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Search of human proteins with 61969666
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61969666 arginine-fifty homeobox [Homo sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61969666 arginine-fifty homeobox [Homo sapiens] 639 0.0
gi|4557489 cone-rod homeobox protein [Homo sapiens] 136 3e-32
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 103 3e-22
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 101 8e-22
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 81 1e-15
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 75 6e-14
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 75 6e-14
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 75 6e-14
gi|46249382 paired-like homeobox 2a [Homo sapiens] 74 2e-13
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 72 5e-13
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 72 5e-13
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 72 8e-13
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 71 1e-12
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 71 1e-12
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 71 1e-12
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 71 1e-12
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 71 1e-12
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 71 1e-12
gi|219802098 leucine twenty homeobox [Homo sapiens] 71 1e-12
gi|7706659 paired related homeobox 2 [Homo sapiens] 71 1e-12
gi|27777663 goosecoid [Homo sapiens] 70 2e-12
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 70 3e-12
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 70 3e-12
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 70 3e-12
gi|12707580 paired-like homeobox 2b [Homo sapiens] 70 3e-12
gi|122937321 UNC homeobox [Homo sapiens] 70 3e-12
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 69 4e-12
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 69 4e-12
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 69 4e-12
gi|24497589 aristaless related homeobox [Homo sapiens] 69 5e-12
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 639 bits (1648), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MRNRMAPENPQPDPFINRNYSNMKVIPPQDPASPSFTLLSKLECSGTVSAYCSLNLPGST 60
MRNRMAPENPQPDPFINRNYSNMKVIPPQDPASPSFTLLSKLECSGTVSAYCSLNLPGST
Sbjct: 1 MRNRMAPENPQPDPFINRNYSNMKVIPPQDPASPSFTLLSKLECSGTVSAYCSLNLPGST 60
Query: 61 DPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPES 120
DPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPES
Sbjct: 61 DPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPES 120
Query: 121 TVKVWFRNRRFKLKKQQQQQSAKQRNQILPSKKNVPTSPRTSPSPYAFSPVISDFYSSLP 180
TVKVWFRNRRFKLKKQQQQQSAKQRNQILPSKKNVPTSPRTSPSPYAFSPVISDFYSSLP
Sbjct: 121 TVKVWFRNRRFKLKKQQQQQSAKQRNQILPSKKNVPTSPRTSPSPYAFSPVISDFYSSLP 180
Query: 181 SQPLDPSNWAWNSTFTESSTSDFQMQDTQWERLVASVPALYSDAYDIFQIIELYNLPDEN 240
SQPLDPSNWAWNSTFTESSTSDFQMQDTQWERLVASVPALYSDAYDIFQIIELYNLPDEN
Sbjct: 181 SQPLDPSNWAWNSTFTESSTSDFQMQDTQWERLVASVPALYSDAYDIFQIIELYNLPDEN 240
Query: 241 EISSSSFHCLYQYLSPTKYQVGGQGSSLSIFAGPAVGLSPAQTWPNMTSQAFEAYSLTDS 300
EISSSSFHCLYQYLSPTKYQVGGQGSSLSIFAGPAVGLSPAQTWPNMTSQAFEAYSLTDS
Sbjct: 241 EISSSSFHCLYQYLSPTKYQVGGQGSSLSIFAGPAVGLSPAQTWPNMTSQAFEAYSLTDS 300
Query: 301 LEFQKTSNMVDLGFL 315
LEFQKTSNMVDLGFL
Sbjct: 301 LEFQKTSNMVDLGFL 315
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 136 bits (342), Expect = 3e-32
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 9/239 (3%)
Query: 73 TAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFK 132
+A R++ +ERT+FT Q EELEALF++T +PD +E++AL+++LPES V+VWF+NRR K
Sbjct: 34 SAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAK 93
Query: 133 LKKQQQQQSAKQ-----RNQILPSKKNVPTSPRTSPSPYAFSPVISDFYSSLPSQPLDPS 187
++Q+QQQ +Q + + P+K+ TSPR S ISD YS P
Sbjct: 94 CRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSP 153
Query: 188 NWAWNSTFTESSTSDFQMQDTQWERLVASVPALYSDAYDI--FQIIELYNLPDENEISSS 245
A + S S+ + + Q LVAS P+L S Y + + P SS
Sbjct: 154 TTAVATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSS 213
Query: 246 SFHCLYQYLSPTKYQVGGQGSSLSIFAGPAVGLSPAQTWPNMTSQAFEAYSLTDSLEFQ 304
F L YLSP Q+G G +LS +GP+VG S AQ+ +++ Q++ AYS DSLEF+
Sbjct: 214 YFSGLDPYLSPMVPQLG--GPALSPLSGPSVGPSLAQSPTSLSGQSYGAYSPVDSLEFK 270
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 103 bits (256), Expect = 3e-22
Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 37/286 (12%)
Query: 42 LECSGTVSAYCSLNLPGSTDPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALFSQTM 101
L SG + S+ PG AS AAT R++ +ERT+FT Q + LEALF++T
Sbjct: 17 LTTSGMDLLHPSVGYPGPW-----ASCPAATP--RKQRRERTTFTRAQLDVLEALFAKTR 69
Query: 102 FPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKKQQQQQSAKQRNQILPSKKNVPTSPRT 161
+PD ++E++AL+++LPES V+VWF+NRR K ++QQQQQ +N++ P+KK TSP
Sbjct: 70 YPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKK--TSPAR 127
Query: 162 SPSPYA-----FSPVISDFYSSLPSQPLDPSNWAWNSTFTES---STSDFQMQDTQWERL 213
S + F+P S ++ S S W+ S S STS MQ
Sbjct: 128 EVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSSSCMQ------- 180
Query: 214 VASVPALYSDAYDIFQIIELYNLPDENEISSSSFHCLYQYLSPTKYQVGGQGSSLSIFAG 273
S P Y+ A Y+ S YL+P +Q+ G G++LS
Sbjct: 181 -RSYPMTYTQASG-------YSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSPMGT 232
Query: 274 PAVGLSPAQTWPNMTSQAFEAYSL-----TDSLEFQKTSNMVDLGF 314
AV Q+ ++++Q + A SL TD L+++ + L F
Sbjct: 233 NAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNF 278
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 101 bits (252), Expect = 8e-22
Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 30/252 (11%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ +ERT+FT Q + LEALF++T +PD ++E++AL+++LPES V+VWF+NRR K ++
Sbjct: 36 RKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSPSPYA-----FSPVISDFYSSLPSQPLDPSNWA 190
QQQQQ +N++ P+KK TSP S + F+P S ++ S S W+
Sbjct: 96 QQQQQQNGGQNKVRPAKKK--TSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWS 153
Query: 191 WNSTFTES---STSDFQMQDTQWERLVASVPALYSDAYDIFQIIELYNLPDENEISSSSF 247
S S STS MQ S P Y+ A Y+ S
Sbjct: 154 PASISPLSDPLSTSSSCMQ--------RSYPMTYTQASG-------YSQGYAGSTSYFGG 198
Query: 248 HCLYQYLSPTKYQVGGQGSSLSIFAGPAVGLSPAQTWPNMTSQAFEAYSL-----TDSLE 302
YL+P +Q+ G G++LS AV Q+ ++++Q + A SL TD L+
Sbjct: 199 MDCGSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLD 258
Query: 303 FQKTSNMVDLGF 314
++ + L F
Sbjct: 259 YKDQTASWKLNF 270
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 81.3 bits (199), Expect = 1e-15
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ +ERT+FT Q + LEALF++T +PD ++E++AL+++LPES V+VWF+NRR K ++
Sbjct: 36 RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSPSPYAFSPVISDFYSSLPSQPLDPSN 188
QQQ S + V S + S P +S SS S +N
Sbjct: 96 QQQSGSGTKSRPAKKKSSPVRESSGSESSGQFTPPAVSSSASSSSSASSSSAN 148
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 75.5 bits (184), Expect = 6e-14
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 32/175 (18%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R+ + RTSFT +Q E LE F +T +PD +E+LA ++DLPE+ ++VWF NRR K ++
Sbjct: 208 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 267
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTS---PSPYAFSPV---------------ISDFYS 177
+++ ++ +++ PS + +S TS P P +PV +++ YS
Sbjct: 268 EEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYS 327
Query: 178 SLPSQPLDPSNWAWNSTFTESSTSDFQ----MQDTQWERLVASVPALYSDAYDIF 228
+LP P +FT ++ Q Q + + ++ + P++ +YD +
Sbjct: 328 ALPPMP----------SFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTY 372
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 75.5 bits (184), Expect = 6e-14
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 32/175 (18%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R+ + RTSFT +Q E LE F +T +PD +E+LA ++DLPE+ ++VWF NRR K ++
Sbjct: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 281
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTS---PSPYAFSPV---------------ISDFYS 177
+++ ++ +++ PS + +S TS P P +PV +++ YS
Sbjct: 282 EEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYS 341
Query: 178 SLPSQPLDPSNWAWNSTFTESSTSDFQ----MQDTQWERLVASVPALYSDAYDIF 228
+LP P +FT ++ Q Q + + ++ + P++ +YD +
Sbjct: 342 ALPPMP----------SFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTY 386
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 75.5 bits (184), Expect = 6e-14
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 32/175 (18%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R+ + RTSFT +Q E LE F +T +PD +E+LA ++DLPE+ ++VWF NRR K ++
Sbjct: 208 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 267
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTS---PSPYAFSPV---------------ISDFYS 177
+++ ++ +++ PS + +S TS P P +PV +++ YS
Sbjct: 268 EEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYS 327
Query: 178 SLPSQPLDPSNWAWNSTFTESSTSDFQ----MQDTQWERLVASVPALYSDAYDIF 228
+LP P +FT ++ Q Q + + ++ + P++ +YD +
Sbjct: 328 ALPPMP----------SFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTY 372
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 73.9 bits (180), Expect = 2e-13
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT Q +ELE +F++T +PD +E+LAL++DL E+ V+VWF+NRR K +K
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 147
Query: 136 QQQQQSAKQRNQILPSKK-NVPTSPRTSPSPYAFSPVISDFYSSLPSQP 183
Q++ SAK +KK S S + D +SLP P
Sbjct: 148 QERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPP 196
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 72.4 bits (176), Expect = 5e-13
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 53 SLNLPGSTDPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLA 112
SL+LP S P S +A + +RR+ RT+F+ Q EELE +F +T +PD +E+LA
Sbjct: 131 SLHLPLSPGLPDSME-LAKNKSKKRRN--RTTFSTFQLEELEKVFQKTHYPDVYAREQLA 187
Query: 113 LRLDLPESTVKVWFRNRRFKLKKQQQQQSAKQRNQILPSKKNVPTSPRTSPSPYAFSPVI 172
LR DL E+ V+VWF+NRR K +K+++ ++ + ++ PRT P + +
Sbjct: 188 LRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW 247
Query: 173 SDFYSSLPSQP 183
+ S P P
Sbjct: 248 ASPGSGSPGGP 258
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 72.4 bits (176), Expect = 5e-13
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
+RRH RT+FT Q EELE +F +T +PD ++E+LALR +L E+ V+VWF+NRR K +K
Sbjct: 132 KRRH--RTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRK 189
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSPSP 165
+++ +Q + ++ PRT P
Sbjct: 190 RERYGQIQQAKSHFAATYDISVLPRTDSYP 219
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 71.6 bits (174), Expect = 8e-13
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT QQ E LEA+F+QT +PD +E+LA++++L E+ V+VWF+NRR K +K
Sbjct: 36 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRK 95
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSPSP 165
++ S ++ P + P R SP
Sbjct: 96 TERGASDQEPGAKEPMAEVTPPPVRNINSP 125
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 216 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 275
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP-----RTSPSPYAFSPVISDFYSSL-PSQPLDP 186
Q N ++P +PT P TS P + +SD S++ QPL P
Sbjct: 276 QAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPP 335
Query: 187 S 187
S
Sbjct: 336 S 336
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP-----RTSPSPYAFSPVISDFYSSL-PSQPLDP 186
Q N ++P +PT P TS P + +SD S++ QPL P
Sbjct: 277 QAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPP 336
Query: 187 S 187
S
Sbjct: 337 S 337
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP-----RTSPSPYAFSPVISDFYSSL-PSQPLDP 186
Q N ++P +PT P TS P + +SD S++ QPL P
Sbjct: 277 QAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPP 336
Query: 187 S 187
S
Sbjct: 337 S 337
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP-----RTSPSPYAFSPVISDFYSSL-PSQPLDP 186
Q N ++P +PT P TS P + +SD S++ QPL P
Sbjct: 277 QAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPP 336
Query: 187 S 187
S
Sbjct: 337 S 337
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP-----RTSPSPYAFSPVISDFYSSL-PSQPLDP 186
Q N ++P +PT P TS P + +SD S++ QPL P
Sbjct: 277 QAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPP 336
Query: 187 S 187
S
Sbjct: 337 S 337
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP-----RTSPSPYAFSPVISDFYSSL-PSQPLDP 186
Q N ++P +PT P TS P + +SD S++ QPL P
Sbjct: 277 QAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPP 336
Query: 187 S 187
S
Sbjct: 337 S 337
>gi|219802098 leucine twenty homeobox [Homo sapiens]
Length = 168
Score = 71.2 bits (173), Expect = 1e-12
Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 101 MFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKKQQQQQ-----SAKQRNQILPSKKNV 155
M P KLA +L L S VK+WF+N+R K K+QQ+QQ S NQ KK
Sbjct: 1 MHPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEE 60
Query: 156 PTSPRTSPSPYAFSPVISDFYSSLPSQPLDPSNWAWNSTFTESSTSDFQMQDTQWERLVA 215
S T+ + SP ISD +P N S S+ D Q D + L A
Sbjct: 61 TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA 120
Query: 216 SVPALYSDAYDIFQIIELYNLPDENEISSSSFHCLYQYLSP 256
S P S ++I + +++Y+LP E++ SS L QYL P
Sbjct: 121 SNPPWASTLFEIDEFVKIYDLPGEDDTSS-----LNQYLFP 156
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 70.9 bits (172), Expect = 1e-12
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 65 SASRVAATTAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKV 124
S R +A +++ + RT+F Q + LE +F +T +PD ++E+LA R++L E+ V+V
Sbjct: 91 SPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQV 150
Query: 125 WFRNRRFKLKKQQQQQSAKQRNQILPS-KKNVPTSPRTSPSPYAFSPVISDFYSSLPSQP 183
WF+NRR K ++ ++ A + +L S + +P P A SP + +S P
Sbjct: 151 WFQNRRAKFRRNERAMLASRSASLLKSYSQEAAIEQPVAPRPTALSPDYLSWTASSPYST 210
Query: 184 LDP 186
+ P
Sbjct: 211 VPP 213
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 70.5 bits (171), Expect = 2e-12
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
RR+ + RT FT +Q E LE LF +T +PD +E+LA ++ L E V+VWF+NRR K ++
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSP 163
Q++ S + N K N +S + SP
Sbjct: 218 QKRSSSEESEN---AEKWNKTSSSKASP 242
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 274
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP--RTSPSPYAFSPVISDFYSSL-PSQPLDPS 187
Q N +LP +PT P + S Y + + D S++ QPL PS
Sbjct: 275 QAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPS 332
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 213 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 272
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP--RTSPSPYAFSPVISDFYSSL-PSQPLDPS 187
Q N +LP +PT P + S Y + + D S++ QPL PS
Sbjct: 273 QAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPS 330
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT +Q EELE F +T +PD +E+LA R L E+ V+VWF NRR + +K
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 274
Query: 136 QQQQQSAKQRNQILPS---KKNVPTSP--RTSPSPYAFSPVISDFYSSL-PSQPLDPS 187
Q N +LP +PT P + S Y + + D S++ QPL PS
Sbjct: 275 QAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPS 332
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 69.7 bits (169), Expect = 3e-12
Identities = 31/67 (46%), Positives = 51/67 (76%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT Q +ELE +F++T +PD +E+LAL++DL E+ V+VWF+NRR K +K
Sbjct: 96 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 155
Query: 136 QQQQQSA 142
Q++ +A
Sbjct: 156 QERAAAA 162
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 69.7 bits (169), Expect = 3e-12
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 77 RRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKKQ 136
+R + RT+FT Q EELE F+++ +PD ++E LALRLDL ES V+VWF+NRR K +K+
Sbjct: 104 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKK 163
Query: 137 QQQQSAKQRNQILPSKKNVPTSPRTSP 163
+ + R P+ + PT+ P
Sbjct: 164 ENTKKGPGR----PAHNSHPTTCSGEP 186
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 69.3 bits (168), Expect = 4e-12
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 8/101 (7%)
Query: 46 GTVSAYCSLNLPG--------STDPPTSASRVAATTAIRRRHKERTSFTHQQYEELEALF 97
G S+Y S+ G S+D P+ + + + ++ + RT+FT Q EELE +F
Sbjct: 174 GMDSSYLSVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVF 233
Query: 98 SQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKKQQQ 138
+T +PD +E+LA+R DL E+ V+VWF+NRR K +K+++
Sbjct: 234 QKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 69.3 bits (168), Expect = 4e-12
Identities = 33/90 (36%), Positives = 57/90 (63%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT QQ E LE F +T +PD ++E+LA+ +LPE+ V+VWF+NRR K +K
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK 128
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSPSP 165
+Q+ +Q + ++ + +P+P
Sbjct: 129 KQRSLQKEQLQKQKEAEGSHGEGKAEAPTP 158
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 69.3 bits (168), Expect = 4e-12
Identities = 33/90 (36%), Positives = 57/90 (63%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT QQ E LE F +T +PD ++E+LA+ +LPE+ V+VWF+NRR K +K
Sbjct: 64 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK 123
Query: 136 QQQQQSAKQRNQILPSKKNVPTSPRTSPSP 165
+Q+ +Q + ++ + +P+P
Sbjct: 124 KQRSLQKEQLQKQKEAEGSHGEGKAEAPTP 153
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 68.9 bits (167), Expect = 5e-12
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 76 RRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135
R++ + RT+FT Q EELE F +T +PD +E+LA+RLDL E+ V+VWF+NRR K +K
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385
Query: 136 QQQQQSAKQRNQIL---PSKKNVPTSPRTSPSPY---------AFSPVISDFYSSLPSQP 183
+++ + + P P SP SP+ A++ + ++ PS P
Sbjct: 386 REKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLP 445
Query: 184 LDPSN 188
P +
Sbjct: 446 PPPGS 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,392,825
Number of Sequences: 37866
Number of extensions: 655787
Number of successful extensions: 3511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 2994
Number of HSP's gapped (non-prelim): 553
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.