Guide to the Human Genome
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Name: C20orf123 Sequence: fasta or formatted (560aa) NCBI GI: 239757512
Description:

PREDICTED: chromosome 20 open reading frame 123

Not currently referenced in the text

Other entries for this name:
alt prot {566aa} hypothetical protein LOC128506
alt mRNA {560aa} PREDICTED: hypothetical protein LOC128506
alt mRNA {560aa} PREDICTED: hypothetical protein LOC128506
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         71           5
 C cysteine            2.5         14           1
 D aspartate           3.0         17           1
 E glutamate           3.4         19           2
 F phenylalanine       3.8         21           2
 G glycine             5.9         33           1
 H histidine           3.2         18           1
 I isoleucine          1.4          8           1
 K lysine              1.1          6           1
 L leucine            17.7         99           3
 M methionine          1.1          6           1
 N asparagine          1.8         10           1
 P proline             6.8         38           3
 Q glutamine           5.4         30           2
 R arginine            7.0         39           2
 S serine              6.2         35           2
 T threonine           6.1         34           2
 V valine              6.8         38           2
 W tryptophan          2.0         11           1
 Y tyrosine            2.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: chromosome 20 open reading frame 123 [Ho... 
C20orf123             1.000   PREDICTED: hypothetical protein LOC128506 
C20orf123             1.000   PREDICTED: hypothetical protein LOC128506 
C20orf123             0.982   hypothetical protein LOC128506 
DCST2                 0.026   DC-STAMP domain containing 2 
TM7SF4                0.022   dendritic cell-specific transmembrane protein 
DCST1                 0.014   DC-STAMP domain containing 1 isoform 1 
DCST1                 0.011   DC-STAMP domain containing 1 isoform 2 
LOC100130982          0.007   PREDICTED: hypothetical protein 
LOC100130982          0.007   PREDICTED: hypothetical protein 
LOC100130982          0.007   PREDICTED: hypothetical protein 
TAS1R3                0.006   taste receptor, type 1, member 3 
LOC100130506          0.005   PREDICTED: hypothetical protein 
LOC100288911          0.005   PREDICTED: hypothetical protein XP_002342241 
BMP6                  0.005   bone morphogenetic protein 6 preproprotein 
EP300                 0.005   E1A binding protein p300 
EFHD1                 0.005   EF-hand domain family, member D1 
FAM26F                0.005   hypothetical protein LOC441168 
RBM15B                0.004   RNA binding motif protein 15B 
TTC37                 0.004   tetratricopeptide repeat domain 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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