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Search of human proteins with 61743957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens] 518 e-147
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly... 91 9e-19
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly... 88 6e-18
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly... 88 7e-18
gi|10190700 activation-induced cytidine deaminase [Homo sapiens] 86 3e-17
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol... 84 8e-17
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly... 83 2e-16
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly... 71 9e-13
gi|21955158 phorbolin 1 [Homo sapiens] 71 9e-13
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp... 64 1e-10
gi|44888831 apolipoprotein B [Homo sapiens] 31 0.81
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 30 1.8
gi|55925608 kelch-like 21 [Homo sapiens] 29 4.0
gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens] 28 6.9
>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
Length = 236
Score = 518 bits (1334), Expect = e-147
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKWGMSRKIWRSSGKNTTN 60
MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKWGMSRKIWRSSGKNTTN
Sbjct: 1 MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKWGMSRKIWRSSGKNTTN 60
Query: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120
HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF
Sbjct: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120
Query: 121 WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYAL 180
WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYAL
Sbjct: 121 WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYAL 180
Query: 181 ELHCIILSLPPCLKISRRWQNHLTFFRLHLQNCHYQTIPPHILLATGLIHPSVAWR 236
ELHCIILSLPPCLKISRRWQNHLTFFRLHLQNCHYQTIPPHILLATGLIHPSVAWR
Sbjct: 181 ELHCIILSLPPCLKISRRWQNHLTFFRLHLQNCHYQTIPPHILLATGLIHPSVAWR 236
>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3B [Homo sapiens]
Length = 382
Score = 90.9 bits (224), Expect = 9e-19
Identities = 58/162 (35%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 11 DPTLRRRIEPWEFDVFYDPREL------RKEACLLYE--IKWGMSRKIWRSS---GK--- 56
+P +R +E D FYD E R L YE IK G S +W + G+
Sbjct: 2 NPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYF 61
Query: 57 NTTNHVEVNFIKKFTSERDFHPSMSC-SITWFLSWSPCWECSQAIREFLSRHPGVTLVIY 115
H E+ F+ F + P+ C ITWF+SW+PC +C + EFLS HP VTL I
Sbjct: 62 KPQYHAEMCFLSWFCGNQ--LPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 119
Query: 116 VARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
ARL+++ ++ R+ L L +G + IM E+ +CW NFV
Sbjct: 120 AARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFV 161
Score = 66.2 bits (160), Expect = 2e-11
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPC--WECSQAIREFLSRHPGVTLVIYVAR 118
H E+ F+ S + P+ +TWF+SWSPC W C+ +R FL + V L I+ AR
Sbjct: 253 HAELRFLDLVPSLQ-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 311
Query: 119 LFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
++ D ++ L+ L ++G + IM E+ +CW FV
Sbjct: 312 IY-DYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFV 349
>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3G [Homo sapiens]
Length = 384
Score = 88.2 bits (217), Expect = 6e-18
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 33 RKEACLLYEIKW-GMSR-----KIWRSSGKNTTN-HVEVNFIKKFTSERDFHPSMSCSIT 85
R L YE+K G SR KI+R + H E+ F F+ R H +T
Sbjct: 30 RNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVT 89
Query: 86 WFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNS----GVTI 141
W++SWSPC +C++ + FL+ P VTL I+VARL++ D ++ LR L T+
Sbjct: 90 WYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATM 149
Query: 142 QIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYAL 180
+IM E+ HCW FV W P +++L+ +
Sbjct: 150 KIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIM 188
Score = 73.2 bits (178), Expect = 2e-13
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 19 EPW-----EFDVFYDPRELRKEACLLYEIKWG-MSRKIWRSSGKNTTNHVEVNFIK---- 68
EPW E + Y+ + + +L + G + + G H E+ F+
Sbjct: 209 EPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPF 268
Query: 69 -KFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQN 127
K ++D+ +T F SWSPC+ C+Q + +F+S++ V+L I+ AR++ D Q
Sbjct: 269 WKLDLDQDYR------VTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY---DDQG 319
Query: 128 R--QGLRDLVNSGVTIQIMRASEYYHCWRNFVNY 159
R +GLR L +G I IM SE+ HCW FV++
Sbjct: 320 RCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDH 353
>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3F isoform a [Homo sapiens]
Length = 373
Score = 87.8 bits (216), Expect = 7e-18
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 42 IKWGMSRKIWRSSGKNTTN-HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAI 100
+ W R ++R+ T+ H E F+ F + P+ + +TW+ SWSPC EC+ +
Sbjct: 231 VSW--KRGVFRNQVDPETHCHAERCFLSWFCDDI-LSPNTNYEVTWYTSWSPCPECAGEV 287
Query: 101 REFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
EFL+RH V L I+ ARL++ D ++GLR L G +++IM ++ +CW NFV
Sbjct: 288 AEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFV 344
Score = 86.3 bits (212), Expect = 2e-17
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 10/133 (7%)
Query: 33 RKEACLLYEIKW-GMSR-----KIWRSSG-KNTTNHVEVNFIKKFTSERDFHPSMSC-SI 84
R L YE+K G SR KI+R +H E+ F+ F + P+ C I
Sbjct: 30 RNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQ--LPAYKCFQI 87
Query: 85 TWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIM 144
TWF+SW+PC +C + EFL+ HP VTL I ARL+++ ++ R+ L L +G ++IM
Sbjct: 88 TWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIM 147
Query: 145 RASEYYHCWRNFV 157
E+ +CW NFV
Sbjct: 148 DDEEFAYCWENFV 160
>gi|10190700 activation-induced cytidine deaminase [Homo sapiens]
Length = 198
Score = 85.9 bits (211), Expect = 3e-17
Identities = 39/98 (39%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120
HVE+ F++ + S+ D P +TWF SWSPC++C++ + +FL +P ++L I+ ARL+
Sbjct: 56 HVELLFLR-YISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLY 114
Query: 121 WHMDQQ-NRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
+ D++ +GLR L +GV I IM +Y++CW FV
Sbjct: 115 FCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFV 152
>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3D [Homo sapiens]
Length = 386
Score = 84.3 bits (207), Expect = 8e-17
Identities = 57/173 (32%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 11 DPTLRRRIEPWEFDVFYDPREL------RKEACLLYE--IKWGMSRKIW----------- 51
+P +R +E D FYD E R L YE IK G S +W
Sbjct: 2 NPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLP 61
Query: 52 -RSSGKNTT------NHVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFL 104
R S NH E+ F+ F R + ITWF+SW+PC C + +FL
Sbjct: 62 KRQSNHRQEVYFRFENHAEMCFLSWFCGNR-LPANRRFQITWFVSWNPCLPCVVKVTKFL 120
Query: 105 SRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
+ HP VTL I ARL+++ D+ R L L +G ++IM ++ +CW NFV
Sbjct: 121 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFV 173
Score = 82.0 bits (201), Expect = 4e-16
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120
H E F+ F + P+ + +TW+ SWSPC EC+ + EFL+RH V L I+ ARL
Sbjct: 262 HAERCFLSWFCDDI-LSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLC 320
Query: 121 WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
+ D ++GL L G +++IM ++ CW+NFV
Sbjct: 321 YFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFV 357
>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3C [Homo sapiens]
Length = 190
Score = 82.8 bits (203), Expect = 2e-16
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120
H E F+ F + P+ +TW+ SWSPC +C+ + EFL+RH V L I+ ARL+
Sbjct: 66 HAERCFLSWFCDDI-LSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLY 124
Query: 121 WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157
+ ++GLR L GV ++IM ++ +CW NFV
Sbjct: 125 YFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFV 161
>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3H [Homo sapiens]
Length = 183
Score = 70.9 bits (172), Expect = 9e-13
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 61 HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120
H E+ FI + S + +T +L+WSPC C+ + +F+ H + L I+ +RL+
Sbjct: 54 HAEICFINEIKS-MGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLY 112
Query: 121 WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNY 159
+H + ++GLR L S V +++M E+ CW NFV++
Sbjct: 113 YHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDH 151
>gi|21955158 phorbolin 1 [Homo sapiens]
Length = 199
Score = 70.9 bits (172), Expect = 9e-13
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 4 EKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEI---------KWGMSRKIWRSS 54
E P++G R ++P F ++ R + L YE+ K R +
Sbjct: 2 EASPASGP---RHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQ 58
Query: 55 GKNTT-----NHVEVNFIKKFTSERDFHPSMSCSITWFLSWSPC--WECSQAIREFLSRH 107
KN H E+ F+ S + P+ +TWF+SWSPC W C+ +R FL +
Sbjct: 59 AKNLLCGFYGRHAELRFLDLVPSLQ-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN 117
Query: 108 PGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNY 159
V L I+ AR++ + D ++ L+ L ++G + IM E+ HCW FV++
Sbjct: 118 THVRLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDH 168
>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 2 [Homo sapiens]
Length = 224
Score = 63.5 bits (153), Expect = 1e-10
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 76 FHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLV 135
F P++ ++TW++S SPC C+ I + LS+ + L+I V RLF + + + L+ L
Sbjct: 111 FDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLK 170
Query: 136 NSGVTIQIMRASEYYHCWRNFVNYPPGD 163
+G ++IM+ ++ + W+NFV G+
Sbjct: 171 EAGCKLRIMKPQDFEYVWQNFVEQEEGE 198
>gi|44888831 apolipoprotein B [Homo sapiens]
Length = 367
Score = 31.2 bits (69), Expect = 0.81
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 91 SPCWE----CSQAIREFLSRHPGVTLVIYVARLFWHMDQQ------NRQGLRDLVN 136
SPC E C + FL +PG+TL IY ++L+ H + NR+ LR L +
Sbjct: 125 SPCNEANHCCISKMYNFLITYPGITLSIYFSQLY-HTEMDFPASAWNREALRSLAS 179
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 30.0 bits (66), Expect = 1.8
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 27 YDP--RELRKEACLL-YEIKWGMSRKIWRSSGKNTTNHVEVNFIKKFTSERDFHPSMSCS 83
+DP R+ ++ C+L +E + + S K + +EV K SER F +C+
Sbjct: 204 FDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCN 263
Query: 84 ITWFLSWSPCWECSQAIREFLSRHPGVTLVI---YVARLFWHMDQQNRQGLRDLVNSGV 139
T+ LS W C++ + + VI + ++W DQ + L + G+
Sbjct: 264 HTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGM 322
>gi|55925608 kelch-like 21 [Homo sapiens]
Length = 597
Score = 28.9 bits (63), Expect = 4.0
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 93 CWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHC 152
C + A + F+ RH G + RL + LR L + G+ + A+ Y
Sbjct: 150 CSGLASAAQRFILRHVGELGAEQLERL------PLARLLRYLRDDGLCVPKEEAA-YQLA 202
Query: 153 WRNFVNYPPGDEAHWPQ--------YPPLWMMLYALELHCIILSLPPCLKISR 197
R PP AHWPQ + + +L +E ++ PPCL++ R
Sbjct: 203 LRWVRADPPRRAAHWPQLLEAVRLPFVRRFYLLAHVEAEPLVARCPPCLRLLR 255
>gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 6.9
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 87 FLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQ----------NRQGLRDLVN 136
F+ W W S ++ + +LV+ L W +D ++QGL + N
Sbjct: 286 FIQWGLAWLDSVFDLVMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSN 345
Query: 137 SGVTIQIMRASEYYHCWRN 155
SG+T + + + W N
Sbjct: 346 SGLTAEDRQLTARARAWNN 364
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,758,634
Number of Sequences: 37866
Number of extensions: 469795
Number of successful extensions: 1109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 18
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.