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Search of human proteins with 62988336
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62988336 hypothetical protein LOC441168 [Homo sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62988336 hypothetical protein LOC441168 [Homo sapiens] 631 0.0
gi|24308454 hypothetical protein LOC254228 [Homo sapiens] 231 6e-61
gi|21361521 calcium homeostasis modulator 2 [Homo sapiens] 139 3e-33
gi|194440685 calcium homeostasis modulator 1 [Homo sapiens] 111 1e-24
gi|193211395 calcium homeostasis modulator 3 [Homo sapiens] 102 3e-22
gi|23308563 hypothetical protein LOC221301 [Homo sapiens] 58 1e-08
gi|52353302 transmembrane protein 198 [Homo sapiens] 36 0.039
gi|169184330 PREDICTED: novel protein similar to contactin assoc... 31 1.3
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens] 30 2.1
gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens] 30 2.1
gi|47827222 solute carrier family 35, member E4 [Homo sapiens] 30 2.1
gi|239757512 PREDICTED: chromosome 20 open reading frame 123 [Ho... 30 3.6
gi|239752028 PREDICTED: hypothetical protein LOC128506 [Homo sap... 30 3.6
gi|239746512 PREDICTED: hypothetical protein LOC128506 [Homo sap... 30 3.6
gi|225637556 hypothetical protein LOC128506 [Homo sapiens] 30 3.6
gi|189217881 carcinoembryonic antigen-related cell adhesion mole... 30 3.6
gi|45267817 carcinoembryonic antigen-related cell adhesion molec... 30 3.6
gi|39777594 solute carrier organic anion transporter family memb... 29 4.8
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2... 29 6.2
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1... 29 6.2
gi|66529005 ATP-binding cassette, sub-family C, member 5 isoform... 29 6.2
gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens] 28 8.1
gi|52485941 integrin, alpha 9 precursor [Homo sapiens] 28 8.1
>gi|62988336 hypothetical protein LOC441168 [Homo sapiens]
Length = 315
Score = 631 bits (1628), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA
Sbjct: 1 MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
Query: 61 LALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLG 120
LALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLG
Sbjct: 61 LALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLG 120
Query: 121 GAFYECAATGSAAFAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWI 180
GAFYECAATGSAAFAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWI
Sbjct: 121 GAFYECAATGSAAFAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWI 180
Query: 181 LIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKENIKCF 240
LIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKENIKCF
Sbjct: 181 LIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKENIKCF 240
Query: 241 FEGSHPKEYNTPSMKEWQQISSLYTFNPKGQYYSMLHKYVNRKEKTHSIRSTEGDTVIPV 300
FEGSHPKEYNTPSMKEWQQISSLYTFNPKGQYYSMLHKYVNRKEKTHSIRSTEGDTVIPV
Sbjct: 241 FEGSHPKEYNTPSMKEWQQISSLYTFNPKGQYYSMLHKYVNRKEKTHSIRSTEGDTVIPV 300
Query: 301 LGFVDSSGINSTPEL 315
LGFVDSSGINSTPEL
Sbjct: 301 LGFVDSSGINSTPEL 315
>gi|24308454 hypothetical protein LOC254228 [Homo sapiens]
Length = 309
Score = 231 bits (589), Expect = 6e-61
Identities = 116/287 (40%), Positives = 173/287 (60%), Gaps = 7/287 (2%)
Query: 1 MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
M+ F+ +L + + +GY + LLT G ER+FS VAF+CPCS N+ YGLVFL PA
Sbjct: 1 MDAFQGILKFFLNQKTVIGYSFMALLTVGSERLFSVVAFKCPCSTE-NMTYGLVFLFAPA 59
Query: 61 LALFLLGYVLSARTWRLLTGCCSSARASC--GSALRGSLVCTQISAAAALAPLTWVAVAL 118
L +LG+ L+ R+WRL TGCC + R G + R V QI+ ++ +AP+ W++VAL
Sbjct: 60 WVLLILGFFLNNRSWRLFTGCCVNPRKIFPRGHSCRFFYVLGQITLSSLVAPVMWLSVAL 119
Query: 119 LGGAFYECAATG--SAAFAQRLCLGRNRSCAAELPLVPCNQAKASDV--QDLLKDLKAQS 174
L G FYECA +G S+ + +C G+ + C EL V C + ++L L+AQS
Sbjct: 120 LNGTFYECAMSGTRSSGLLELICKGKPKECWEELHKVSCGKTSMLPTVNEELKLSLQAQS 179
Query: 175 QVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAK 234
Q+LGW LI L+ T RC S VS+LQL FWK Y ++E++ L++ ++A +L++
Sbjct: 180 QILGWCLICSASFFSLLTTCYARCRSKVSYLQLSFWKTYAQKEKEQLENTFLDYANKLSE 239
Query: 235 ENIKCFFEGSHPKEYNTPSMKEWQQISSLYTFNPKGQYYSMLHKYVN 281
N+KCFFE P + P+ W+ S L++F+ Q+YS LH+ V+
Sbjct: 240 RNLKCFFENKRPDPFPMPTFAAWEAASELHSFHQSQQHYSTLHRVVD 286
>gi|21361521 calcium homeostasis modulator 2 [Homo sapiens]
Length = 323
Score = 139 bits (351), Expect = 3e-33
Identities = 99/299 (33%), Positives = 146/299 (48%), Gaps = 24/299 (8%)
Query: 2 EKFRAVLDLHVKHHSALGY-GLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
E FR L L K + + GLV L T G + +FS VAF CPCS A N YGL + VPA
Sbjct: 7 ENFR-FLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPA 65
Query: 61 LALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLG 120
L LF++G +L+ TW L+ C +C SA L+ + I AA+AP+TW ++LL
Sbjct: 66 LVLFIIGIILNNHTWNLVAECQHRRTKNC-SAAPTFLLLSSILGRAAVAPVTWSVISLLR 124
Query: 121 GAFYECAAT---GSAAFAQRLCLGRNRSCAAELPLVPC--NQAKASDV-QDLLKDLKAQS 174
G Y CA + ++ R + L PC N SD +++ + L+ +S
Sbjct: 125 GEAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRLRYES 184
Query: 175 QVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAK 234
Q+ GW+LI VV I++ + + SP+S+ Q +W Y E Q+ + A H+ LA
Sbjct: 185 QLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAA 244
Query: 235 ENIKCFFE------------GSHPKEYNTPSMKEWQQISSLYTF--NPKGQYYSMLHKY 279
N++ FF + P E T +W I+ +Y + N YS LHK+
Sbjct: 245 NNVRRFFGFVALNKDDEELIANFPVE-GTQPRPQWNAITGVYLYRENQGLPLYSRLHKW 302
>gi|194440685 calcium homeostasis modulator 1 [Homo sapiens]
Length = 346
Score = 111 bits (277), Expect = 1e-24
Identities = 79/261 (30%), Positives = 123/261 (47%), Gaps = 29/261 (11%)
Query: 1 MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
M+KFR + + + G+ ++ +++SA F CPC +N Y LL P
Sbjct: 2 MDKFRMIFQFLQSNQESFMNGICGIMALASAQMYSAFDFNCPCLPGYNAAYSAGILLAPP 61
Query: 61 LALFLLGYVLS------ARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWV 114
L LFLLG V++ A W+ G RA + LR + C+ ++ A +AP+ WV
Sbjct: 62 LVLFLLGLVMNNNVSMLAEEWKRPLG----RRAKDPAVLR-YMFCS-MAQRALIAPVVWV 115
Query: 115 AVALLGGAFYECAATGSAAFAQRLCLGRNRSCAAELPL---------VPCNQAKASDV-- 163
AV LL G + CA + + LG N S A LP VPC + D
Sbjct: 116 AVTLLDGKCFLCAFCTAVPVS---ALG-NGSLAPGLPAPELARLLARVPCPEIYDGDWLL 171
Query: 164 --QDLLKDLKAQSQVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQIL 221
+ ++ L+ SQ LGW + + ++ + SV C + +FL+ K+W Y++ E+++
Sbjct: 172 AREVAVRYLRCISQALGWSFVLLTTLLAFVVRSVRPCFTQAAFLKSKYWSHYIDIERKLF 231
Query: 222 KSKATEHATELAKENIKCFFE 242
TEHA AK I+ FFE
Sbjct: 232 DETCTEHAKAFAKVCIQQFFE 252
>gi|193211395 calcium homeostasis modulator 3 [Homo sapiens]
Length = 344
Score = 102 bits (255), Expect = 3e-22
Identities = 74/255 (29%), Positives = 115/255 (45%), Gaps = 22/255 (8%)
Query: 1 MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
M+KFR + ++ G+ LL A +++S+ F CPC +N YGL LL P
Sbjct: 1 MDKFRMLFQHFQSSSESVMNGICLLLAAVTVKLYSSFDFNCPCLVHYNALYGLGLLLTPP 60
Query: 61 LALFLLGY------VLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWV 114
LALFL G V+ WR G R +R +C+ + A APL W+
Sbjct: 61 LALFLCGLLANRQSVVMVEEWRRPAG----HRRKDPGIIR--YMCSSVLQRALAAPLVWI 114
Query: 115 AVALLGGAFYECAATGSAAFAQRLCLGRNRSCAAELPL--VPCNQAKASDVQD------L 166
+ALL G + CA + S + L +L L VPC + + V+D +
Sbjct: 115 LLALLDGKCFVCAFSSSVDPEKFLDFANMTPSQVQLFLAKVPCKEDEL--VRDSPARKAV 172
Query: 167 LKDLKAQSQVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKAT 226
+ L+ SQ +GW + ++II + + C FLQ ++W Y++ EQ++
Sbjct: 173 SRYLRCLSQAIGWSVTLLLIIAAFLARCLRPCFDQTVFLQRRYWSNYVDLEQKLFDETCC 232
Query: 227 EHATELAKENIKCFF 241
EHA + A + FF
Sbjct: 233 EHARDFAHRCVLHFF 247
>gi|23308563 hypothetical protein LOC221301 [Homo sapiens]
Length = 128
Score = 57.8 bits (138), Expect = 1e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 176 VLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKE 235
+LGWILI + I L+ V +C SP++ LQ +W +L+ E+++ + A +H+ L
Sbjct: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
Query: 236 NIK---CFFEGSHP-KEYNTPSMKEWQQIS 261
IK F GS K PS ++W+ IS
Sbjct: 61 RIKKLFGFIPGSEDVKHIRIPSCQDWKDIS 90
>gi|52353302 transmembrane protein 198 [Homo sapiens]
Length = 360
Score = 36.2 bits (82), Expect = 0.039
Identities = 40/118 (33%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 52 GLVFLLVPALALFLLGYVLSARTWRLLTGCCSSARASCGSA---------------LRGS 96
GLV +LV ++ LFL+G LL G +A A GSA L G
Sbjct: 107 GLVAMLVRSVGLFLVG---------LLLGLLLAAAALLGSAPYYQPGSVWGPLGLLLGGG 157
Query: 97 LVCTQISAAAALAPLTWVAVALLGGAFYECAATGSAAFAQRLCLGR---NRSCAAELP 151
L+C ++ PLT +A A+ G A AT + FA+ L LGR R AA +P
Sbjct: 158 LLCALLTLRWP-RPLTTLATAVTGAAL---IATAADYFAELLLLGRYVVERLRAAPVP 211
>gi|169184330 PREDICTED: novel protein similar to contactin
associated protein-like 3 (CNTNAP3) [Homo sapiens]
Length = 291
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 79 TGCCSSARASCGSALRGSL---VCTQISAAAALAPLTWVAVALLGGAFYECAATGSAA-- 133
TGC S+ R C + L+ +L ++++ +AP+ A AA+GS A
Sbjct: 168 TGCLSAVRFGCAAPLKAALRPSGPSRVTVRGHVAPMARCAAG---------AASGSPARE 218
Query: 134 FAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWILIAVVIIILLIFT 193
A RL G RS + + L+ + S V+G + IAV I ILL T
Sbjct: 219 LAPRLAGGAGRS------------GPVDEGEPLVNADRRDSAVIGGV-IAVEIFILLCIT 265
Query: 194 SV 195
++
Sbjct: 266 AI 267
>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
Length = 1288
Score = 30.4 bits (67), Expect = 2.1
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 27/122 (22%)
Query: 79 TGCCSSARASCGSALRGSLVCT---QISAAAALAPLTWVAVALLGGAFYECAATGSAA-- 133
TGC S+ R + L+ +L + +++ +AP+ A AA+GS A
Sbjct: 1165 TGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAG---------AASGSPARE 1215
Query: 134 FAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWILIAVVIIILLIFT 193
A RL G RS A + + L+ + S V+G + IAVVI ILL T
Sbjct: 1216 LAPRLAGGAGRS------------GPADEGEPLVNADRRDSAVIGGV-IAVVIFILLCIT 1262
Query: 194 SV 195
++
Sbjct: 1263 AI 1264
>gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens]
Length = 218
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 206 QLKFWKIYLEQEQQILKSKATEHATELAKENIKCFFEGSHPKEYNTPSMKEWQQISSLYT 265
+L+ W Y Q++Q+ K+KA A E A N + S P EW++++ L
Sbjct: 142 ELEEW--YARQDEQLQKTKANNRAAEEAFVND---IDESSPGT-------EWERVARLCD 189
Query: 266 FNPK 269
FNPK
Sbjct: 190 FNPK 193
>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
Length = 350
Score = 30.4 bits (67), Expect = 2.1
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 27 TAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPALALFLLGYVLSARTWRLLTGCCSSAR 86
TAG R+++ + C S +NL + L AL + +LG +
Sbjct: 248 TAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNL----------------- 290
Query: 87 ASCGSALRGSLVCTQISAAAALAPLTWVAVAL-LGGAFYECAATGSAAFAQRLCLGR 142
+ G+L+ +++ + L+ L++V +AL L G F A++A R L R
Sbjct: 291 -----TVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWR 342
>gi|239757512 PREDICTED: chromosome 20 open reading frame 123 [Homo
sapiens]
Length = 560
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 87 ASCGSALRGSLVCTQISAAAALAPLTWVAVALL 119
ASCG L L+C ++AAAA W+A LL
Sbjct: 37 ASCGQLLTQLLLCASLAAAAAGLVYHWLASLLL 69
>gi|239752028 PREDICTED: hypothetical protein LOC128506 [Homo
sapiens]
Length = 560
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 87 ASCGSALRGSLVCTQISAAAALAPLTWVAVALL 119
ASCG L L+C ++AAAA W+A LL
Sbjct: 37 ASCGQLLTQLLLCASLAAAAAGLVYHWLASLLL 69
>gi|239746512 PREDICTED: hypothetical protein LOC128506 [Homo
sapiens]
Length = 560
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 87 ASCGSALRGSLVCTQISAAAALAPLTWVAVALL 119
ASCG L L+C ++AAAA W+A LL
Sbjct: 37 ASCGQLLTQLLLCASLAAAAAGLVYHWLASLLL 69
>gi|225637556 hypothetical protein LOC128506 [Homo sapiens]
Length = 566
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 87 ASCGSALRGSLVCTQISAAAALAPLTWVAVALL 119
ASCG L L+C ++AAAA W+A LL
Sbjct: 43 ASCGQLLTQLLLCASLAAAAAGLVYHWLASLLL 75
>gi|189217881 carcinoembryonic antigen-related cell adhesion
molecule 19 isoform 1 [Homo sapiens]
Length = 299
Score = 29.6 bits (65), Expect = 3.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 56 LLVPALALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVA 115
L AL + + Y+L R WR + + R GS S++C+ +S ++ P TW+A
Sbjct: 167 LAAGALLISCIAYLLVTRNWRGQSHRLPAPRGQ-GSL---SILCSAVSPVPSVTPSTWMA 222
>gi|45267817 carcinoembryonic antigen-related cell adhesion molecule
19 isoform 2 [Homo sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 3.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 56 LLVPALALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVA 115
L AL + + Y+L R WR + + R GS S++C+ +S ++ P TW+A
Sbjct: 167 LAAGALLISCIAYLLVTRNWRGQSHRLPAPRGQ-GSL---SILCSAVSPVPSVTPSTWMA 222
>gi|39777594 solute carrier organic anion transporter family member
4A1 [Homo sapiens]
Length = 722
Score = 29.3 bits (64), Expect = 4.8
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 10 LHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPALALFLLGYV 69
L + H A G V ++AG AF PC N P G++F L A FL G
Sbjct: 62 LWAEKHGARGTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFL--CAAAFLQGMT 119
Query: 70 LSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLGGAFYE---- 125
++ ++T S R + + L+ + AA L LT+ V+ GG+ ++
Sbjct: 120 VNGFINTVIT---SLERRYDLHSYQSGLIASSYDIAACLC-LTF--VSYFGGSGHKPRWL 173
Query: 126 -----CAATGSAAFA 135
TGS FA
Sbjct: 174 GWGVLLMGTGSLVFA 188
>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
[Homo sapiens]
Length = 1207
Score = 28.9 bits (63), Expect = 6.2
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 79 TGCCSSARASCGSALRGSLVCT---QISAAAALAPLTWVAVALLGGAFYECAATGSAA-- 133
TGC S+ R + L+ +L + +++ +AP+ A AA+GS A
Sbjct: 1084 TGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAG---------AASGSPARE 1134
Query: 134 FAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWILIAVVIIILLIFT 193
A RL G RS + + L+ + S V+G + IAVVI ILL T
Sbjct: 1135 LAPRLAGGAGRS------------GPVDEGEPLVNADRRDSAVMGGV-IAVVIFILLCIT 1181
Query: 194 SV 195
++
Sbjct: 1182 AI 1183
>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
[Homo sapiens]
Length = 1288
Score = 28.9 bits (63), Expect = 6.2
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 79 TGCCSSARASCGSALRGSLVCT---QISAAAALAPLTWVAVALLGGAFYECAATGSAA-- 133
TGC S+ R + L+ +L + +++ +AP+ A AA+GS A
Sbjct: 1165 TGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAG---------AASGSPARE 1215
Query: 134 FAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWILIAVVIIILLIFT 193
A RL G RS + + L+ + S V+G + IAVVI ILL T
Sbjct: 1216 LAPRLAGGAGRS------------GPVDEGEPLVNADRRDSAVMGGV-IAVVIFILLCIT 1262
Query: 194 SV 195
++
Sbjct: 1263 AI 1264
>gi|66529005 ATP-binding cassette, sub-family C, member 5 isoform 1
[Homo sapiens]
Length = 1437
Score = 28.9 bits (63), Expect = 6.2
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 33/137 (24%)
Query: 177 LGWILIAV-VIIILLIFTSVT----------RCLSPVSFLQLKFWKIYLEQEQQILKSKA 225
LG+ L A ++ +F S+T + LS S +F ++L +E ++K+K
Sbjct: 424 LGFDLTAAQAFTVVTVFNSMTFALKVTPFSVKSLSEASVAVDRFKSLFLMEEVHMIKNKP 483
Query: 226 TEHATELAKENIKCFFEGSHPKEYN----TPSMKEWQQISSLYTFNPKGQYYSMLHKYVN 281
++ +N ++ SH N TP MK+ ++ S
Sbjct: 484 ASPHIKIEMKNATLAWDSSHSSIQNSPKLTPKMKKDKRASR------------------G 525
Query: 282 RKEKTHSIRSTEGDTVI 298
+KEK ++ TE V+
Sbjct: 526 KKEKVRQLQRTEHQAVL 542
>gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]
Length = 297
Score = 28.5 bits (62), Expect = 8.1
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 30 GERIFSAVAFQCPCSAAWNLPYGLVFLLVPALA-------LFLLGYVLSARTWRLLTGCC 82
G+ F A+ Q C +W LP G + V +A LLG ++ T +G
Sbjct: 56 GQPFFDAIFTQLNCQVSWFLPEGSKLVPVARVAEVRGPAHCLLLGERVALNTLARCSGIA 115
Query: 83 SSARASCGSA 92
S+A A+ +A
Sbjct: 116 SAAAAAVEAA 125
>gi|52485941 integrin, alpha 9 precursor [Homo sapiens]
Length = 1035
Score = 28.5 bits (62), Expect = 8.1
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 156 NQAKASDVQDLLKDLKAQSQVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKI 212
N + + V + L +L+ + V+GWI+ +++ +LIF + L + F + ++ +I
Sbjct: 958 NPEEVTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEI 1014
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,510,989
Number of Sequences: 37866
Number of extensions: 468651
Number of successful extensions: 1356
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 29
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.