Search of human proteins with 64762484

Search of human proteins with 64762484

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2
[Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2 ...   580   e-166
gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1 ...   566   e-162
gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]        61   1e-09
gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]                  49   4e-06
gi|31542699 MPN domain containing isoform 1 [Homo sapiens]             46   3e-05
gi|229577180 MPN domain containing isoform 2 [Homo sapiens]            42   6e-04
gi|148227842 Myb-like, SWIRM and MPN domains 1 [Homo sapiens]          40   0.002
gi|47132534 STAM binding protein [Homo sapiens]                        36   0.046
gi|42519912 STAM binding protein [Homo sapiens]                        36   0.046
gi|5453545 STAM binding protein [Homo sapiens]                         36   0.046
gi|33147080 STAM binding protein-like 1 [Homo sapiens]                 35   0.078
gi|4502395 beclin 1 [Homo sapiens]                                     34   0.13 
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]    33   0.23 
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]    33   0.23 
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    32   0.50 
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    32   0.50 
gi|119120918 coiled-coil domain containing 64 [Homo sapiens]           32   0.86 
gi|71274152 hypothetical protein LOC388939 [Homo sapiens]              31   1.1  
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    31   1.5  
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   31   1.5  
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   31   1.5  
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    31   1.5  
gi|5032283 dystrophin Dp427m isoform [Homo sapiens]                    31   1.5  
gi|28933465 syntaxin 12 [Homo sapiens]                                 31   1.5  
gi|110626177 zinc finger protein 699 [Homo sapiens]                    30   1.9  
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]     30   2.5  
gi|42794779 myosin 18A isoform b [Homo sapiens]                        30   2.5  
gi|28416946 myosin 18A isoform a [Homo sapiens]                        30   2.5  
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          30   2.5  
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          30   2.5  

>gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2
           [Homo sapiens]
          Length = 291

 Score =  580 bits (1495), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60
           MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
Sbjct: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60

Query: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120
           TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
Sbjct: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120

Query: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180
           YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
Sbjct: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180

Query: 181 SSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNG 240
           SSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNG
Sbjct: 181 SSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNG 240

Query: 241 SVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSLE 291
           SVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSLE
Sbjct: 241 SVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSLE 291


>gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1
           [Homo sapiens]
          Length = 316

 Score =  566 bits (1459), Expect = e-162
 Identities = 291/316 (92%), Positives = 291/316 (92%), Gaps = 25/316 (7%)

Query: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60
           MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
Sbjct: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60

Query: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120
           TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
Sbjct: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120

Query: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180
           YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
Sbjct: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180

Query: 181 SSE-------------------------YERIEIPIHIVPHVTIGKVCLESAVELPKILC 215
           SSE                         YERIEIPIHIVPHVTIGKVCLESAVELPKILC
Sbjct: 181 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC 240

Query: 216 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE 275
           QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
Sbjct: 241 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE 300

Query: 276 LQQEKEELMQELSSLE 291
           LQQEKEELMQELSSLE
Sbjct: 301 LQQEKEELMQELSSLE 316


>gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]
          Length = 310

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 50/182 (27%)

Query: 6   VQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEK 65
           V   + V++ S A L  L H  +    EVMGL +GE  DD        YT          
Sbjct: 25  VDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDD--------YT---------- 66

Query: 66  VDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAER---------LAELTGRPMR 116
              VR++ + ++                P+  +  S EA           + + TGRP  
Sbjct: 67  ---VRVIDVFAM----------------PQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 107

Query: 117 VVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSI 176
           VVGWYHSHP    W S VD+ TQ  ++ + +  V ++    ++   +  G+V+   F+ I
Sbjct: 108 VVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVV----VDPIQSVKGKVVIDAFRLI 163

Query: 177 QA 178
            A
Sbjct: 164 NA 165


>gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]
          Length = 334

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 27/136 (19%)

Query: 18  AFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSV 77
           A L  + HA S    EVMGL +G                        KVD   ++ + S 
Sbjct: 61  ALLKMVMHARSGGNLEVMGLMLG------------------------KVDGETMIIMDSF 96

Query: 78  IILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVR 137
            +     + +   + +  +  AA  E    A+  GR    +GWYHSHP    W S +DV 
Sbjct: 97  ALPVEGTETRVNAQAAAYEYMAAYIEN---AKQVGRLENAIGWYHSHPGYGCWLSGIDVS 153

Query: 138 TQAMYQMMDQGFVGLI 153
           TQ + Q   + FV ++
Sbjct: 154 TQMLNQQFQEPFVAVV 169


>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
          Length = 471

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)

Query: 98  SAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQG 148
           +AA+ E E    L  R + +VGWYHSHPH    PS  D+  Q  YQ+  QG
Sbjct: 325 TAAAIEEEIYQSLFLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQG 375


>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
          Length = 451

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 113 RPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQG 148
           R + +VGWYHSHPH    PS  D+  Q  YQ+  QG
Sbjct: 290 RGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQG 325


>gi|148227842 Myb-like, SWIRM and MPN domains 1 [Homo sapiens]
          Length = 828

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQ-MMDQG---FVGLIFS 155
           L  R   V+GWYHSHP     PS  D+ TQA YQ    +G   F+G+I S
Sbjct: 644 LAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVS 693


>gi|47132534 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 155
           +GW H+HP  T + S VD+ T   YQMM    V ++ S
Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 368


>gi|42519912 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 155
           +GW H+HP  T + S VD+ T   YQMM    V ++ S
Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 368


>gi|5453545 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 155
           +GW H+HP  T + S VD+ T   YQMM    V ++ S
Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 368


>gi|33147080 STAM binding protein-like 1 [Homo sapiens]
          Length = 436

 Score = 35.0 bits (79), Expect = 0.078
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQ 177
           +GW H+HP  T + S VD+ T   YQ+M    + ++  C  + K+T   R+       + 
Sbjct: 343 LGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIV--CSPKHKDTGIFRLTNAGMLEVS 400

Query: 178 AQKSSEY 184
           A K   +
Sbjct: 401 ACKKKGF 407


>gi|4502395 beclin 1 [Homo sapiens]
          Length = 450

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 214 LCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHL 273
           LC+E  D       L  LD+   +      T+N C         L Q  ED  EQ Q  L
Sbjct: 136 LCEECTDTL-----LDQLDTQLNV------TENECQNYKRCLEILEQMNEDDSEQLQMEL 184

Query: 274 QELQQEKEELMQELSSLE 291
           +EL  E+E L+QEL  +E
Sbjct: 185 KELALEEERLIQELEDVE 202


>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
          Length = 971

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 174 QSIQAQKSSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDS 233
           ++I A K  E  +++   H +       +  E +    ++  Q E+D    +  L  L  
Sbjct: 497 ETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKD 556

Query: 234 VTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQ----QEKEELMQELSS 289
             K      + K +   ++ +S  L Q LE +L Q+Q  LQ+LQ    QE++ L QEL  
Sbjct: 557 REKNAARDSWQKKVEDLLNQIS-LLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEE 615

Query: 290 LE 291
           LE
Sbjct: 616 LE 617


>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
          Length = 1140

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 174 QSIQAQKSSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDS 233
           ++I A K  E  +++   H +       +  E +    ++  Q E+D    +  L  L  
Sbjct: 617 ETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKD 676

Query: 234 VTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQ----QEKEELMQELSS 289
             K      + K +   ++ +S  L Q LE +L Q+Q  LQ+LQ    QE++ L QEL  
Sbjct: 677 REKNAARDSWQKKVEDLLNQIS-LLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEE 735

Query: 290 LE 291
           LE
Sbjct: 736 LE 737


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 179  QKSSEYE-RIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKI 237
            Q  SE+E ++ +PI         K+C  SA E  K+L QE  D  + + SL+   +    
Sbjct: 1573 QSVSEFEDKLAVPI---------KIC-SSATETYKVL-QEHMDLCQALESLSSAITAFSA 1621

Query: 238  HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSS 289
                V  ++ C Q +A      + +  R ++ Q  L+ L    + L +ELSS
Sbjct: 1622 SARKVVNRDSCVQEAAALQQQYEDILRRAKERQTALENLLAHWQRLEKELSS 1673


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 179  QKSSEYE-RIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKI 237
            Q  SE+E ++ +PI         K+C  SA E  K+L QE  D  + + SL+   +    
Sbjct: 1566 QSVSEFEDKLAVPI---------KIC-SSATETYKVL-QEHMDLCQALESLSSAITAFSA 1614

Query: 238  HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSS 289
                V  ++ C Q +A      + +  R ++ Q  L+ L    + L +ELSS
Sbjct: 1615 SARKVVNRDSCVQEAAALQQQYEDILRRAKERQTALENLLAHWQRLEKELSS 1666


>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
          Length = 573

 Score = 31.6 bits (70), Expect = 0.86
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 262 LEDRLEQNQQHLQELQQEKEELMQELS 288
           L+D LE+ Q HL+E  +EK   +QELS
Sbjct: 177 LQDELERQQIHLREADREKSRAVQELS 203


>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
          Length = 1288

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 205 ESAVELPKILCQEEQDAYRRIH-SLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLE 263
           E  V+ P+ L +  Q AY  +H SL+  +++  I + +  T+ L         P++ +L 
Sbjct: 171 EGKVDFPEPLVKAHQQAYTYLHSSLSKYEAILCIIHQATQTRELLQ-------PMVSFLL 223

Query: 264 DRLEQNQQHLQELQQEKEELMQEL 287
              E+  Q L E+ ++ E L+QE+
Sbjct: 224 LCFEEISQLLGEISKDGEVLLQEV 247



 Score = 29.3 bits (64), Expect = 4.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 93  SPEQLSAASTEAERLAELTGRPMRVVGWYHSHP 125
           SPE      ++AE+   L  +P + + W+HS P
Sbjct: 933 SPEVKGGTWSQAEKATSLYRQPRKAIAWHHSGP 965


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 204 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 260
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 478 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 537

Query: 261 WLEDRLEQNQQHLQELQQEKEE 282
           W EDR    Q  L + Q+  EE
Sbjct: 538 WTEDRWVLLQDILLKWQRLTEE 559


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 204 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 260
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 363 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 422

Query: 261 WLEDRLEQNQQHLQELQQEKEE 282
           W EDR    Q  L + Q+  EE
Sbjct: 423 WTEDRWVLLQDILLKWQRLTEE 444


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 204 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 260
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 482 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 541

Query: 261 WLEDRLEQNQQHLQELQQEKEE 282
           W EDR    Q  L + Q+  EE
Sbjct: 542 WTEDRWVLLQDILLKWQRLTEE 563


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 204 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 260
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 363 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 422

Query: 261 WLEDRLEQNQQHLQELQQEKEE 282
           W EDR    Q  L + Q+  EE
Sbjct: 423 WTEDRWVLLQDILLKWQRLTEE 444


>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 204 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 260
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 486 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 545

Query: 261 WLEDRLEQNQQHLQELQQEKEE 282
           W EDR    Q  L + Q+  EE
Sbjct: 546 WTEDRWVLLQDILLKWQRLTEE 567


>gi|28933465 syntaxin 12 [Homo sapiens]
          Length = 276

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 233 SVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSL 290
           ++ +I   +   KNL SQ+          L++ L+Q Q    +L +E  EL++EL SL
Sbjct: 32  NIQRISQATAQIKNLMSQLGTKQDS--SKLQENLQQLQHSTNQLAKETNELLKELGSL 87


>gi|110626177 zinc finger protein 699 [Homo sapiens]
          Length = 642

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 132 SHVDVRTQAM-YQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERIEIP 190
           SH+   T +  YQ  + G      +CF +   T T    Y C +  +A   S + R  + 
Sbjct: 212 SHIRSHTGSKPYQCKECGKAFHFLACFKKHMKTPTEEKPYECKECTKAFSCSSFFRAHMK 271

Query: 191 IHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHS 227
           IH      IGK   E         C      ++RIHS
Sbjct: 272 IH------IGKTNYECKECGKGFSCSSSLTEHKRIHS 302


>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
          Length = 1960

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 262 LEDRLEQNQQHLQELQQEKEELMQELSSLE 291
           LE R+E+ ++  Q LQ EK+++ Q +  LE
Sbjct: 920 LEARVEEEEERCQHLQAEKKKMQQNIQELE 949


>gi|42794779 myosin 18A isoform b [Homo sapiens]
          Length = 2039

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 17/122 (13%)

Query: 170  YTCFQSIQAQKSSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLT 229
            +TC  +++A+K+ E E  ++ + I   +   K  LE   +L ++  ++ +   R      
Sbjct: 1697 FTCAAAVKARKAMEVEIEDLHLQI-DDIAKAKTALEE--QLSRLQREKNEIQNRLEEDQE 1753

Query: 230  HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSS 289
             ++ + K H  +V         +  S  L Q     +   Q  L+E  +EK+EL ++L +
Sbjct: 1754 DMNELMKKHKAAV---------AQASRDLAQ-----INDLQAQLEEANKEKQELQEKLQA 1799

Query: 290  LE 291
            L+
Sbjct: 1800 LQ 1801


>gi|28416946 myosin 18A isoform a [Homo sapiens]
          Length = 2054

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 17/122 (13%)

Query: 170  YTCFQSIQAQKSSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLT 229
            +TC  +++A+K+ E E  ++ + I   +   K  LE   +L ++  ++ +   R      
Sbjct: 1697 FTCAAAVKARKAMEVEIEDLHLQI-DDIAKAKTALEE--QLSRLQREKNEIQNRLEEDQE 1753

Query: 230  HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSS 289
             ++ + K H  +V         +  S  L Q     +   Q  L+E  +EK+EL ++L +
Sbjct: 1754 DMNELMKKHKAAV---------AQASRDLAQ-----INDLQAQLEEANKEKQELQEKLQA 1799

Query: 290  LE 291
            L+
Sbjct: 1800 LQ 1801


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 89  RVEIS-PEQLSAASTEAERLAELTGRPM------RVVGWYHSHPHITVWPSHVDVRTQ 139
           R E+S P++L+A    AER+A LT  P+       V   +H H HI    SH+ +  Q
Sbjct: 833 RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHI---HSHLHLHQQ 887


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 89   RVEIS-PEQLSAASTEAERLAELTGRPM------RVVGWYHSHPHITVWPSHVDVRTQ 139
            R E+S P++L+A    AER+A LT  P+       V   +H H HI    SH+ +  Q
Sbjct: 1387 RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHI---HSHLHLHQQ 1441


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,147,325
Number of Sequences: 37866
Number of extensions: 424828
Number of successful extensions: 3080
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2939
Number of HSP's gapped (non-prelim): 173
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.