Search of human proteins with 66528677

Search of human proteins with 66528677

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66528677 nuclear receptor subfamily 3, group C, member 1
isoform gamma [Homo sapiens]
         (778 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|66528677 nuclear receptor subfamily 3, group C, member 1 isof...  1566   0.0  
gi|66528611 nuclear receptor subfamily 3, group C, member 1 isof...  1560   0.0  
gi|66528586 nuclear receptor subfamily 3, group C, member 1 isof...  1560   0.0  
gi|66528563 nuclear receptor subfamily 3, group C, member 1 isof...  1560   0.0  
gi|66528530 nuclear receptor subfamily 3, group C, member 1 isof...  1560   0.0  
gi|4504133 nuclear receptor subfamily 3, group C, member 1 isofo...  1560   0.0  
gi|66528642 nuclear receptor subfamily 3, group C, member 1 isof...  1460   0.0  
gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Ho...   466   e-131
gi|110611914 progesterone receptor [Homo sapiens]                     425   e-119
gi|58535455 androgen receptor isoform 2 [Homo sapiens]                389   e-108
gi|21322252 androgen receptor isoform 1 [Homo sapiens]                389   e-108
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi...   176   1e-43
gi|45545427 estrogen-related receptor gamma isoform 2 [Homo sapi...   176   1e-43
gi|45545433 estrogen-related receptor gamma isoform 1 [Homo sapi...   176   1e-43
gi|197209821 estrogen-related receptor gamma isoform 2 [Homo sap...   176   1e-43
gi|238550159 estrogen-related receptor beta [Homo sapiens]            168   2e-41
gi|18860920 estrogen-related receptor alpha [Homo sapiens]            163   6e-40
gi|170295804 estrogen receptor alpha isoform 4 [Homo sapiens]         160   4e-39
gi|170295802 estrogen receptor alpha isoform 3 [Homo sapiens]         160   4e-39
gi|170295800 estrogen receptor alpha isoform 2 [Homo sapiens]         160   4e-39
gi|62821794 estrogen receptor alpha isoform 1 [Homo sapiens]          160   4e-39
gi|94538328 estrogen receptor beta isoform 2 [Homo sapiens]           156   8e-38
gi|94538325 estrogen receptor beta isoform 2 [Homo sapiens]           156   8e-38
gi|10835013 estrogen receptor beta isoform 1 [Homo sapiens]           155   1e-37
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo...   117   4e-26
gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Hom...   117   4e-26
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom...   114   3e-25
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom...   114   3e-25
gi|4506755 retinoid X receptor, alpha [Homo sapiens]                  113   6e-25
gi|11415052 retinoid X receptor, beta [Homo sapiens]                  112   1e-24

>gi|66528677 nuclear receptor subfamily 3, group C, member 1 isoform
           gamma [Homo sapiens]
          Length = 778

 Score = 1566 bits (4055), Expect = 0.0
 Identities = 778/778 (100%), Positives = 778/778 (100%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720

Query: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
Sbjct: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778


>gi|66528611 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 1560 bits (4038), Expect = 0.0
 Identities = 777/778 (99%), Positives = 777/778 (99%), Gaps = 1/778 (0%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG QHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG-QHNYLCAGRNDCIIDKIRRKNCPACRYR 479

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 480 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 539

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 540 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 599

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 600 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 659

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 660 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 719

Query: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
Sbjct: 720 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 777


>gi|66528586 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 1560 bits (4038), Expect = 0.0
 Identities = 777/778 (99%), Positives = 777/778 (99%), Gaps = 1/778 (0%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG QHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG-QHNYLCAGRNDCIIDKIRRKNCPACRYR 479

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 480 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 539

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 540 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 599

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 600 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 659

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 660 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 719

Query: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
Sbjct: 720 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 777


>gi|66528563 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 1560 bits (4038), Expect = 0.0
 Identities = 777/778 (99%), Positives = 777/778 (99%), Gaps = 1/778 (0%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG QHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG-QHNYLCAGRNDCIIDKIRRKNCPACRYR 479

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 480 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 539

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 540 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 599

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 600 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 659

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 660 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 719

Query: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
Sbjct: 720 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 777


>gi|66528530 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 1560 bits (4038), Expect = 0.0
 Identities = 777/778 (99%), Positives = 777/778 (99%), Gaps = 1/778 (0%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG QHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG-QHNYLCAGRNDCIIDKIRRKNCPACRYR 479

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 480 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 539

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 540 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 599

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 600 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 659

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 660 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 719

Query: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
Sbjct: 720 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 777


>gi|4504133 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 1560 bits (4038), Expect = 0.0
 Identities = 777/778 (99%), Positives = 777/778 (99%), Gaps = 1/778 (0%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG QHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG-QHNYLCAGRNDCIIDKIRRKNCPACRYR 479

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 480 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 539

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 540 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 599

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 600 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 659

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 660 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 719

Query: 721 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
Sbjct: 720 KLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 777


>gi|66528642 nuclear receptor subfamily 3, group C, member 1 isoform
           beta [Homo sapiens]
          Length = 742

 Score = 1460 bits (3779), Expect = 0.0
 Identities = 728/730 (99%), Positives = 728/730 (99%), Gaps = 1/730 (0%)

Query: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60
           MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR
Sbjct: 1   MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRR 60

Query: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120
           LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK
Sbjct: 61  LLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLK 120

Query: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180
           LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN
Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGN 180

Query: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240
           VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN
Sbjct: 181 VKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGN 240

Query: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300
           SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV
Sbjct: 241 SNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTV 300

Query: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360
           YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG
Sbjct: 301 YCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVG 360

Query: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420
           SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
Sbjct: 361 SENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL 420

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG QHNYLCAGRNDCIIDKIRRKNCPACRYR
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEG-QHNYLCAGRNDCIIDKIRRKNCPACRYR 479

Query: 481 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 540
           KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI
Sbjct: 480 KCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVI 539

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
           EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS
Sbjct: 540 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 599

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 660
           WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS
Sbjct: 600 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVS 659

Query: 661 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 720
           YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT
Sbjct: 660 YEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLT 719

Query: 721 KLLDSMHEVV 730
           KLLDSMHE V
Sbjct: 720 KLLDSMHENV 729


>gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Homo
           sapiens]
          Length = 984

 Score =  466 bits (1200), Expect = e-131
 Identities = 255/519 (49%), Positives = 332/519 (63%), Gaps = 56/519 (10%)

Query: 290 GVIKQEKLGTVYCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMN---TASLSQQQD 346
           G+ ++   G+ Y +AS P + I+G             SGGQ +HY +    T SLS+   
Sbjct: 492 GIKQEPDDGSYYPEASIPSSAIVG-----------VNSGGQSFHYRIGAQGTISLSRSAR 540

Query: 347 QKPIFNV--IPPIPVGSENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS 404
            +   ++   PP+    E+W   +  GD  L+S  +  +P         SS ++R     
Sbjct: 541 DQSFQHLSSFPPVNTLVESW---KSHGD--LSSRRSDGYPVLEYIPENVSSSTLR----- 590

Query: 405 PPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDC 464
               S +  +  P K+CLVC DEASGCHYGV+TCGSCKVFFKRAVEG QHNYLCAGRNDC
Sbjct: 591 ----SVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFKRAVEG-QHNYLCAGRNDC 645

Query: 465 IIDKIRRKNCPACRYRKCLQAGMNLEARKTKK--KIKGIQQATTGVSQETSENP------ 516
           IIDKIRRKNCPACR +KCLQAGMNL ARK+KK  K+KGI +      Q     P      
Sbjct: 646 IIDKIRRKNCPACRLQKCLQAGMNLGARKSKKLGKLKGIHEEQPQQQQPPPPPPPPQSPE 705

Query: 517 -GNKTIVPATLPQ---------------LTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRI 560
            G   I PA  P                LTP+ V +LE IEPE++YAGYDSS PD+   +
Sbjct: 706 EGTTYIAPAKEPSVNTALVPQLSTISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENL 765

Query: 561 MTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSAN 620
           ++TLN L G+Q+I  VKWAK +PGF+NL L+DQ+TL+QYSWM L +FAL WRSY+ +++ 
Sbjct: 766 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQ 825

Query: 621 LLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDG 680
            L FAPDL+ NE++M    MY+ C+ M  +S +  RLQ+++EEY  MK LLLLS++PKDG
Sbjct: 826 FLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDG 885

Query: 681 LKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQT 740
           LKSQ  F+E+R  YIKEL K + K   NS Q+WQRFYQLTKLLDSMH++V +LL +CF T
Sbjct: 886 LKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYT 945

Query: 741 FLDK-TMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           F +   + +EFP ML EII++Q+PK  +GN K L FH+K
Sbjct: 946 FRESHALKVEFPAMLVEIISDQLPKVESGNAKPLYFHRK 984


>gi|110611914 progesterone receptor [Homo sapiens]
          Length = 933

 Score =  425 bits (1093), Expect = e-119
 Identities = 214/391 (54%), Positives = 278/391 (71%), Gaps = 12/391 (3%)

Query: 398 MRPDVSSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYL 457
           +RPD S    S   +    P K+CL+C DEASGCHYGVLTCGSCKVFFKRA+EG QHNYL
Sbjct: 545 LRPD-SEASQSPQYSFESLPQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEG-QHNYL 602

Query: 458 CAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK--KIKGIQQATT-------GV 508
           CAGRNDCI+DKIRRKNCPACR RKC QAGM L  RK KK  K++ ++           GV
Sbjct: 603 CAGRNDCIVDKIRRKNCPACRLRKCCQAGMVLGGRKFKKFNKVRVVRALDAVALPQPVGV 662

Query: 509 SQETSENPGNKTIVPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLG 568
             E+       T  P    QL P L++LL  IEP+V+YAG+D++ PD++  ++T+LN LG
Sbjct: 663 PNESQALSQRFTFSPGQDIQLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLG 722

Query: 569 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDL 628
            RQ+++ VKW+K++PGFRNLH+DDQ+TL+QYSWM LM F LGWRSY+  S  +L FAPDL
Sbjct: 723 ERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDL 782

Query: 629 IINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFD 688
           I+NEQRM     Y  C  M  +  E  +LQVS EE+LCMK LLLL+++P +GL+SQ  F+
Sbjct: 783 ILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFE 842

Query: 689 EIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFL-DKTMS 747
           E+R +YI+EL KAI  R+     + QRFYQLTKLLD++H++V+ L  YC  TF+  + +S
Sbjct: 843 EMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALS 902

Query: 748 IEFPEMLAEIITNQIPKYSNGNIKKLLFHQK 778
           +EFPEM++E+I  Q+PK   G +K LLFH+K
Sbjct: 903 VEFPEMMSEVIAAQLPKILAGMVKPLLFHKK 933


>gi|58535455 androgen receptor isoform 2 [Homo sapiens]
          Length = 388

 Score =  389 bits (999), Expect = e-108
 Identities = 193/368 (52%), Positives = 255/368 (69%), Gaps = 11/368 (2%)

Query: 416 PPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCP 475
           PP K CL+C DEASGCHYG LTCGSCKVFFKRA EG+Q  YLCA RNDC IDK RRKNCP
Sbjct: 23  PPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQ-KYLCASRNDCTIDKFRRKNCP 81

Query: 476 ACRYRKCLQAGMNLEARKTKK------KIKGIQQATTGVSQETSENPGNKTIVPATLPQL 529
           +CR RKC +AGM L ARK KK      + +G   +TT  ++ET++     T+      + 
Sbjct: 82  SCRLRKCYEAGMTLGARKLKKLGNLKLQEEGEASSTTSPTEETTQK---LTVSHIEGYEC 138

Query: 530 TPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLH 589
            P  +++LE IEP V+ AG+D++ PDS   ++++LN LG RQ++  VKWAKA+PGFRNLH
Sbjct: 139 QPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLH 198

Query: 590 LDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLY 649
           +DDQM ++QYSWM LM FA+GWRS+   ++ +L FAPDL+ NE RM    MY QC  M +
Sbjct: 199 VDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRH 258

Query: 650 VSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNS 709
           +S E   LQ++ +E+LCMK LLL S +P DGLK+Q+ FDE+RM YIKEL + I  +  N 
Sbjct: 259 LSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNP 318

Query: 710 SQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTM-SIEFPEMLAEIITNQIPKYSNG 768
           +   +RFYQLTKLLDS+  +   L  + F   +   M S++FPEM+AEII+ Q+PK  +G
Sbjct: 319 TSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSG 378

Query: 769 NIKKLLFH 776
            +K + FH
Sbjct: 379 KVKPIYFH 386


>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
          Length = 920

 Score =  389 bits (999), Expect = e-108
 Identities = 193/368 (52%), Positives = 255/368 (69%), Gaps = 11/368 (2%)

Query: 416 PPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCP 475
           PP K CL+C DEASGCHYG LTCGSCKVFFKRA EG+Q  YLCA RNDC IDK RRKNCP
Sbjct: 555 PPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQ-KYLCASRNDCTIDKFRRKNCP 613

Query: 476 ACRYRKCLQAGMNLEARKTKK------KIKGIQQATTGVSQETSENPGNKTIVPATLPQL 529
           +CR RKC +AGM L ARK KK      + +G   +TT  ++ET++     T+      + 
Sbjct: 614 SCRLRKCYEAGMTLGARKLKKLGNLKLQEEGEASSTTSPTEETTQK---LTVSHIEGYEC 670

Query: 530 TPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLH 589
            P  +++LE IEP V+ AG+D++ PDS   ++++LN LG RQ++  VKWAKA+PGFRNLH
Sbjct: 671 QPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLH 730

Query: 590 LDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLY 649
           +DDQM ++QYSWM LM FA+GWRS+   ++ +L FAPDL+ NE RM    MY QC  M +
Sbjct: 731 VDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRH 790

Query: 650 VSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNS 709
           +S E   LQ++ +E+LCMK LLL S +P DGLK+Q+ FDE+RM YIKEL + I  +  N 
Sbjct: 791 LSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNP 850

Query: 710 SQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTM-SIEFPEMLAEIITNQIPKYSNG 768
           +   +RFYQLTKLLDS+  +   L  + F   +   M S++FPEM+AEII+ Q+PK  +G
Sbjct: 851 TSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSG 910

Query: 769 NIKKLLFH 776
            +K + FH
Sbjct: 911 KVKPIYFH 918


>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
           sapiens]
          Length = 435

 Score =  176 bits (445), Expect = 1e-43
 Identities = 102/274 (37%), Positives = 150/274 (54%), Gaps = 5/274 (1%)

Query: 402 VSSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGR 461
           V  P +         P +LCLVC D ASG HYGV +C +CK FFKR ++G    Y C   
Sbjct: 86  VEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPAT 144

Query: 462 NDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTI 521
           N+C I K RRK+C ACR+ KCL+ GM  E  +  +   G Q+    +  E S     + +
Sbjct: 145 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLV 204

Query: 522 VPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKA 581
            PA  P     +VS L V EPE +YA  D +VPDS  + +TTL  L  R+++  + WAK 
Sbjct: 205 QPAKKPY--NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKH 262

Query: 582 IPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMY 641
           IPGF  L L DQM+LLQ +WM ++   + +RS   S  + L +A D I++E +  L  + 
Sbjct: 263 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 320

Query: 642 DQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 675
           D    +L +  +   +++  EE++ +K + L +S
Sbjct: 321 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANS 354


>gi|45545427 estrogen-related receptor gamma isoform 2 [Homo
           sapiens]
          Length = 435

 Score =  176 bits (445), Expect = 1e-43
 Identities = 102/274 (37%), Positives = 150/274 (54%), Gaps = 5/274 (1%)

Query: 402 VSSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGR 461
           V  P +         P +LCLVC D ASG HYGV +C +CK FFKR ++G    Y C   
Sbjct: 86  VEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPAT 144

Query: 462 NDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTI 521
           N+C I K RRK+C ACR+ KCL+ GM  E  +  +   G Q+    +  E S     + +
Sbjct: 145 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLV 204

Query: 522 VPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKA 581
            PA  P     +VS L V EPE +YA  D +VPDS  + +TTL  L  R+++  + WAK 
Sbjct: 205 QPAKKPY--NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKH 262

Query: 582 IPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMY 641
           IPGF  L L DQM+LLQ +WM ++   + +RS   S  + L +A D I++E +  L  + 
Sbjct: 263 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 320

Query: 642 DQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 675
           D    +L +  +   +++  EE++ +K + L +S
Sbjct: 321 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANS 354


>gi|45545433 estrogen-related receptor gamma isoform 1 [Homo
           sapiens]
          Length = 458

 Score =  176 bits (445), Expect = 1e-43
 Identities = 102/274 (37%), Positives = 150/274 (54%), Gaps = 5/274 (1%)

Query: 402 VSSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGR 461
           V  P +         P +LCLVC D ASG HYGV +C +CK FFKR ++G    Y C   
Sbjct: 109 VEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPAT 167

Query: 462 NDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTI 521
           N+C I K RRK+C ACR+ KCL+ GM  E  +  +   G Q+    +  E S     + +
Sbjct: 168 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLV 227

Query: 522 VPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKA 581
            PA  P     +VS L V EPE +YA  D +VPDS  + +TTL  L  R+++  + WAK 
Sbjct: 228 QPAKKPY--NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKH 285

Query: 582 IPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMY 641
           IPGF  L L DQM+LLQ +WM ++   + +RS   S  + L +A D I++E +  L  + 
Sbjct: 286 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 343

Query: 642 DQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 675
           D    +L +  +   +++  EE++ +K + L +S
Sbjct: 344 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANS 377


>gi|197209821 estrogen-related receptor gamma isoform 2 [Homo
           sapiens]
          Length = 435

 Score =  176 bits (445), Expect = 1e-43
 Identities = 102/274 (37%), Positives = 150/274 (54%), Gaps = 5/274 (1%)

Query: 402 VSSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGR 461
           V  P +         P +LCLVC D ASG HYGV +C +CK FFKR ++G    Y C   
Sbjct: 86  VEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPAT 144

Query: 462 NDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTI 521
           N+C I K RRK+C ACR+ KCL+ GM  E  +  +   G Q+    +  E S     + +
Sbjct: 145 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLV 204

Query: 522 VPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKA 581
            PA  P     +VS L V EPE +YA  D +VPDS  + +TTL  L  R+++  + WAK 
Sbjct: 205 QPAKKPY--NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKH 262

Query: 582 IPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMY 641
           IPGF  L L DQM+LLQ +WM ++   + +RS   S  + L +A D I++E +  L  + 
Sbjct: 263 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 320

Query: 642 DQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 675
           D    +L +  +   +++  EE++ +K + L +S
Sbjct: 321 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANS 354


>gi|238550159 estrogen-related receptor beta [Homo sapiens]
          Length = 508

 Score =  168 bits (426), Expect = 2e-41
 Identities = 97/259 (37%), Positives = 145/259 (55%), Gaps = 5/259 (1%)

Query: 417 PPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPA 476
           P +LCLVC D ASG HYGV +C +CK FFKR ++G    Y C   N+C I K RRK+C A
Sbjct: 99  PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIE-YSCPATNECEITKRRRKSCQA 157

Query: 477 CRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSL 536
           CR+ KCL+ GM  E  +  +   G Q+    +  E+S     +   PA  P     +VS 
Sbjct: 158 CRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSESSPYLSLQISPPAKKP--LTKIVSY 215

Query: 537 LEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTL 596
           L V EP+ LYA     +P+   + +TTL  L  R+++  + WAK IPGF +L L DQM+L
Sbjct: 216 LLVAEPDKLYAMPPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSL 275

Query: 597 LQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHR 656
           LQ +WM ++   + +RS      + L +A D I++E+   L  + +  + +L +     +
Sbjct: 276 LQSAWMEILILGIVYRSLPYD--DKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKK 333

Query: 657 LQVSYEEYLCMKTLLLLSS 675
           L+V  EE++ +K L L +S
Sbjct: 334 LKVEKEEFVTLKALALANS 352


>gi|18860920 estrogen-related receptor alpha [Homo sapiens]
          Length = 423

 Score =  163 bits (412), Expect = 6e-40
 Identities = 100/266 (37%), Positives = 141/266 (53%), Gaps = 10/266 (3%)

Query: 417 PPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPA 476
           P +LCLVC D ASG HYGV +C +CK FFKR ++G    Y C   N+C I K RRK C A
Sbjct: 75  PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQG-SIEYSCPASNECEITKRRRKACQA 133

Query: 477 CRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSENPGNKTIVPATL---PQLTPT- 532
           CR+ KCL+ GM  E  +  +   G Q+       +    PG     P  +   P+ T   
Sbjct: 134 CRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAP 193

Query: 533 ---LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLH 589
              LVS L V+EPE LYA  D + PD     + TL  L  R+++  + WAK+IPGF +L 
Sbjct: 194 VNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLS 253

Query: 590 LDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLY 649
           L DQM++LQ  WM ++   +  RS        L FA DL+++E+      + +    +L 
Sbjct: 254 LSDQMSVLQSVWMEVLVLGVAQRSLPLQDE--LAFAEDLVLDEEGARAAGLGELGAALLQ 311

Query: 650 VSSELHRLQVSYEEYLCMKTLLLLSS 675
           +   L  L++  EEY+ +K L L +S
Sbjct: 312 LVRRLQALRLEREEYVLLKALALANS 337


>gi|170295804 estrogen receptor alpha isoform 4 [Homo sapiens]
          Length = 595

 Score =  160 bits (405), Expect = 4e-39
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 38/358 (10%)

Query: 403 SSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRN 462
           S+    S    +    + C VC+D ASG HYGV +C  CK FFKR+++G  ++Y+C   N
Sbjct: 167 STNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYMCPATN 225

Query: 463 DCIIDKIRRKNCPACRYRKCLQAGMNL----EARKTKKKIKGIQQATTGVSQETSENPGN 518
            C IDK RRK+C ACR RKC + GM      + R+  + +K  +Q   G  +    + G+
Sbjct: 226 QCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGD 285

Query: 519 KTIV---------------PATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTT 563
                                 L      +VS L   EP +LY+ YD + P S   +M  
Sbjct: 286 MRAANLWPSPLMIKRSKKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGL 345

Query: 564 LNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLC 623
           L  L  R+++  + WAK +PGF +L L DQ+ LL+ +W+ ++   L WRS        L 
Sbjct: 346 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGK--LL 403

Query: 624 FAPDLIIN-EQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS----VPK 678
           FAP+L+++  Q   +  M +    +L  SS    + +  EE++C+K+++LL+S       
Sbjct: 404 FAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS 463

Query: 679 DGLKSQE-------LFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 729
             LKS E       + D+I  T I  + KA +  +    Q  QR  QL  +L  +  +
Sbjct: 464 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQ----QQHQRLAQLLLILSHIRHM 517


>gi|170295802 estrogen receptor alpha isoform 3 [Homo sapiens]
          Length = 595

 Score =  160 bits (405), Expect = 4e-39
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 38/358 (10%)

Query: 403 SSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRN 462
           S+    S    +    + C VC+D ASG HYGV +C  CK FFKR+++G  ++Y+C   N
Sbjct: 167 STNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYMCPATN 225

Query: 463 DCIIDKIRRKNCPACRYRKCLQAGMNL----EARKTKKKIKGIQQATTGVSQETSENPGN 518
            C IDK RRK+C ACR RKC + GM      + R+  + +K  +Q   G  +    + G+
Sbjct: 226 QCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGD 285

Query: 519 KTIV---------------PATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTT 563
                                 L      +VS L   EP +LY+ YD + P S   +M  
Sbjct: 286 MRAANLWPSPLMIKRSKKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGL 345

Query: 564 LNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLC 623
           L  L  R+++  + WAK +PGF +L L DQ+ LL+ +W+ ++   L WRS        L 
Sbjct: 346 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGK--LL 403

Query: 624 FAPDLIIN-EQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS----VPK 678
           FAP+L+++  Q   +  M +    +L  SS    + +  EE++C+K+++LL+S       
Sbjct: 404 FAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS 463

Query: 679 DGLKSQE-------LFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 729
             LKS E       + D+I  T I  + KA +  +    Q  QR  QL  +L  +  +
Sbjct: 464 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQ----QQHQRLAQLLLILSHIRHM 517


>gi|170295800 estrogen receptor alpha isoform 2 [Homo sapiens]
          Length = 595

 Score =  160 bits (405), Expect = 4e-39
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 38/358 (10%)

Query: 403 SSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRN 462
           S+    S    +    + C VC+D ASG HYGV +C  CK FFKR+++G  ++Y+C   N
Sbjct: 167 STNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYMCPATN 225

Query: 463 DCIIDKIRRKNCPACRYRKCLQAGMNL----EARKTKKKIKGIQQATTGVSQETSENPGN 518
            C IDK RRK+C ACR RKC + GM      + R+  + +K  +Q   G  +    + G+
Sbjct: 226 QCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGD 285

Query: 519 KTIV---------------PATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTT 563
                                 L      +VS L   EP +LY+ YD + P S   +M  
Sbjct: 286 MRAANLWPSPLMIKRSKKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGL 345

Query: 564 LNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLC 623
           L  L  R+++  + WAK +PGF +L L DQ+ LL+ +W+ ++   L WRS        L 
Sbjct: 346 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGK--LL 403

Query: 624 FAPDLIIN-EQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS----VPK 678
           FAP+L+++  Q   +  M +    +L  SS    + +  EE++C+K+++LL+S       
Sbjct: 404 FAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS 463

Query: 679 DGLKSQE-------LFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 729
             LKS E       + D+I  T I  + KA +  +    Q  QR  QL  +L  +  +
Sbjct: 464 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQ----QQHQRLAQLLLILSHIRHM 517


>gi|62821794 estrogen receptor alpha isoform 1 [Homo sapiens]
          Length = 595

 Score =  160 bits (405), Expect = 4e-39
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 38/358 (10%)

Query: 403 SSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRN 462
           S+    S    +    + C VC+D ASG HYGV +C  CK FFKR+++G  ++Y+C   N
Sbjct: 167 STNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYMCPATN 225

Query: 463 DCIIDKIRRKNCPACRYRKCLQAGMNL----EARKTKKKIKGIQQATTGVSQETSENPGN 518
            C IDK RRK+C ACR RKC + GM      + R+  + +K  +Q   G  +    + G+
Sbjct: 226 QCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRGEVGSAGD 285

Query: 519 KTIV---------------PATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTT 563
                                 L      +VS L   EP +LY+ YD + P S   +M  
Sbjct: 286 MRAANLWPSPLMIKRSKKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGL 345

Query: 564 LNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLC 623
           L  L  R+++  + WAK +PGF +L L DQ+ LL+ +W+ ++   L WRS        L 
Sbjct: 346 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGK--LL 403

Query: 624 FAPDLIIN-EQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS----VPK 678
           FAP+L+++  Q   +  M +    +L  SS    + +  EE++C+K+++LL+S       
Sbjct: 404 FAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS 463

Query: 679 DGLKSQE-------LFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 729
             LKS E       + D+I  T I  + KA +  +    Q  QR  QL  +L  +  +
Sbjct: 464 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQ----QQHQRLAQLLLILSHIRHM 517


>gi|94538328 estrogen receptor beta isoform 2 [Homo sapiens]
          Length = 495

 Score =  156 bits (394), Expect = 8e-38
 Identities = 113/368 (30%), Positives = 183/368 (49%), Gaps = 28/368 (7%)

Query: 410 STATTGPPPK----LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCI 465
           ++  TGP  K     C VCSD ASG HYGV +C  CK FFKR+++G  ++Y+C   N C 
Sbjct: 134 ASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYICPATNQCT 192

Query: 466 IDKIRRKNCPACRYRKCLQAGM-NLEARKTKKKIKGIQQATTGVSQETSENPGNKT---- 520
           IDK RRK+C ACR RKC + GM    +R+ +   + +++  +   Q        ++    
Sbjct: 193 IDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHA 252

Query: 521 --IVPATLPQLTPT--LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAV 576
             +    L  L+P   +++LLE   P VL +    S P +   +M +L  L  ++++  +
Sbjct: 253 PRVRELLLDALSPEQLVLTLLEAEPPHVLISR--PSAPFTEASMMMSLTKLADKELVHMI 310

Query: 577 KWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIIN-EQRM 635
            WAK IPGF  L L DQ+ LL+  WM ++   L WRS        L FAPDL+++ ++  
Sbjct: 311 SWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSI--DHPGKLIFAPDLVLDRDEGK 368

Query: 636 TLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIR---- 691
            +  + +    +L  +S    L++ ++EYLC+K ++LL+S     + + +  D  R    
Sbjct: 369 CVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAH 428

Query: 692 -MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMSIE- 749
            +  + +    ++ + G SSQ  Q+  +L  LL  +  V         QT     M +E 
Sbjct: 429 LLNAVTDALVWVIAKSGISSQ--QQSMRLANLLMLLSHVRHARAEKASQTLTSFGMKMET 486

Query: 750 -FPEMLAE 756
             PE   E
Sbjct: 487 LLPEATME 494


>gi|94538325 estrogen receptor beta isoform 2 [Homo sapiens]
          Length = 495

 Score =  156 bits (394), Expect = 8e-38
 Identities = 113/368 (30%), Positives = 183/368 (49%), Gaps = 28/368 (7%)

Query: 410 STATTGPPPK----LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCI 465
           ++  TGP  K     C VCSD ASG HYGV +C  CK FFKR+++G  ++Y+C   N C 
Sbjct: 134 ASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYICPATNQCT 192

Query: 466 IDKIRRKNCPACRYRKCLQAGM-NLEARKTKKKIKGIQQATTGVSQETSENPGNKT---- 520
           IDK RRK+C ACR RKC + GM    +R+ +   + +++  +   Q        ++    
Sbjct: 193 IDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHA 252

Query: 521 --IVPATLPQLTPT--LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAV 576
             +    L  L+P   +++LLE   P VL +    S P +   +M +L  L  ++++  +
Sbjct: 253 PRVRELLLDALSPEQLVLTLLEAEPPHVLISR--PSAPFTEASMMMSLTKLADKELVHMI 310

Query: 577 KWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIIN-EQRM 635
            WAK IPGF  L L DQ+ LL+  WM ++   L WRS        L FAPDL+++ ++  
Sbjct: 311 SWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSI--DHPGKLIFAPDLVLDRDEGK 368

Query: 636 TLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIR---- 691
            +  + +    +L  +S    L++ ++EYLC+K ++LL+S     + + +  D  R    
Sbjct: 369 CVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAH 428

Query: 692 -MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMSIE- 749
            +  + +    ++ + G SSQ  Q+  +L  LL  +  V         QT     M +E 
Sbjct: 429 LLNAVTDALVWVIAKSGISSQ--QQSMRLANLLMLLSHVRHARAEKASQTLTSFGMKMET 486

Query: 750 -FPEMLAE 756
             PE   E
Sbjct: 487 LLPEATME 494


>gi|10835013 estrogen receptor beta isoform 1 [Homo sapiens]
          Length = 530

 Score =  155 bits (393), Expect = 1e-37
 Identities = 110/352 (31%), Positives = 181/352 (51%), Gaps = 33/352 (9%)

Query: 410 STATTGPPPK----LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCI 465
           ++  TGP  K     C VCSD ASG HYGV +C  CK FFKR+++G  ++Y+C   N C 
Sbjct: 134 ASPVTGPGSKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYICPATNQCT 192

Query: 466 IDKIRRKNCPACRYRKCLQAGM-NLEARKTKKKIKGIQQATTGVSQETSENPGNKT---- 520
           IDK RRK+C ACR RKC + GM    +R+ +   + +++  +   Q        ++    
Sbjct: 193 IDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHA 252

Query: 521 --IVPATLPQLTPT--LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAV 576
             +    L  L+P   +++LLE   P VL +    S P +   +M +L  L  ++++  +
Sbjct: 253 PRVRELLLDALSPEQLVLTLLEAEPPHVLISR--PSAPFTEASMMMSLTKLADKELVHMI 310

Query: 577 KWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIIN-EQRM 635
            WAK IPGF  L L DQ+ LL+  WM ++   L WRS        L FAPDL+++ ++  
Sbjct: 311 SWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSI--DHPGKLIFAPDLVLDRDEGK 368

Query: 636 TLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIR---- 691
            +  + +    +L  +S    L++ ++EYLC+K ++LL+S     + + +  D  R    
Sbjct: 369 CVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAH 428

Query: 692 -MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV-------VENLLN 735
            +  + +    ++ + G SSQ  Q+  +L  LL  +  V       +E+LLN
Sbjct: 429 LLNAVTDALVWVIAKSGISSQ--QQSMRLANLLMLLSHVRHASNKGMEHLLN 478


>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
           sapiens]
          Length = 598

 Score =  117 bits (293), Expect = 4e-26
 Identities = 104/400 (26%), Positives = 175/400 (43%), Gaps = 35/400 (8%)

Query: 340 SLSQQQDQKPIFNVIPPIPVGSENWNRCQGSGDDN-LTSLGTLNFPGRTVFSNGYSSPSM 398
           S  Q +   P+   + P P GS +    Q     N +    ++ FPG  +   G++S  +
Sbjct: 188 SSCQMRFDGPLHVPMNPEPAGSHHVVDGQTFAVPNPIRKPASMGFPGLQI---GHASQLL 244

Query: 399 RPDVSSPPSSSSTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLC 458
              V SPPS  S +  G    LC VC D A+  HYGV TC  CK FFKR V+ +   Y+C
Sbjct: 245 DTQVPSPPSRGSPSNEG----LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQ-KNAKYVC 299

Query: 459 AGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTK--KKIKGIQQATTGVSQETSENP 516
               +C +DK RR  C  CR++KCL  GM  E  +T   K  +G   +     QE S   
Sbjct: 300 LANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPS 359

Query: 517 GNKTIVPATL-------PQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGG 569
              +++ A +       P +T    S  +   P+   +G D+      + ++T     G 
Sbjct: 360 PPVSLISALVRAHVDSNPAMTSLDYSRFQA-NPDYQMSGDDTQHIQQFYDLLT-----GS 413

Query: 570 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLI 629
            ++I    WA+ IPGF +L   DQ  L + +++ L    L +RS       + C   + +
Sbjct: 414 MEIIRG--WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFC---NGV 468

Query: 630 INEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDE 689
           +  +   +    +    ++  SS L  + +    + C+  L +++   + GLK  +  +E
Sbjct: 469 VLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTE--RHGLKEPKRVEE 526

Query: 690 IRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 729
           ++   +  L   +    G  +    R   L+KLL  + E+
Sbjct: 527 LQNKIVNCLKDHVTFNNGGLN----RPNYLSKLLGKLPEL 562


>gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Homo
           sapiens]
          Length = 404

 Score =  117 bits (293), Expect = 4e-26
 Identities = 87/286 (30%), Positives = 128/286 (44%), Gaps = 16/286 (5%)

Query: 401 DVSSPPSSSSTATTGPPPKL-----CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHN 455
           D +SPP ++S A  G   +      C+VC D++SG HYGV TC  CK FFKR++  R  +
Sbjct: 31  DSASPPGAASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIR-RNLS 89

Query: 456 YLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQATTGVSQETSEN 515
           Y C    DC ID+  R  C  CR +KC + GM  EA +  +    +  A   V+  +   
Sbjct: 90  YTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLPGA---VAASSGSP 146

Query: 516 PGNKTIVPATLPQLTP-----TLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNM--LG 568
           PG+     A+   L P      L++ L   EP    AG   +   +   ++   N+  L 
Sbjct: 147 PGSALAAVASGGDLFPGQPVSELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELA 206

Query: 569 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDL 628
            R + + V+WA+  P F  L + DQ+ LL+ SW  L        +    +A LL  A   
Sbjct: 207 ARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLH 266

Query: 629 IINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLS 674
                        DQ +       +L RLQV   EY C+K + L +
Sbjct: 267 AAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 312


>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
           sapiens]
          Length = 598

 Score =  114 bits (286), Expect = 3e-25
 Identities = 145/514 (28%), Positives = 216/514 (42%), Gaps = 59/514 (11%)

Query: 216 DLLIDENCLLSPLAGEDDSFLLEGNSNE-DCKPLILPDT-KPKIKDNGDLVLSSPSNVTL 273
           DL   E    +P A    S  ++G + E D     LP T +P    +     +S S+ T 
Sbjct: 36  DLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATS 95

Query: 274 PQVKTEK-EDF-IELCTPGVIKQEKLGTVYCQASFPGANIIGNKMSAISVHGVSTSGGQM 331
           P   + K EDF +  C PG +     G V    S  G++  G+  SA S    S    Q+
Sbjct: 96  PASASFKFEDFQVYGCYPGPLS----GPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQL 151

Query: 332 YHYDMNTASLSQQQ---------DQKPIFNVIPPIPVGSENWNRCQGSGDDNLTSLGTLN 382
             +D +    S  Q         +Q P  +  PP P    +++   G       S   L 
Sbjct: 152 SPWDGSFGHFSPSQTYEGLRAWTEQLPKASG-PPQPPAFFSFSPPTGPSPSLAQSPLKL- 209

Query: 383 FPGRTVFSNG----YSSPSMRPDVS--SP----------PSSSSTATTGPP---PKLCLV 423
           FP +     G    YS P+  P ++  SP          P +S+ A +G P      C V
Sbjct: 210 FPSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAV 269

Query: 424 CSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCL 483
           C D AS  HYGV TC  CK FFKR V+ +   Y+C    DC +DK RR  C  CR++KCL
Sbjct: 270 CGDNASCQHYGVRTCEGCKGFFKRTVQ-KNAKYICLANKDCPVDKRRRNRCQFCRFQKCL 328

Query: 484 QAGMNLEARKTKKKIKGIQ-QATTGVSQETSENPGN--KTIVPATLPQLTPTLVSLLEVI 540
             GM  E  +T   +KG + +  +   Q    +P N   ++V A L    P+   L    
Sbjct: 329 AVGMVKEVVRT-DSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDS-GPSTAKLDYSK 386

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
             E++   +         +    L+  G  +VI   KWA+ IPGF  L   DQ  LL+ +
Sbjct: 387 FQELVLPHFGKEDAGDVQQFYDLLS--GSLEVIR--KWAEKIPGFAELSPADQDLLLESA 442

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPC---MYDQCKHMLYVSSELHRL 657
           ++ L    L +RS  +     L F   L+++     L C     D    +L  S  LH L
Sbjct: 443 FLELFILRLAYRS--KPGEGKLIFCSGLVLHR----LQCARGFGDWIDSILAFSRSLHSL 496

Query: 658 QVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIR 691
            V    + C+  L+L++   + GL+     +E++
Sbjct: 497 LVDVPAFACLSALVLITD--RHGLQEPRRVEELQ 528


>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
           sapiens]
          Length = 598

 Score =  114 bits (286), Expect = 3e-25
 Identities = 145/514 (28%), Positives = 216/514 (42%), Gaps = 59/514 (11%)

Query: 216 DLLIDENCLLSPLAGEDDSFLLEGNSNE-DCKPLILPDT-KPKIKDNGDLVLSSPSNVTL 273
           DL   E    +P A    S  ++G + E D     LP T +P    +     +S S+ T 
Sbjct: 36  DLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATS 95

Query: 274 PQVKTEK-EDF-IELCTPGVIKQEKLGTVYCQASFPGANIIGNKMSAISVHGVSTSGGQM 331
           P   + K EDF +  C PG +     G V    S  G++  G+  SA S    S    Q+
Sbjct: 96  PASASFKFEDFQVYGCYPGPLS----GPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQL 151

Query: 332 YHYDMNTASLSQQQ---------DQKPIFNVIPPIPVGSENWNRCQGSGDDNLTSLGTLN 382
             +D +    S  Q         +Q P  +  PP P    +++   G       S   L 
Sbjct: 152 SPWDGSFGHFSPSQTYEGLRAWTEQLPKASG-PPQPPAFFSFSPPTGPSPSLAQSPLKL- 209

Query: 383 FPGRTVFSNG----YSSPSMRPDVS--SP----------PSSSSTATTGPP---PKLCLV 423
           FP +     G    YS P+  P ++  SP          P +S+ A +G P      C V
Sbjct: 210 FPSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAV 269

Query: 424 CSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCL 483
           C D AS  HYGV TC  CK FFKR V+ +   Y+C    DC +DK RR  C  CR++KCL
Sbjct: 270 CGDNASCQHYGVRTCEGCKGFFKRTVQ-KNAKYICLANKDCPVDKRRRNRCQFCRFQKCL 328

Query: 484 QAGMNLEARKTKKKIKGIQ-QATTGVSQETSENPGN--KTIVPATLPQLTPTLVSLLEVI 540
             GM  E  +T   +KG + +  +   Q    +P N   ++V A L    P+   L    
Sbjct: 329 AVGMVKEVVRT-DSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDS-GPSTAKLDYSK 386

Query: 541 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 600
             E++   +         +    L+  G  +VI   KWA+ IPGF  L   DQ  LL+ +
Sbjct: 387 FQELVLPHFGKEDAGDVQQFYDLLS--GSLEVIR--KWAEKIPGFAELSPADQDLLLESA 442

Query: 601 WMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPC---MYDQCKHMLYVSSELHRL 657
           ++ L    L +RS  +     L F   L+++     L C     D    +L  S  LH L
Sbjct: 443 FLELFILRLAYRS--KPGEGKLIFCSGLVLHR----LQCARGFGDWIDSILAFSRSLHSL 496

Query: 658 QVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIR 691
            V    + C+  L+L++   + GL+     +E++
Sbjct: 497 LVDVPAFACLSALVLITD--RHGLQEPRRVEELQ 528


>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
          Length = 462

 Score =  113 bits (283), Expect = 6e-25
 Identities = 105/393 (26%), Positives = 171/393 (43%), Gaps = 44/393 (11%)

Query: 316 MSAISVH-----GVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSENWNRCQGS 370
           M+A S+H     G+ + G    H  ++T S        PI  + PP  V S       G 
Sbjct: 28  MAAPSLHPSLGPGIGSPG--QLHSPISTLS-------SPINGMGPPFSVISSP----MGP 74

Query: 371 GDDNLTSLGTLNFP-GRTVFSNGYSSPSMRPDVSSP---------PSSSSTATTGPPPKL 420
              ++ +  TL F  G    S+  +  S   D+  P         P+  S         +
Sbjct: 75  HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 134

Query: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYR 480
           C +C D +SG HYGV +C  CK FFKR V  +   Y C    DC+IDK +R  C  CRY+
Sbjct: 135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVR-KDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 193

Query: 481 KCLQAGMNLEA-RKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEV 539
           KCL  GM  EA ++ +++ K   +     +   +E+   + I+ A L  + P   + +E 
Sbjct: 194 KCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAEL-AVEPKTETYVEA 252

Query: 540 IEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQY 599
                   G + S P+     +T +     +Q+   V+WAK IP F  L LDDQ+ LL+ 
Sbjct: 253 ------NMGLNPSSPNDP---VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRA 303

Query: 600 SWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMT-LPCMYDQCKHMLYVSSELHRLQ 658
            W  L+  +   RS       LL     +  N      +  ++D+   +  + S++  +Q
Sbjct: 304 GWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRV--LTELVSKMRDMQ 361

Query: 659 VSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIR 691
           +   E  C++ ++L +   K GL +    + +R
Sbjct: 362 MDKTELGCLRAIVLFNPDSK-GLSNPAEVEALR 393


>gi|11415052 retinoid X receptor, beta [Homo sapiens]
          Length = 533

 Score =  112 bits (280), Expect = 1e-24
 Identities = 103/401 (25%), Positives = 165/401 (41%), Gaps = 32/401 (7%)

Query: 354 IPPIPVGSENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTAT 413
           +PP P+GS         G   L       F G        S+ S+    S PP       
Sbjct: 124 MPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPV 183

Query: 414 TG-------PPP-------KLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCA 459
            G       PPP       +LC +C D +SG HYGV +C  CK FFKR +  +   Y C 
Sbjct: 184 LGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIR-KDLTYSCR 242

Query: 460 GRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA-RKTKKKIKGIQQATTGVSQETSENPGN 518
              DC +DK +R  C  CRY+KCL  GM  EA ++ +++ K       G      E P +
Sbjct: 243 DNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVD 302

Query: 519 KTIVPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKW 578
           + +      +         + +E      G  SS  D     +T +     +Q+   V+W
Sbjct: 303 RILEAELAVEQKSD-----QGVEGPGGTGGSGSSPNDP----VTNICQAADKQLFTLVEW 353

Query: 579 AKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIINEQRMT-L 637
           AK IP F +L LDDQ+ LL+  W  L+  +   RS       LL     +  N      +
Sbjct: 354 AKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGV 413

Query: 638 PCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKE 697
             ++D+   +  + S++  +++   E  C++ ++L +   K GL +    + +R      
Sbjct: 414 GAIFDRV--LTELVSKMRDMRMDKTELGCLRAIILFNPDAK-GLSNPSEVEVLREKVYAS 470

Query: 698 LGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCF 738
           L +   K++    Q   RF +L   L ++  +    L + F
Sbjct: 471 L-ETYCKQKYPEQQG--RFAKLLLRLPALRSIGLKCLEHLF 508


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,113,530
Number of Sequences: 37866
Number of extensions: 1480445
Number of successful extensions: 4734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 4315
Number of HSP's gapped (non-prelim): 277
length of query: 778
length of database: 18,247,518
effective HSP length: 110
effective length of query: 668
effective length of database: 14,082,258
effective search space: 9406948344
effective search space used: 9406948344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.