Guide to the Human Genome
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Name: ESR1 Sequence: fasta or formatted (595aa) NCBI GI: 170295804
Description:

estrogen receptor alpha isoform 4

Referenced in:

Organs and Hormones
Nuclear Receptors

Other entries for this name:
alt mRNA [595aa] estrogen receptor alpha isoform 2
alt mRNA [595aa] estrogen receptor alpha isoform 3
alt mRNA [595aa] estrogen receptor alpha isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         47           5
 C cysteine            2.2         13           1
 D aspartate           4.0         24           2
 E glutamate           6.1         36           2
 F phenylalanine       2.5         15           2
 G glycine             7.9         47           2
 H histidine           3.7         22           1
 I isoleucine          3.2         19           2
 K lysine              4.9         29           2
 L leucine            12.3         73           3
 M methionine          4.5         27           2
 N asparagine          4.2         25           1
 P proline             5.9         35           3
 Q glutamine           4.2         25           3
 R arginine            5.9         35           2
 S serine              7.6         45           2
 T threonine           4.2         25           1
 V valine              4.2         25           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   estrogen receptor alpha isoform 4 
ESR1                  1.000   estrogen receptor alpha isoform 3 
ESR1                  1.000   estrogen receptor alpha isoform 2 
ESR1                  1.000   estrogen receptor alpha isoform 1 
ESR2                  0.368   estrogen receptor beta isoform 1 
ESR2                  0.324   estrogen receptor beta isoform 2 
ESR2                  0.324   estrogen receptor beta isoform 2 
ESRRG                 0.200   estrogen-related receptor gamma isoform 2 
ESRRG                 0.200   estrogen-related receptor gamma isoform 2 
ESRRG                 0.200   estrogen-related receptor gamma isoform 1 
ESRRG                 0.200   estrogen-related receptor gamma isoform 2 
ESRRB                 0.195   estrogen-related receptor beta 
ESRRA                 0.183   estrogen-related receptor alpha 
PGR                   0.129   progesterone receptor 
RXRB                  0.127   retinoid X receptor, beta 
RXRA                  0.122   retinoid X receptor, alpha 
NR3C2                 0.121   nuclear receptor subfamily 3, group C, member 2 [Ho...
RXRG                  0.119   retinoid X receptor, gamma isoform a 
NR3C1                 0.118   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.118   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.118   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.118   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.118   nuclear receptor subfamily 3, group C, member 1 isofo...
NR3C1                 0.117   nuclear receptor subfamily 3, group C, member 1 isof...
AR                    0.115   androgen receptor isoform 1 
NR4A1                 0.115   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.115   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR3C1                 0.114   nuclear receptor subfamily 3, group C, member 1 isof...
AR                    0.112   androgen receptor isoform 2 
NR4A2                 0.109   nuclear receptor subfamily 4, group A, member 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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