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Search of human proteins with 61966711
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1
[Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 578 e-165
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 557 e-159
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 537 e-153
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 537 e-153
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 537 e-153
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 523 e-149
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 523 e-149
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 514 e-146
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 514 e-146
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 245 3e-65
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 245 3e-65
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 245 3e-65
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 245 3e-65
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 206 2e-53
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 186 2e-47
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 53 3e-07
gi|115529449 upstream binding transcription factor, RNA polymera... 52 6e-07
gi|115529451 upstream binding transcription factor, RNA polymera... 52 6e-07
gi|7657671 upstream binding transcription factor, RNA polymerase... 52 6e-07
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 50 2e-06
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 50 2e-06
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 50 2e-06
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 50 2e-06
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 50 2e-06
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 50 2e-06
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 50 3e-06
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 49 5e-06
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 48 1e-05
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 48 1e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 48 1e-05
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 578 bits (1489), Expect = e-165
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
Sbjct: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 557 bits (1435), Expect = e-159
Identities = 282/293 (96%), Positives = 289/293 (98%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHS+NSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQV INLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
DGMYSFPARVPPPPPIALAVVPSKRQR+SGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGAEDSAEEGDPLDDD NEDQGD+QL LIK++EK+AEEGED+RDSTNGQDDS
Sbjct: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 537 bits (1383), Expect = e-153
Identities = 274/293 (93%), Positives = 279/293 (95%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
GMYSFPARVPPPPPIALAVVPSKRQR+SGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKE KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGA+DS EEGD L DD NEDQGD+QLELIKDDEK AEEGEDDRD NGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 537 bits (1383), Expect = e-153
Identities = 274/293 (93%), Positives = 279/293 (95%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
GMYSFPARVPPPPPIALAVVPSKRQR+SGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKE KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGA+DS EEGD L DD NEDQGD+QLELIKDDEK AEEGEDDRD NGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 537 bits (1383), Expect = e-153
Identities = 274/293 (93%), Positives = 279/293 (95%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
GMYSFPARVPPPPPIALAVVPSKRQR+SGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKE KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGA+DS EEGD L DD NEDQGD+QLELIKDDEK AEEGEDDRD NGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 523 bits (1348), Expect = e-149
Identities = 266/293 (90%), Positives = 278/293 (94%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY FQRDYY
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
D MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSSS+KKDET+VKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGA+DSAEEGD LDDD NED+GDDQLELIKDDEKEAEEGEDDRDS NG+DDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 523 bits (1348), Expect = e-149
Identities = 266/293 (90%), Positives = 278/293 (94%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY FQRDYY
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
D MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSSS+KKDET+VKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
EGGA+DSAEEGD LDDD NED+GDDQLELIKDDEKEAEEGEDDRDS NG+DDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 514 bits (1324), Expect = e-146
Identities = 266/306 (86%), Positives = 278/306 (90%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 108 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR 167
SFDLDY FQRDYYD MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS 227
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 228 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST 287
S+KKDET+VKMESEGGA+DSAEEGD LDDD NED+GDDQLELIKDDEKEAEEGEDDRDS
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 288 NGQDDS 293
NG+DDS
Sbjct: 301 NGEDDS 306
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 514 bits (1324), Expect = e-146
Identities = 266/306 (86%), Positives = 278/306 (90%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 108 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR 167
SFDLDY FQRDYYD MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS 227
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 228 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST 287
S+KKDET+VKMESEGGA+DSAEEGD LDDD NED+GDDQLELIKDDEKEAEEGEDDRDS
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 288 NGQDDS 293
NG+DDS
Sbjct: 301 NGEDDS 306
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 245 bits (626), Expect = 3e-65
Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271
Q + + + +EGG + D E D +++D +ED G + IK
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 245 bits (626), Expect = 3e-65
Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271
Q + + + +EGG + D E D +++D +ED G + IK
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 245 bits (626), Expect = 3e-65
Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271
Q + + + +EGG + D E D +++D +ED G + IK
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 245 bits (626), Expect = 3e-65
Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 21 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
Query: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 81 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271
Q + + + +EGG + D E D +++D +ED G + IK
Sbjct: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 206 bits (525), Expect = 2e-53
Identities = 130/296 (43%), Positives = 170/296 (57%), Gaps = 20/296 (6%)
Query: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYGFQRDYY 120
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y G FD DY ++ D+Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
D ++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
Query: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETH 235
K +LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGG 242
Query: 236 VKMESEGGAED---------SAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGED 282
GG ++E G P + D GD++ L+ E+E E +D
Sbjct: 243 GSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQD 297
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 186 bits (473), Expect = 2e-47
Identities = 128/295 (43%), Positives = 161/295 (54%), Gaps = 34/295 (11%)
Query: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYYD 121
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
Query: 122 GMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
Query: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHV 236
+LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGG 227
Query: 237 KMESEGGAED---------SAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGED 282
GG ++E G P + D GD++ L+ E+E E +D
Sbjct: 228 SGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQD 281
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 53.1 bits (126), Expect = 3e-07
Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 11 PHSMNS-RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAG 69
P +N+ ++F+GN++ + ++ ++F + G++ C V K +AFV +KE +A+AA+A
Sbjct: 73 PRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 70 EDGRMIASQVVDINLAAEPK-------VNRGNAGVKRSAAEM-------YGSSFDLDYGF 115
+G+ + + +++ L+ + + V G+ K A + + ++FD F
Sbjct: 132 LNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFDYQQAF 191
Query: 116 QRDYYDGMYSFPARVPPPP 134
G + AR P PP
Sbjct: 192 GNS--TGGFDGQARQPTPP 208
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDG 72
++F+GN++ ++ A+F+ YG + C+V K FAFV + A A+ G
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 52.0 bits (123), Expect = 6e-07
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 185 QELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGA 244
Q+ K+ + + +++ K+ K +KSE E+ + DE + E +
Sbjct: 603 QDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDEN 662
Query: 245 EDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
DS+E+G + +ED+ +D E +DDE E ++ +DD D N + S
Sbjct: 663 GDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGS 711
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 175 LKGDDLQAIKQELTQIKQKVDSLLENLEKIEKE--QSKQEVEVKNAKSEEEQSSSSMKKD 232
L D A K+ ++ ++ + L K + QSK E E + + E+++ ++D
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659
Query: 233 ETHVKMESEGG------AEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDS 286
+ + +GG +ED +E+GD ++D +ED+ DD+ DDE E E E S
Sbjct: 660 DENGDSSEDGGDSSESSSEDESEDGDENEED-DEDEDDDE----DDDEDEDNESEGSSSS 714
Query: 287 TNGQDDS 293
++ DS
Sbjct: 715 SSSSGDS 721
Score = 32.7 bits (73), Expect = 0.39
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 141 VPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLEN 200
+ +KR+ ++ KS + K S + + DD ++E + + DS +
Sbjct: 612 ISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEE--EDDENGDSSEDG 669
Query: 201 LEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVN 259
+ E S+ E E + E+++ + D+ ESEG + S+ GD D D N
Sbjct: 670 GDSSESS-SEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN 727
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 52.0 bits (123), Expect = 6e-07
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 185 QELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGA 244
Q+ K+ + + +++ K+ K +KSE E+ + DE + E +
Sbjct: 603 QDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDEN 662
Query: 245 EDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
DS+E+G + +ED+ +D E +DDE E ++ +DD D N + S
Sbjct: 663 GDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGS 711
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 175 LKGDDLQAIKQELTQIKQKVDSLLENLEKIEKE--QSKQEVEVKNAKSEEEQSSSSMKKD 232
L D A K+ ++ ++ + L K + QSK E E + + E+++ ++D
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659
Query: 233 ETHVKMESEGG------AEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDS 286
+ + +GG +ED +E+GD ++D +ED+ DD+ DDE E E E S
Sbjct: 660 DENGDSSEDGGDSSESSSEDESEDGDENEED-DEDEDDDE----DDDEDEDNESEGSSSS 714
Query: 287 TNGQDDS 293
++ DS
Sbjct: 715 SSSSGDS 721
Score = 32.7 bits (73), Expect = 0.39
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 141 VPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLEN 200
+ +KR+ ++ KS + K S + + DD ++E + + DS +
Sbjct: 612 ISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEE--EDDENGDSSEDG 669
Query: 201 LEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVN 259
+ E S+ E E + E+++ + D+ ESEG + S+ GD D D N
Sbjct: 670 GDSSESS-SEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN 727
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 52.0 bits (123), Expect = 6e-07
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 185 QELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGA 244
Q+ K+ + + +++ K+ K +KSE E+ + DE + E +
Sbjct: 640 QDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDEN 699
Query: 245 EDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
DS+E+G + +ED+ +D E +DDE E ++ +DD D N + S
Sbjct: 700 GDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGS 748
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 175 LKGDDLQAIKQELTQIKQKVDSLLENLEKIEKE--QSKQEVEVKNAKSEEEQSSSSMKKD 232
L D A K+ ++ ++ + L K + QSK E E + + E+++ ++D
Sbjct: 637 LSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 696
Query: 233 ETHVKMESEGG------AEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDS 286
+ + +GG +ED +E+GD ++D +ED+ DD+ DDE E E E S
Sbjct: 697 DENGDSSEDGGDSSESSSEDESEDGDENEED-DEDEDDDE----DDDEDEDNESEGSSSS 751
Query: 287 TNGQDDS 293
++ DS
Sbjct: 752 SSSSGDS 758
Score = 32.7 bits (73), Expect = 0.39
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 141 VPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLEN 200
+ +KR+ ++ KS + K S + + DD ++E + + DS +
Sbjct: 649 ISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEE--EDDENGDSSEDG 706
Query: 201 LEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVN 259
+ E S+ E E + E+++ + D+ ESEG + S+ GD D D N
Sbjct: 707 GDSSESS-SEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN 764
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/149 (21%), Positives = 66/149 (44%)
Query: 144 KRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEK 203
+ +RL + R S + + K K+ K D + K +++ ++
Sbjct: 105 RNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRAS 164
Query: 204 IEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQG 263
+ SK+EV + S+ E SS ++ + E G E+ EE + +++D ED+
Sbjct: 165 RSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEE 224
Query: 264 DDQLELIKDDEKEAEEGEDDRDSTNGQDD 292
D+ +++E+E EE E++ + + D
Sbjct: 225 VDEDGEEEEEEEEEEEEEEEEEEEEYEQD 253
Score = 38.5 bits (88), Expect = 0.007
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 129 RVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKS----GKRGSSKSGKLKGDDLQAIK 184
R P P + + R + +S+ K NS+ + GSS S +G++ +
Sbjct: 143 RAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTE--- 199
Query: 185 QELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGA 244
++ V+ +E E++E E ++++ EV EEE+ +++E + E E
Sbjct: 200 ----NEEEGVEEDVEEDEEVE-EDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDE 254
Query: 245 EDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDD 292
D EEG+ D D + D E + + G T+G D+
Sbjct: 255 RDQKEEGN--DYDTRSEASDSGSESVSFTDGSVRSG----SGTDGSDE 296
Score = 32.0 bits (71), Expect = 0.66
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVK 216
++G + S ++G++ + +G + + E + + D ++ + E+E+ ++E E +
Sbjct: 184 ETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEE 243
Query: 217 NAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPL-DDDVNEDQGDDQLELIKDDEK 275
+ EE + +K+E + ++ A DS E D V G D + K + K
Sbjct: 244 EEEEEEYEQDERDQKEEGN-DYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERK 302
Query: 276 EA 277
A
Sbjct: 303 RA 304
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/149 (21%), Positives = 66/149 (44%)
Query: 144 KRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEK 203
+ +RL + R S + + K K+ K D + K +++ ++
Sbjct: 105 RNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRAS 164
Query: 204 IEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQG 263
+ SK+EV + S+ E SS ++ + E G E+ EE + +++D ED+
Sbjct: 165 RSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEE 224
Query: 264 DDQLELIKDDEKEAEEGEDDRDSTNGQDD 292
D+ +++E+E EE E++ + + D
Sbjct: 225 VDEDGEEEEEEEEEEEEEEEEEEEEYEQD 253
Score = 38.5 bits (88), Expect = 0.007
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 129 RVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKS----GKRGSSKSGKLKGDDLQAIK 184
R P P + + R + +S+ K NS+ + GSS S +G++ +
Sbjct: 143 RAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTE--- 199
Query: 185 QELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGA 244
++ V+ +E E++E E ++++ EV EEE+ +++E + E E
Sbjct: 200 ----NEEEGVEEDVEEDEEVE-EDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDE 254
Query: 245 EDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDD 292
D EEG+ D D + D E + + G T+G D+
Sbjct: 255 RDQKEEGN--DYDTRSEASDSGSESVSFTDGSVRSG----SGTDGSDE 296
Score = 32.0 bits (71), Expect = 0.66
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVK 216
++G + S ++G++ + +G + + E + + D ++ + E+E+ ++E E +
Sbjct: 184 ETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEE 243
Query: 217 NAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPL-DDDVNEDQGDDQLELIKDDEK 275
+ EE + +K+E + ++ A DS E D V G D + K + K
Sbjct: 244 EEEEEEYEQDERDQKEEGN-DYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERK 302
Query: 276 EA 277
A
Sbjct: 303 RA 304
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIA------GCSVHK--GFAFVQYDKEKNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+I C +K GFAF+ +++ +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
+G+ + + + + A +P G G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIA------GCSVHK--GFAFVQYDKEKNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+I C +K GFAF+ +++ +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
+G+ + + + + A +P G G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo
sapiens]
Length = 272
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
RVFIG LN ++ DVE F YG+I + +GF FV+++ ++A AV DG+ +
Sbjct: 5 RVFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63
Query: 77 SQVVDINLA-AEPKVNRG 93
S+ V I A A + RG
Sbjct: 64 SERVTIEHARARSRGGRG 81
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo
sapiens]
Length = 272
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
RVFIG LN ++ DVE F YG+I + +GF FV+++ ++A AV DG+ +
Sbjct: 5 RVFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63
Query: 77 SQVVDINLA-AEPKVNRG 93
S+ V I A A + RG
Sbjct: 64 SERVTIEHARARSRGGRG 81
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 49.7 bits (117), Expect = 3e-06
Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 43/285 (15%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
RV+IG L+ ++ DVE F YGKI + G+ FV++D ++A AV +G+ +
Sbjct: 3 RVYIGRLS-YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61
Query: 77 SQVVDINLAAEPK------VNRGNAGVKRSAAEMYGSSFDLDYGF-------------QR 117
+ V + A P+ R G +RS + YG +Y +
Sbjct: 62 GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLK 121
Query: 118 DY--------YDGMYSFPARVPPPPPIALAVVPSKRQRLSGNT--------------SRR 155
DY Y + ++ + + ++L G SRR
Sbjct: 122 DYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRR 181
Query: 156 GKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEV 215
+S S+S R S+S + ++ + + K + S + + K +S+ +
Sbjct: 182 RRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSR-SKSRSRSQSRS 240
Query: 216 KNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVNE 260
++ K + S + +H +S ++D AEE +D+V +
Sbjct: 241 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGK 285
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 48.9 bits (115), Expect = 5e-06
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 178 DDLQAIKQELTQIKQK--VDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSS--SSMKKDE 233
D A+ ++Q+K+K +L E +EK+ K++ ++ E K+ K E+E+ + S K++
Sbjct: 96 DGSWALADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKLEKEKEAKEGSEPKEQ 155
Query: 234 THVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGED 282
++ E G+ED A E D D N D L+ +KD +K+ ++G++
Sbjct: 156 EDLQENDEEGSEDEASETDYSSADENILTKADTLK-VKDRKKKKKKGQE 203
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 47.8 bits (112), Expect = 1e-05
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 19/126 (15%)
Query: 169 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKI-EKEQSKQEVEVKNAKSEEEQSSS 227
++K+G+ K + A ++E+ ++K+ EN+E EK K+E K+EEE
Sbjct: 79 NAKNGEAKITEAPASEKEIVEVKE------ENIEDATEKGGEKKEAVAAEVKNEEEDQKE 132
Query: 228 SMKKDETHVKMESEGGAEDSAEEG--DPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRD 285
+E + + E G ED E+G D +D ++G+D E K+D K+ E+G+
Sbjct: 133 D---EEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKE--KEDGKKGEDGKG--- 184
Query: 286 STNGQD 291
NG+D
Sbjct: 185 --NGED 188
Score = 45.4 bits (106), Expect = 6e-05
Identities = 38/185 (20%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 116 QRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKL 175
+ DY + + A++ P +V K + + T K G++ + + ++
Sbjct: 73 EEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATE---------KGGEKKEAVAAEV 123
Query: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDET- 234
K ++ + E Q ++K ++ E+ ++ +E K++ N K E+ + KK E
Sbjct: 124 KNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKN-GNEKGEDAKEKEDGKKGEDG 182
Query: 235 -------HVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST 287
K E E ED E GD +++ +++GD K + K+ + ED+++
Sbjct: 183 KGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGD------KKEGKDVKVKEDEKERE 236
Query: 288 NGQDD 292
+G++D
Sbjct: 237 DGKED 241
Score = 43.5 bits (101), Expect = 2e-04
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 150 GNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQS 209
G ++ + G + GK G+ + GK KG+D ++E K+ D EN + EK
Sbjct: 167 GEDAKEKEDGKKGEDGK-GNGEDGKEKGED----EKEEEDRKETGDGK-ENEDGKEKGDK 220
Query: 210 KQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLEL 269
K+ +VK + E+E+ E EGG E+ A G +D E++G ++ E+
Sbjct: 221 KEGKDVKVKEDEKEREDGK----------EDEGGNEEEA--GKEKEDLKEEEEGKEEDEI 268
Query: 270 IKDDEKEAE 278
+DD K+ E
Sbjct: 269 KEDDGKKEE 277
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 150 GNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQS 209
G + K + GK K+G KG+D K+K D K E
Sbjct: 142 GEAGKEDKDEKGEEDGKE--DKNGNEKGEDA----------KEKEDGKKGEDGKGNGEDG 189
Query: 210 KQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLEL 269
K++ E + + + +++ + ++ K + + G + +E + +D ED+G ++ E
Sbjct: 190 KEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEA 249
Query: 270 --IKDDEKEAEEGEDD 283
K+D KE EEG+++
Sbjct: 250 GKEKEDLKEEEEGKEE 265
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 163 KSGKRGSSKSGKLKGD----DLQAIKQELTQIKQKV---DSLLENLEKIEKE------QS 209
K + SS+ K K D ++ Q + + KQ+ + EN + E +
Sbjct: 35 KPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASE 94
Query: 210 KQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLEL 269
K+ VEVK E+ KK+ ++++E ED E+ ++D NE++G+ E
Sbjct: 95 KEIVEVKEENIEDATEKGGEKKEAVAAEVKNE--EEDQKED----EEDQNEEKGEAGKE- 147
Query: 270 IKDDEKEAEEGEDDRDSTNGQDDS 293
DEK E+G++D++ +D+
Sbjct: 148 -DKDEKGEEDGKEDKNGNEKGEDA 170
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
++FIG LNT +K+ +E +F KYG+I + K GFAFV ++ +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
+G+ + + + + A +P RG G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
++FIG LNT +K+ +E +F KYG+I + K GFAFV ++ +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
+G+ + + + + A +P RG G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,260,510
Number of Sequences: 37866
Number of extensions: 548569
Number of successful extensions: 10299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 832
Number of HSP's that attempted gapping in prelim test: 4704
Number of HSP's gapped (non-prelim): 4349
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.