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Search of human proteins with 62530384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor
[Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor [Hom... 593 e-170
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 79 5e-15
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 73 3e-13
gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo... 64 2e-10
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 63 4e-10
gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 55 6e-08
gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 55 6e-08
gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratas... 55 6e-08
gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein ... 55 6e-08
gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isof... 48 9e-06
gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Hom... 42 5e-04
gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 38 0.010
gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo sap... 33 0.40
gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo sap... 33 0.40
gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom... 32 0.53
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 29 5.8
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 29 5.8
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 29 5.8
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 29 5.8
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 29 5.8
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 29 5.8
gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens] 28 7.6
gi|113429036 PREDICTED: hypothetical protein [Homo sapiens] 28 7.6
gi|169214602 PREDICTED: similar to hCG2041260 [Homo sapiens] 28 7.6
gi|89886352 hypothetical protein LOC339229 [Homo sapiens] 28 7.6
gi|7705897 kynurenine aminotransferase II [Homo sapiens] 28 10.0
gi|33469970 kynurenine aminotransferase II [Homo sapiens] 28 10.0
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 28 10.0
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 28 10.0
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 28 10.0
>gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor [Homo
sapiens]
Length = 302
Score = 593 bits (1528), Expect = e-170
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MALVASVRVPARVLLRAGARLPGAALGRTERAAGGGDGARRFGSQRVLVEPDAGAGVAVM 60
MALVASVRVPARVLLRAGARLPGAALGRTERAAGGGDGARRFGSQRVLVEPDAGAGVAVM
Sbjct: 1 MALVASVRVPARVLLRAGARLPGAALGRTERAAGGGDGARRFGSQRVLVEPDAGAGVAVM 60
Query: 61 KFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAH 120
KFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAH
Sbjct: 61 KFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAH 120
Query: 121 YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQ 180
YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQ
Sbjct: 121 YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQ 180
Query: 181 LGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAI 240
LGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAI
Sbjct: 181 LGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAI 240
Query: 241 AQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 300
AQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE
Sbjct: 241 AQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 300
Query: 301 KG 302
KG
Sbjct: 301 KG 302
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 79.0 bits (193), Expect = 5e-15
Identities = 79/308 (25%), Positives = 131/308 (42%), Gaps = 25/308 (8%)
Query: 18 GARLPGAALGRTER----------AAGGGDGARRFGSQ-------RVLVEPDAGAGVAVM 60
G RLPG+ GR AAGG R + S+ RV + G+ V+
Sbjct: 33 GLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTEDELRVRHLEEENRGIVVL 92
Query: 61 KFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPA 119
NSLS + L +++ L++DK R +I+ S+ PG+F AG DL E S +
Sbjct: 93 GINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS 152
Query: 120 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNET 179
+ ++ + + + ++AI+G GG +AL CD R+ A + + +GL ET
Sbjct: 153 EVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK--MGLVET 210
Query: 180 QLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQ----VQST 235
+L II L IG A+ + + EA VG++ V+ + Q
Sbjct: 211 KLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRK 270
Query: 236 ALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFI-SKDSIQKSLQMYL 294
AL +++ A ++ K + + LVT + + I +KD ++ L
Sbjct: 271 ALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKE 330
Query: 295 ERLKEEKG 302
+R KG
Sbjct: 331 KRPPRYKG 338
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 73.2 bits (178), Expect = 3e-13
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 3/174 (1%)
Query: 57 VAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
VAV++ +P VN+LS E +E + ++ R +L S +PG F AG D+ +
Sbjct: 49 VAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLA 108
Query: 115 G-RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 173
++ + Q + +L +S +V+AING+C GG VA++C YRI + +
Sbjct: 109 ACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTV 168
Query: 174 IGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 227
+G E LG + L +G AA + G A ++G+VDQ+V
Sbjct: 169 LGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLV 222
>gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo
sapiens]
Length = 303
Score = 63.5 bits (153), Expect = 2e-10
Identities = 74/310 (23%), Positives = 127/310 (40%), Gaps = 27/310 (8%)
Query: 1 MALVASVRV---PARVLLRAG--ARLPGAALGRTERAAGGGDGARRFGSQRVLVEPDAGA 55
MA VA +R + LR G A+LP R AG + R S R L
Sbjct: 1 MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQL------D 54
Query: 56 GVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
G+ + NP N+LSL L L + + + +I++++ P VFS+G DL E+
Sbjct: 55 GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLKELT 113
Query: 115 GRSPAHY-AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILAD----- 168
Y A ++ ++ + + + +++ +NG A GC + +CD + +D
Sbjct: 114 EEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA 173
Query: 169 NPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVP 228
P +GL + G+ L + + A L G EAL G++ +VVP
Sbjct: 174 TPGVNVGLFCSTPGV--------ALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVP 225
Query: 229 EEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQK 288
E ++Q + + ++ L KA K L T Q V ++ Q+
Sbjct: 226 EAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQE 285
Query: 289 SLQMYLERLK 298
+ +L++ K
Sbjct: 286 GITAFLQKRK 295
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 62.8 bits (151), Expect = 4e-10
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 57 VAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR 116
+A+++ +NPPVN++S L ++ L+K D + + +++ G FSAG D+ G
Sbjct: 11 LALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICG-AEGKFSAGADIR---GF 66
Query: 117 SPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGL 176
S G + + + ++ +V+AI G GG +AL C YRI + +GL
Sbjct: 67 SAPRTFGL--TLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQ--VGL 122
Query: 177 NETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 233
E LG++ L G AA + G EAL++GI+D+VV + V+
Sbjct: 123 PEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVE 179
>gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform
1 [Homo sapiens]
Length = 301
Score = 55.5 bits (132), Expect = 6e-08
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 56 GVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
G+ ++ NP +N+ S + +L+ + +LEN +G+I+ + FS+G DL +
Sbjct: 57 GIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 115
Query: 115 GR-SPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 173
+P +Q R + L+ V+ + G GG CD+R++ P
Sbjct: 116 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLM--TPESK 173
Query: 174 IGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 233
I ++GII + L IG R A + L L AL +G+V++V+ + +
Sbjct: 174 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL-QSSDE 232
Query: 234 STALSAIAQWM 244
+ +L +W+
Sbjct: 233 TKSLEEAQEWL 243
>gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform
5 [Homo sapiens]
Length = 307
Score = 55.5 bits (132), Expect = 6e-08
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 56 GVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
G+ ++ NP +N+ S + +L+ + +LEN +G+I+ + FS+G DL +
Sbjct: 63 GIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 121
Query: 115 GR-SPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 173
+P +Q R + L+ V+ + G GG CD+R++ P
Sbjct: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLM--TPESK 179
Query: 174 IGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 233
I ++GII + L IG R A + L L AL +G+V++V+ + +
Sbjct: 180 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL-QSSDE 238
Query: 234 STALSAIAQWM 244
+ +L +W+
Sbjct: 239 TKSLEEAQEWL 249
>gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratase 1
precursor [Homo sapiens]
Length = 290
Score = 55.5 bits (132), Expect = 6e-08
Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 6/243 (2%)
Query: 57 VAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG 115
V +++ P +N+L + EL +L+ E D + ++LT F+AG D+ EM
Sbjct: 47 VGLIQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKA-FAAGADIKEM-- 103
Query: 116 RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIG 175
++ + Y + W L Q +++A+NG GGC +A+ CD + ++
Sbjct: 104 QNLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQF--A 161
Query: 176 LNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQST 235
E +G I L +G A + G +A Q G+V ++ P E +
Sbjct: 162 QPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEE 221
Query: 236 ALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLE 295
A+ + + + K + A L + + F S + D ++ + ++E
Sbjct: 222 AIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVE 281
Query: 296 RLK 298
+ K
Sbjct: 282 KRK 284
>gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein
[Homo sapiens]
Length = 328
Score = 55.5 bits (132), Expect = 6e-08
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 68 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC-------GRSPAH 120
N+++ F E+V K+ D R V++ S +F+AG+DL +M G A
Sbjct: 79 NAMNKVFWREMVECFNKISRDADCRAVVI-SGAGKMFTAGIDLMDMASDILQPKGDDVAR 137
Query: 121 YAGYWKAV----QELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGL 176
+ Y + + QE + + + +++A++G C GG + CD R A + + +
Sbjct: 138 ISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQV-- 195
Query: 177 NETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPA-EALQVGIVDQVVPEEQVQST 235
E +G+ A L IG+++ L A EAL G+V +V P+++V
Sbjct: 196 KEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLD 255
Query: 236 ALSAIA 241
A A+A
Sbjct: 256 AALALA 261
>gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isoform
3 [Homo sapiens]
Length = 226
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 5/171 (2%)
Query: 75 LTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR-SPAHYAGYWKAVQELWL 133
+ +L+ + +LEN +G+I+ + FS+G DL + +P +Q
Sbjct: 2 MLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVKSLGTPEDGMAVCMFMQNTLT 60
Query: 134 RLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTL 193
R + L+ V+ + G GG CD+R++ P I ++GII + L
Sbjct: 61 RFMRLPLISVALVQGWALGGGAEFTTACDFRLM--TPESKIRFVHKEMGIIPSWGGTTRL 118
Query: 194 ENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWM 244
IG R A + L L AL +G+V++V+ + ++ +L +W+
Sbjct: 119 VEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL-QSSDETKSLEEAQEWL 168
>gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Homo
sapiens]
Length = 261
Score = 42.4 bits (98), Expect = 5e-04
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 28 RTERAAGGGDGARRFGSQ---RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEK 84
R RA G GS+ R L PD G +M + N+L F++EL+ +L +
Sbjct: 12 RPLRARGCASDGAAGGSEIQVRALAGPDQGITEILMN-RPSARNALGNVFVSELLETLAQ 70
Query: 85 LENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLV-LV 143
L D+ R ++ S GVF AG DL E S A + + ++ L + S ++ L+
Sbjct: 71 LREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIASSAVMGLI 130
Query: 144 SAINGACPAGG 154
G P G
Sbjct: 131 ETTRGLLPGAG 141
>gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo
sapiens]
Length = 364
Score = 38.1 bits (87), Expect = 0.010
Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 11/217 (5%)
Query: 56 GVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
G+ + F P N+++ E E++ +L+ D S + + + +S+G DLT
Sbjct: 119 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI--ITVLTGNGDYYSSGNDLTNFT 176
Query: 115 GRSPAHYAGYWKAVQELWLRLYQSNLV-----LVSAINGACPAGGCLVALTCDYRILADN 169
P K L LR + + L++ +NG PA G V L + + +
Sbjct: 177 DIPPGGVEEKAKNNAVL-LREFVGCFIDFPKPLIAVVNG--PAVGISVTLLGLFDAVYAS 233
Query: 170 PRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE 229
R + LG T + A L G EA G+V +V P+
Sbjct: 234 DRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPD 293
Query: 230 EQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRL 266
Q + + + +P +A +++K ++RK +L
Sbjct: 294 STFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKL 330
>gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 32.7 bits (73), Expect = 0.40
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 16/67 (23%)
Query: 97 TSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQ---ELWLRLYQSNL------VLVSAIN 147
+S PG F AGL E+CGRSP +W VQ EL+ R+ + + VL S++
Sbjct: 100 SSLEPGAFLAGL--RELCGRSP-----HWSLVQLLTELFRRVAEESAGGTCCPVLRSSLR 152
Query: 148 GACPAGG 154
GA GG
Sbjct: 153 GALCLGG 159
>gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 32.7 bits (73), Expect = 0.40
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 16/67 (23%)
Query: 97 TSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQ---ELWLRLYQSNL------VLVSAIN 147
+S PG F AGL E+CGRSP +W VQ EL+ R+ + + VL S++
Sbjct: 100 SSLEPGAFLAGL--RELCGRSP-----HWSLVQLLTELFRRVAEESAGGTCCPVLRSSLR 152
Query: 148 GACPAGG 154
GA GG
Sbjct: 153 GALCLGG 159
>gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Homo
sapiens]
Length = 227
Score = 32.3 bits (72), Expect = 0.53
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 142 LVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRA 201
L++ +NG PA G V L + + + R + LG T +
Sbjct: 71 LIAVVNG--PAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK 128
Query: 202 AERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKA 261
A L G EA G+V +V P+ Q + + + +P +A +++K ++RK
Sbjct: 129 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKR 188
Query: 262 TASRL 266
+L
Sbjct: 189 EREKL 193
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
[Homo sapiens]
Length = 554
Score = 28.9 bits (63), Expect = 5.8
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 8/184 (4%)
Query: 47 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 106
++V+ + G V+ ++ N+L+ E + E+V +L D S ++L S VF
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS--KLVLFSAAGSVFCC 343
Query: 107 GLD----LTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCD 162
GLD + + ++ Q +V ++NG G + CD
Sbjct: 344 GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 403
Query: 163 YRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGI 222
++ N + T G T +G +A L G EA G+
Sbjct: 404 --LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGL 461
Query: 223 VDQV 226
V QV
Sbjct: 462 VSQV 465
>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
a [Homo sapiens]
Length = 540
Score = 28.9 bits (63), Expect = 5.8
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 8/184 (4%)
Query: 47 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 106
++V+ + G V+ ++ N+L+ E + E+V +L D S ++L S VF
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS--KLVLFSAAGSVFCC 343
Query: 107 GLD----LTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCD 162
GLD + + ++ Q +V ++NG G + CD
Sbjct: 344 GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 403
Query: 163 YRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGI 222
++ N + T G T +G +A L G EA G+
Sbjct: 404 --LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGL 461
Query: 223 VDQV 226
V QV
Sbjct: 462 VSQV 465
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 28.9 bits (63), Expect = 5.8
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 8/184 (4%)
Query: 47 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 106
++V+ + G V+ ++ N+L+ E + E+V +L D S ++L S VF
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS--KLVLFSAAGSVFCC 343
Query: 107 GLD----LTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCD 162
GLD + + ++ Q +V ++NG G + CD
Sbjct: 344 GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 403
Query: 163 YRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGI 222
++ N + T G T +G +A L G EA G+
Sbjct: 404 --LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGL 461
Query: 223 VDQV 226
V QV
Sbjct: 462 VSQV 465
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 28.9 bits (63), Expect = 5.8
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 8/184 (4%)
Query: 47 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 106
++V+ + G V+ ++ N+L+ E + E+V +L D S ++L S VF
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS--KLVLFSAAGSVFCC 343
Query: 107 GLD----LTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCD 162
GLD + + ++ Q +V ++NG G + CD
Sbjct: 344 GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 403
Query: 163 YRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGI 222
++ N + T G T +G +A L G EA G+
Sbjct: 404 --LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGL 461
Query: 223 VDQV 226
V QV
Sbjct: 462 VSQV 465
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 28.9 bits (63), Expect = 5.8
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 8/184 (4%)
Query: 47 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 106
++V+ + G V+ ++ N+L+ E + E+V +L D S ++L S VF
Sbjct: 287 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS--KLVLFSAAGSVFCC 344
Query: 107 GLDLTEMCG--RSPAHYAG--YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCD 162
GLD R+ + A ++ Q +V ++NG G + CD
Sbjct: 345 GLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 404
Query: 163 YRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGI 222
++ N + T G T +G +A L G EA G+
Sbjct: 405 --LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGL 462
Query: 223 VDQV 226
V QV
Sbjct: 463 VSQV 466
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 28.9 bits (63), Expect = 5.8
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 8/184 (4%)
Query: 47 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 106
++V+ + G V+ ++ N+L+ E + E+V +L D S ++L S VF
Sbjct: 287 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS--KLVLFSAAGSVFCC 344
Query: 107 GLDLTEMCG--RSPAHYAG--YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCD 162
GLD R+ + A ++ Q +V ++NG G + CD
Sbjct: 345 GLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 404
Query: 163 YRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGI 222
++ N + T G T +G +A L G EA G+
Sbjct: 405 --LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGL 462
Query: 223 VDQV 226
V QV
Sbjct: 463 VSQV 466
>gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens]
Length = 412
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 16 RAGAR-LPGAALGRTERAAGGGDGARRFGSQRVLVEPDA 53
R GA+ L G+ LG RA GG ARR G+ R+ E DA
Sbjct: 108 RKGAQHLGGSGLGGVTRAEGG---ARRLGTGRLRAEKDA 143
>gi|113429036 PREDICTED: hypothetical protein [Homo sapiens]
Length = 388
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 16 RAGAR-LPGAALGRTERAAGGGDGARRFGSQRVLVEPDA 53
R GA+ L G+ LG RA GG ARR G+ R+ E DA
Sbjct: 108 RKGAQHLGGSGLGGVTRAEGG---ARRLGTGRLRAEKDA 143
>gi|169214602 PREDICTED: similar to hCG2041260 [Homo sapiens]
Length = 388
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 16 RAGAR-LPGAALGRTERAAGGGDGARRFGSQRVLVEPDA 53
R GA+ L G+ LG RA GG ARR G+ R+ E DA
Sbjct: 108 RKGAQHLGGSGLGGVTRAEGG---ARRLGTGRLRAEKDA 143
>gi|89886352 hypothetical protein LOC339229 [Homo sapiens]
Length = 147
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 20 RLPGAA--LGRTERAAGGGDGARRFGSQRVLVEPDAGA-GVAVMKFKNPP 66
RLPG L R A DG R+FG+ V V AGA G K PP
Sbjct: 33 RLPGGGSFLQRHHPGAQAPDGRRKFGTDHVEVGSQAGADGTRPPKASLPP 82
>gi|7705897 kynurenine aminotransferase II [Homo sapiens]
Length = 425
Score = 28.1 bits (61), Expect = 10.0
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 165 ILADNPRYCIGLNETQLGIIAPF-WLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIV 223
ILA ++ GL E + F W+K N + E+A+++G+L P A V
Sbjct: 333 ILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF---YV 389
Query: 224 DQVVPEEQVQSTALSAIAQWMAI 246
D P ++++ SA + M +
Sbjct: 390 DSSAPSPYLRASFSSASPEQMDV 412
>gi|33469970 kynurenine aminotransferase II [Homo sapiens]
Length = 425
Score = 28.1 bits (61), Expect = 10.0
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 165 ILADNPRYCIGLNETQLGIIAPF-WLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIV 223
ILA ++ GL E + F W+K N + E+A+++G+L P A V
Sbjct: 333 ILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF---YV 389
Query: 224 DQVVPEEQVQSTALSAIAQWMAI 246
D P ++++ SA + M +
Sbjct: 390 DSSAPSPYLRASFSSASPEQMDV 412
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 28.1 bits (61), Expect = 10.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 100 RPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRL 135
RP S G DL CGR PAH + E W RL
Sbjct: 43 RPPRLSRGKDLKPRCGRGPAHSPDPGEGC-EAWRRL 77
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 28.1 bits (61), Expect = 10.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 100 RPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRL 135
RP S G DL CGR PAH + E W RL
Sbjct: 43 RPPRLSRGKDLKPRCGRGPAHSPDPGEGC-EAWRRL 77
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 28.1 bits (61), Expect = 10.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 100 RPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRL 135
RP S G DL CGR PAH + E W RL
Sbjct: 43 RPPRLSRGKDLKPRCGRGPAHSPDPGEGC-EAWRRL 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,598,909
Number of Sequences: 37866
Number of extensions: 439253
Number of successful extensions: 1231
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 36
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.