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Search of human proteins with 66348062
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 506 e-144
gi|215422413 fumarylacetoacetate hydrolase domain containing 1 i... 435 e-122
gi|13654274 fumarylacetoacetate hydrolase domain containing 1 is... 435 e-122
gi|156231349 fumarylacetoacetate hydrolase domain containing 2A ... 145 2e-35
gi|40786394 fumarylacetoacetate hydrolase domain containing 2B [... 144 9e-35
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 54 1e-07
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 51 1e-06
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 48 7e-06
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 48 9e-06
gi|94680985 cyclin J-like [Homo sapiens] 45 6e-05
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 45 6e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens] 44 1e-04
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 44 2e-04
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 43 2e-04
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 43 2e-04
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 42 4e-04
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 42 5e-04
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 42 5e-04
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 40 0.001
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 40 0.002
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 39 0.003
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 39 0.003
gi|239757631 PREDICTED: hypothetical protein XP_002345506 [Homo ... 39 0.004
gi|239752121 PREDICTED: hypothetical protein XP_002348120 [Homo ... 39 0.004
gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo ... 39 0.004
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 38 0.007
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 37 0.016
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 36 0.027
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 36 0.027
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 36 0.027
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 506 bits (1304), Expect = e-144
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60
MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
Sbjct: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60
Query: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120
MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
Sbjct: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120
Query: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180
LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
Sbjct: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180
Query: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSS 240
TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSS
Sbjct: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSS 240
Query: 241 NPPSASRF 248
NPPSASRF
Sbjct: 241 NPPSASRF 248
>gi|215422413 fumarylacetoacetate hydrolase domain containing 1
isoform 3 [Homo sapiens]
Length = 226
Score = 435 bits (1118), Expect = e-122
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60
MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
Sbjct: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60
Query: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120
MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
Sbjct: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120
Query: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180
LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
Sbjct: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180
Query: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL 212
TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL
Sbjct: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL 212
>gi|13654274 fumarylacetoacetate hydrolase domain containing 1
isoform 2 [Homo sapiens]
Length = 224
Score = 435 bits (1118), Expect = e-122
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60
MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL
Sbjct: 1 MGIMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPIL 60
Query: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120
MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT
Sbjct: 61 MPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWT 120
Query: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180
LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII
Sbjct: 121 LAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKII 180
Query: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL 212
TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL
Sbjct: 181 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL 212
>gi|156231349 fumarylacetoacetate hydrolase domain containing 2A
[Homo sapiens]
Length = 314
Score = 145 bits (367), Expect = 2e-35
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 10/201 (4%)
Query: 20 IVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMG 79
+VCVG NY DH +E V EP++F K +++ +++P ++ + E+EL VV+G
Sbjct: 108 VVCVGMNYVDHCKEQNVPVPKEPIIFSKFASSIVGPYDEVVLPPQSQEVDWEVELAVVIG 167
Query: 80 KRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVS-AFVPKE 138
K+ + + AM +V G+ + D++ARD Q ++ G W L K+F CP+ A V K+
Sbjct: 168 KKGKHIKATDAMAHVAGFTVAHDVSARDWQ--MRRNGKQWLLGKTFDTFCPLGPALVTKD 225
Query: 139 KIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVG- 197
+ DPH LK+ +VNGE+ Q G T+ M+F +I++VS+ +T GD+ILTGTP GVG
Sbjct: 226 SVADPHNLKICCRVNGEVVQSGNTNQMVFKTEDLIAWVSQFVTFYPGDVILTGTPPGVGV 285
Query: 198 ----PV--KENDEIEAGIHGL 212
PV K+ DE++ I L
Sbjct: 286 FRKPPVFLKKGDEVQCEIEEL 306
>gi|40786394 fumarylacetoacetate hydrolase domain containing 2B
[Homo sapiens]
Length = 314
Score = 144 bits (362), Expect = 9e-35
Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 10/205 (4%)
Query: 16 WGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELG 75
W +VCVG NY DH +E V EP++F K +++ +++P ++ + E+EL
Sbjct: 104 WPDKVVCVGMNYVDHCKEQNVPVPKEPIIFSKFASSIVGPYDEVVLPPQSQEVDWEVELA 163
Query: 76 VVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVS-AF 134
VV+GK+ + + AM +V G+ + D++ARD ++ G W L K+F CP+ A
Sbjct: 164 VVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWLT--RRNGKQWLLGKTFDTFCPLGPAL 221
Query: 135 VPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPK 194
V K+ + DPH LK+ +VNGE+ Q T+ M+F +I++VS+ +T GD+ILTGTP
Sbjct: 222 VTKDSVADPHNLKICCRVNGEVVQSSNTNQMVFKTEDLIAWVSQFVTFYPGDVILTGTPP 281
Query: 195 GVG-----PV--KENDEIEAGIHGL 212
GVG PV K+ DE++ I L
Sbjct: 282 GVGVFRKPPVFLKKGDEVQCEIEEL 306
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 179 IITLEEGDIILTGTPK-GVGPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELP 237
+++LE ++L T G G EN E GLTL P+LECSS ITAHCSL L
Sbjct: 558 VVSLEHETLVLVVTSTFGNGDPPENGE----------GLTLWPRLECSSTITAHCSLNLL 607
Query: 238 GSSNPPSAS 246
SSNPP+++
Sbjct: 608 DSSNPPTST 616
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 50.8 bits (120), Expect = 1e-06
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 15/74 (20%)
Query: 175 YVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHG--LRQGLTLSPKLECSSAITAHC 232
Y+SK++ L + D++L D++ + LRQ L LSPKLECS + AHC
Sbjct: 106 YLSKVLELRKSDVVL-------------DKVGLALFFFFLRQNLALSPKLECSGVVLAHC 152
Query: 233 SLELPGSSNPPSAS 246
+L L GSS P+++
Sbjct: 153 NLHLLGSSYSPASA 166
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 48.1 bits (113), Expect = 7e-06
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNPPSAS 246
RQ LTLSP+LEC I A+CSL+L GSS+PP+++
Sbjct: 397 RQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSA 430
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 47.8 bits (112), Expect = 9e-06
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 10/52 (19%)
Query: 197 GPVKENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSSN-PPSASR 247
GP+ +N ++Q L LSP L CSSAI+AHC+ LPGSS+ P SAS+
Sbjct: 1090 GPISKN---------IKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQ 1132
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 45.1 bits (105), Expect = 6e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 218 LSPKLECSSAITAHCSLELPGSSNPPSAS 246
LSP+L+CS I+AHC+L LPGSSN P+++
Sbjct: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 45.1 bits (105), Expect = 6e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNPP 243
+Q LTL P+LECS T +CSL+LP SS+PP
Sbjct: 172 KQDLTLLPRLECSGTNTTYCSLDLPSSSDPP 202
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/32 (65%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Query: 217 TLSPKLECSSAITAHCSLELPGSSNPP-SASR 247
TL KLECS ++A+CSL LPGS++PP SASR
Sbjct: 37 TLLSKLECSGTVSAYCSLNLPGSTDPPTSASR 68
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 43.5 bits (101), Expect = 2e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 201 ENDEIEAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSSNPPSAS 246
E EI+ + +SP+LECS + AHCSL+L SSNPP+++
Sbjct: 423 ELPEIQQTSEETKSCSVMSPRLECSGTVIAHCSLKLLDSSNPPTSA 468
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNPPS-ASR 247
R L LSP+LECS I+AHC+ L GSSN P+ ASR
Sbjct: 135 RWNLALSPRLECSGKISAHCNPHLQGSSNSPAQASR 170
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/30 (70%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 219 SPKLECSSAITAHCSLELPGSSN-PPSASR 247
SP+LECS I+ HC+L LPGSSN P SASR
Sbjct: 797 SPRLECSGTISPHCNLLLPGSSNSPASASR 826
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 42.4 bits (98), Expect = 4e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSN 241
R LTL P+ ECS A++AHC+L LPGSS+
Sbjct: 106 RWSLTLLPRPECSGAVSAHCNLHLPGSSD 134
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 42.0 bits (97), Expect = 5e-04
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 214 QGLTLSPKLECSSAITAHCSLELPGSS-NPPSASR 247
Q L LSPKLECS I AH +L L GSS +P SASR
Sbjct: 456 QSLALSPKLECSGTILAHSNLRLLGSSDSPASASR 490
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 42.0 bits (97), Expect = 5e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 221 KLECSSAITAHCSLELPGSSNPPSAS 246
+LECS AI+AHCSL LPGSS+ P+++
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASA 33
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 206 EAGIHGLRQGLTLSPKLECSSAITAHCSLELPGSSNPPSAS 246
++ I ++ L LSP+LE + I+AHC+L L GSSN P+++
Sbjct: 49 QSQIQEFKESLALSPRLERNGMISAHCNLCLTGSSNSPASA 89
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 40.0 bits (92), Expect = 0.002
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 219 SPKLECSSAITAHCSLELPGSSN 241
SP+LECS AI+AHCSL LP SS+
Sbjct: 6 SPRLECSGAISAHCSLHLPDSSD 28
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 221 KLECSSAITAHCSLELPGSSNPPSAS 246
+LEC+ I+AHC+L LPGSS+ P++S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASS 74
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 221 KLECSSAITAHCSLELPGSSNPPSAS 246
+LEC+ I+AHC+L LPGSS+ P++S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASS 74
>gi|239757631 PREDICTED: hypothetical protein XP_002345506 [Homo
sapiens]
Length = 127
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNP 242
R GLTLS +LEC AITA S +L GS NP
Sbjct: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNP 90
>gi|239752121 PREDICTED: hypothetical protein XP_002348120 [Homo
sapiens]
Length = 127
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNP 242
R GLTLS +LEC AITA S +L GS NP
Sbjct: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNP 90
>gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo
sapiens]
Length = 127
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNP 242
R GLTLS +LEC AITA S +L GS NP
Sbjct: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNP 90
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 38.1 bits (87), Expect = 0.007
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 214 QGLTLSPKLECSSAITAHCSLELPGSSNPPSA 245
+ L +SP+LEC+ AI+AHC L L SS+ P++
Sbjct: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTS 102
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 37.0 bits (84), Expect = 0.016
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 220 PKLECSSAITAHCSLELPGSSNPPSAS 246
P+LECS AI A C+L+ GSS+PP+++
Sbjct: 210 PRLECSGAIMARCNLDHLGSSDPPTSA 236
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 36.2 bits (82), Expect = 0.027
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 221 KLECSSAITAHCSLELPGSSNPPSAS 246
+LECS I AHC+L LPGS + P+++
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASA 456
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 36.2 bits (82), Expect = 0.027
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 214 QGLTLSPKLECSSAITAHCSLELPGSSNPPSAS 246
+GL L P+LE S I+A C+L L GSS+ P+++
Sbjct: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASA 38
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 36.2 bits (82), Expect = 0.027
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 212 LRQGLTLSPKLECSSAITAHCSLELPGSS-NPPSASR 247
LR L LSP+LE S I+AHC+L L SS + SASR
Sbjct: 22 LRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASASR 58
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,416,073
Number of Sequences: 37866
Number of extensions: 484478
Number of successful extensions: 1103
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 56
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.