 103
           MD   L+  D   N+++Y P+  E +  L+EKY     L R  + ++  F   L   ++ 
Sbjct: 246 MDFINLKQRDPRLNEILYPPLKQEQVQVLIEKYEPNNSLARKGQISVDGFMRYLSGEENG 305

Query: 104 V 104
           V
Sbjct: 306 V 306


>gi|33356544 phosphoinositide-specific phospholipase C beta 1
           isoform b [Homo sapiens]
          Length = 1173

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  MDKYYLEFEDTEENKLIYTPIFNEYIS-LVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDE 103
           MD   L+  D   N+++Y P+  E +  L+EKY     L R  + ++  F   L   ++ 
Sbjct: 246 MDFINLKQRDPRLNEILYPPLKQEQVQVLIEKYEPNNSLARKGQISVDGFMRYLSGEENG 305

Query: 104 V 104
           V
Sbjct: 306 V 306


>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
           synthase isoform 3 [Homo sapiens]
          Length = 500

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 56  EENKLIYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLT 114
           +E K +++ + N+   L E Y E  L       ++A    TL  H+D+    +  ML T
Sbjct: 338 KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFT 396


>gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
           synthase isoform 2 [Homo sapiens]
          Length = 422

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 56  EENKLIYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLT 114
           +E K +++ + N+   L E Y E  L       ++A    TL  H+D+    +  ML T
Sbjct: 260 KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFT 318


>gi|228480280 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
           synthase isoform 1 [Homo sapiens]
          Length = 501

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 56  EENKLIYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLT 114
           +E K +++ + N+   L E Y E  L       ++A    TL  H+D+    +  ML T
Sbjct: 339 KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFT 397


>gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog C
           [Homo sapiens]
          Length = 766

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 64  PIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKE 123
           P+  E I L+ ++ E Q L++  E N  A   + Q  KD  + ++   L   +  L  K 
Sbjct: 411 PVAEEEI-LLREFEERQSLRKRSELNQDAEPASSQETKDSSSQEVLSELRALSQKLKEKH 469

Query: 124 MFLDYRAEKEG 134
                +A  EG
Sbjct: 470 QSRKQKASSEG 480


>gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo
           sapiens]
          Length = 427

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 30  DIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPI----FNEYISLVE 74
           ++ +DDE +L     + +YY++ +D+E+N+ ++  +    FN+ I  V+
Sbjct: 247 EVFVDDETKLTLHG-LQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVK 294


>gi|148277106 hypothetical protein LOC442213 [Homo sapiens]
          Length = 829

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 48  YYLEFEDTEENKLIYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEV 104
           YYL+   +    LI     NE+  L+ K  EE   Q +  +++A+F+     HK  +
Sbjct: 160 YYLQTYGSATQDLIGEKWENEFCKLIRKLQEEH--QELQLYSLASFSLWRDFHKTSI 214


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,304,339
Number of Sequences: 37866
Number of extensions: 206967
Number of successful extensions: 559
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 17
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.