Search of human proteins with 59859885

Search of human proteins with 59859885

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|59859885 ribosomal protein SA [Homo sapiens]
         (295 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9845502 ribosomal protein SA [Homo sapiens]                        602   e-172
gi|59859885 ribosomal protein SA [Homo sapiens]                       602   e-172
gi|239755020 PREDICTED: similar to solute carrier family 4 (anio...    35   0.079
gi|239749546 PREDICTED: similar to solute carrier family 4 (anio...    35   0.079
gi|239743698 PREDICTED: hypothetical protein XP_002342928 [Homo ...    35   0.079
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ...    33   0.39 
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              32   0.87 
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac...    31   1.1  
gi|133778961 testis expressed 15 [Homo sapiens]                        31   1.5  
gi|224282153 angel homolog 1 [Homo sapiens]                            30   1.9  
gi|155722990 solute carrier family 4 (anion exchanger), member 1...    30   1.9  
gi|124244056 family with sequence similarity 123B [Homo sapiens]       30   2.5  
gi|4502805 chromogranin A precursor [Homo sapiens]                     30   2.5  
gi|239756347 PREDICTED: similar to taste receptor protein 1 [Hom...    30   2.5  
gi|239750872 PREDICTED: similar to taste receptor protein 1 [Hom...    30   2.5  
gi|115430243 SCY1-like 1 isoform B [Homo sapiens]                      30   2.5  
gi|115430241 SCY1-like 1 isoform A [Homo sapiens]                      30   2.5  
gi|46852392 chromobox homolog 6 [Homo sapiens]                         29   4.3  
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]         29   5.6  
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi...    29   5.6  
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]             29   5.6  
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]             29   5.6  
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun...    28   7.4  
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun...    28   7.4  
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit...    28   7.4  
gi|226693407 TBC1 domain family, member 3H [Homo sapiens]              28   7.4  
gi|149999613 TBC1 domain family, member 3B [Homo sapiens]              28   7.4  
gi|183583563 TBC1 domain family, member 3D [Homo sapiens]              28   7.4  
gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]    28   7.4  
gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]    28   7.4  

>gi|9845502 ribosomal protein SA [Homo sapiens]
          Length = 295

 Score =  602 bits (1552), Expect = e-172
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
           MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1   MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60

Query: 61  AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
           AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61  AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
           LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180

Query: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
           EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240

Query: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
           TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295


>gi|59859885 ribosomal protein SA [Homo sapiens]
          Length = 295

 Score =  602 bits (1552), Expect = e-172
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
           MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1   MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60

Query: 61  AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
           AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61  AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
           LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180

Query: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
           EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240

Query: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
           TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295


>gi|239755020 PREDICTED: similar to solute carrier family 4 (anion
           exchanger), member 1, adaptor protein [Homo sapiens]
          Length = 210

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 184 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQ------GEWTAPAPE 237
           R  G +  +HP E+ P L   +D  E+E+EE+   E+   KEE +      G  + P PE
Sbjct: 12  RTAGKLPPKHP-ELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPE 70

Query: 238 FTATQPEVA 246
               QPE A
Sbjct: 71  I---QPEAA 76


>gi|239749546 PREDICTED: similar to solute carrier family 4 (anion
           exchanger), member 1, adaptor protein [Homo sapiens]
          Length = 210

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 184 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQ------GEWTAPAPE 237
           R  G +  +HP E+ P L   +D  E+E+EE+   E+   KEE +      G  + P PE
Sbjct: 12  RTAGKLPPKHP-ELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPE 70

Query: 238 FTATQPEVA 246
               QPE A
Sbjct: 71  I---QPEAA 76


>gi|239743698 PREDICTED: hypothetical protein XP_002342928 [Homo
           sapiens]
          Length = 210

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 184 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQ------GEWTAPAPE 237
           R  G +  +HP E+ P L   +D  E+E+EE+   E+   KEE +      G  + P PE
Sbjct: 12  RTAGKLPPKHP-ELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPE 70

Query: 238 FTATQPEVA 246
               QPE A
Sbjct: 71  I---QPEAA 76


>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
           sapiens]
          Length = 211

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 80  RNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA 129
           R +G+RA        GAT   GR++ G+   + +  +R  RLL   DPRA
Sbjct: 51  RRSGERASPARRRGPGATTRPGRWSLGSVFRKGEGTWRRRRLLAAADPRA 100


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 192  EHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQP--EVADWS 249
            E  WEV P+      PE  EKE Q   E +V   E +GE   P  E    Q   E A  +
Sbjct: 1894 EAEWEVQPESEGAEAPEA-EKEAQPETE-SVEALETEGE-DEPESEGAEAQEAEEAAQEA 1950

Query: 250  EGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATE 286
            EG   P   + +    +  AQP +ED  A      T+
Sbjct: 1951 EGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQ 1987


>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform b [Homo sapiens]
          Length = 7968

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 233  APAPEFTATQPEVADWSEGVQV-PSVP---IQQFPTEDWSAQPATEDWSAAPTAQATEWV 288
            APA + T +QP V   SE   V P VP   + + P ++  A    ++W+     +   W 
Sbjct: 6261 APALQETGSQPPVTGTSEAPAVPPRVPQPLLHEGPEQEPEAIARAQEWTVPIRMEGAAWP 6320

Query: 289  GATT 292
            GA T
Sbjct: 6321 GAGT 6324


>gi|133778961 testis expressed 15 [Homo sapiens]
          Length = 2789

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 98   PIAGRFTP--GTFTNQIQAA-FREPRLLVVTDPRADHQPLTEASYVNLP 143
            P A  F P  G F +QI A+ FR+P    +    A HQPL +A+Y  LP
Sbjct: 2721 PQANGFVPVNGYFQSQIPASNFRQP----IFSQYASHQPLPQATYPYLP 2765


>gi|224282153 angel homolog 1 [Homo sapiens]
          Length = 670

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 214 EQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPAT 273
           E    E  +  E  +G   A  P    ++P+ AD +      ++P+    TE W   PA 
Sbjct: 129 EMLGEEPLLEVEGVEGSMWAAIP--MQSEPQYADCA------ALPVGALATEQWEEDPAV 180

Query: 274 EDWSAAP 280
             WS AP
Sbjct: 181 LAWSIAP 187


>gi|155722990 solute carrier family 4 (anion exchanger), member 1,
           adaptor protein [Homo sapiens]
          Length = 796

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 187 GTISREHPW--EVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQ------GEWTAPAPEF 238
           GT+ +  P   E+ P L   +D  E+E+EE+   E+   KEE +      G  + P PE 
Sbjct: 622 GTVGKLPPKRPELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPEI 681

Query: 239 TATQPEVA 246
              +PE A
Sbjct: 682 ---EPEAA 686


>gi|124244056 family with sequence similarity 123B [Homo sapiens]
          Length = 1135

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 204 YRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVA-DWSEGVQVPSVPIQQF 262
           Y + +E++ +++ + E+   +EE +GEW+  +P    T+P  A DW      P +P+   
Sbjct: 915 YLESDELQAQQEDSDEE--DEEEEEGEWSRDSPLSLYTEPPGAYDWPAWAPCP-LPVGPG 971

Query: 263 PTEDW-SAQPATEDWSAAPTAQAT 285
           P   W S        S +P  QAT
Sbjct: 972 PA--WISPNQLDRPSSQSPYRQAT 993


>gi|4502805 chromogranin A precursor [Homo sapiens]
          Length = 457

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 186 RGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEE 226
           +G + RE      P     R+ EE E+EE  A E+AV +EE
Sbjct: 208 QGLVDREKGLSAEPGWQAKREEEEEEEEEAEAGEEAVPEEE 248


>gi|239756347 PREDICTED: similar to taste receptor protein 1 [Homo
           sapiens]
          Length = 562

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 235 APEFTATQPEVADWSEGVQVP-----SVPIQQFPTEDWSAQPATEDWSAAPTAQATEW 287
           +PEF A Q ++  W   +  P      V +++FP E  +A+     + AAP AQA  W
Sbjct: 268 SPEFWALQGQLTRWLNFILRPLQNFDQVVVEEFPPEPLTARMGATFFRAAP-AQALMW 324


>gi|239750872 PREDICTED: similar to taste receptor protein 1 [Homo
           sapiens]
          Length = 562

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 235 APEFTATQPEVADWSEGVQVP-----SVPIQQFPTEDWSAQPATEDWSAAPTAQATEW 287
           +PEF A Q ++  W   +  P      V +++FP E  +A+     + AAP AQA  W
Sbjct: 268 SPEFWALQGQLTRWLNFILRPLQNFDQVVVEEFPPEPLTARMGATFFRAAP-AQALMW 324


>gi|115430243 SCY1-like 1 isoform B [Homo sapiens]
          Length = 791

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 209 EIEKEEQAAAEKAVTKEEFQGE-WTAPAPEFTATQPEVADWSEGVQVPSV--------PI 259
           E ++E++  AE + T + +  E W +   E  +   +  DWS G QV             
Sbjct: 609 ETQEEDKDTAEDSSTADRWDDEDWGSLEQEAESVLAQQDDWSTGGQVSRASQVSNSDHKS 668

Query: 260 QQFPTEDWSAQPATEDW 276
            + P  DWS+  A   W
Sbjct: 669 SKSPESDWSSWEAEGSW 685


>gi|115430241 SCY1-like 1 isoform A [Homo sapiens]
          Length = 808

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 209 EIEKEEQAAAEKAVTKEEFQGE-WTAPAPEFTATQPEVADWSEGVQVPSV--------PI 259
           E ++E++  AE + T + +  E W +   E  +   +  DWS G QV             
Sbjct: 626 ETQEEDKDTAEDSSTADRWDDEDWGSLEQEAESVLAQQDDWSTGGQVSRASQVSNSDHKS 685

Query: 260 QQFPTEDWSAQPATEDW 276
            + P  DWS+  A   W
Sbjct: 686 SKSPESDWSSWEAEGSW 702


>gi|46852392 chromobox homolog 6 [Homo sapiens]
          Length = 412

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 194 PWEVMPDLYFYRDPEEIEKE---EQAAAEKA----VTKEEFQGEWTAPAPEFTATQPEVA 246
           P  V P    +R+PE ++     E AA  K     VT        TAP P   +++PE  
Sbjct: 297 PETVSPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAG 356

Query: 247 DW 248
           DW
Sbjct: 357 DW 358


>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
          Length = 1054

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 206 DPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADW 248
           D E++EK   A  E  + K+  + E T P  +    +PEVA W
Sbjct: 640 DDEDMEKFTDADKETEIVKK-LETEETVPETDVETKKPEVASW 681


>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
          Length = 1790

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 206  DPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQ----- 260
            +P+E +KE +   E+   +EE     + PAP   +T PE  D  E     S  ++     
Sbjct: 1685 EPQEEQKEPKMEEEEHSEEEE-----SGPAPVEESTDPEAQDIPEEGSAESASVEGGVES 1739

Query: 261  QFPTEDWSAQPATEDWSAAP 280
            +  +E  S+  ++E  S  P
Sbjct: 1740 EEESESGSSSSSSESQSGGP 1759


>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
          Length = 888

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 208 EEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDW 267
           +E EKE +   EKA   E       A  P   AT P   + S     PSVP     TE+ 
Sbjct: 125 KEKEKEREKEKEKATVSENVAASAAATTP---ATSPPAVNTS-----PSVPTTTTATEEQ 176

Query: 268 SAQP 271
            ++P
Sbjct: 177 VSEP 180


>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
          Length = 948

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 208 EEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDW 267
           +E EKE +   EKA   E       A  P   AT P   + S     PSVP     TE+ 
Sbjct: 125 KEKEKEREKEKEKATVSENVAASAAATTP---ATSPPAVNTS-----PSVPTTTTATEEQ 176

Query: 268 SAQP 271
            ++P
Sbjct: 177 VSEP 180


>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
           12A isoform b [Homo sapiens]
          Length = 943

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 206 DPEEIEKEEQAAAEK-----AVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQ 260
           + EE + E +A  +K     +VT         AP      T P V   S G   P+ PI+
Sbjct: 272 EDEEDDSESEAETDKTKPLASVTNANTSSTQAAPV---AVTTPTV---SSGQATPTSPIK 325

Query: 261 QFPTEDWSAQPATED 275
           +FPT      P  E+
Sbjct: 326 KFPTTATKISPKEEE 340


>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
           12A isoform a [Homo sapiens]
          Length = 1030

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 206 DPEEIEKEEQAAAEK-----AVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQ 260
           + EE + E +A  +K     +VT         AP      T P V   S G   P+ PI+
Sbjct: 359 EDEEDDSESEAETDKTKPLASVTNANTSSTQAAPV---AVTTPTV---SSGQATPTSPIK 412

Query: 261 QFPTEDWSAQPATED 275
           +FPT      P  E+
Sbjct: 413 KFPTTATKISPKEEE 427


>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
           12A isoform a [Homo sapiens]
          Length = 1030

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 206 DPEEIEKEEQAAAEK-----AVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQ 260
           + EE + E +A  +K     +VT         AP      T P V   S G   P+ PI+
Sbjct: 359 EDEEDDSESEAETDKTKPLASVTNANTSSTQAAPV---AVTTPTV---SSGQATPTSPIK 412

Query: 261 QFPTEDWSAQPATED 275
           +FPT      P  E+
Sbjct: 413 KFPTTATKISPKEEE 427


>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
          Length = 549

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 190 SREHPWEVMPDLY---FYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA-PEFTATQPEV 245
           SR  PW    + +   + RD + + K  +A+ +K   K   QG+   PA PE  ++    
Sbjct: 316 SRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRK---QGDLPPPAKPEQGSSASRP 372

Query: 246 ADWSEGV--------QVPSVPIQQFPTEDWSAQPATEDWSAAP 280
              S G         Q P  P  +FP   WSA P     S+ P
Sbjct: 373 VPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTP 415


>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
          Length = 549

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 190 SREHPWEVMPDLY---FYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA-PEFTATQPEV 245
           SR  PW    + +   + RD + + K  +A+ +K   K   QG+   PA PE  ++    
Sbjct: 316 SRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRK---QGDLPPPAKPEQGSSASRP 372

Query: 246 ADWSEGV--------QVPSVPIQQFPTEDWSAQPATEDWSAAP 280
              S G         Q P  P  +FP   WSA P     S+ P
Sbjct: 373 VPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTP 415


>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
          Length = 549

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 190 SREHPWEVMPDLY---FYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA-PEFTATQPEV 245
           SR  PW    + +   + RD + + K  +A+ +K   K   QG+   PA PE  ++    
Sbjct: 316 SRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRK---QGDLPPPAKPEQGSSASRP 372

Query: 246 ADWSEGV--------QVPSVPIQQFPTEDWSAQPATEDWSAAP 280
              S G         Q P  P  +FP   WSA P     S+ P
Sbjct: 373 VPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTP 415


>gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]
          Length = 452

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 23/99 (23%)

Query: 188 TISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVAD 247
           T++     +++ ++ FYR+ E+ E+EE    EK     E +GE    A E         +
Sbjct: 311 TVNLNREEKIIREIDFYREDEDEEEEEGGEGEK-----EGEGEVGGEAVE--------VE 357

Query: 248 WSEGVQVPSVPIQQFPTEDWSAQPATE----DWSAAPTA 282
             E VQ       +FP ED + + A+E    +  AAP A
Sbjct: 358 EVENVQT------EFPGEDENPEKASELSQVELQAAPGA 390


>gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]
          Length = 548

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 23/99 (23%)

Query: 188 TISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVAD 247
           T++     +++ ++ FYR+ E+ E+EE    EK     E +GE    A E         +
Sbjct: 311 TVNLNREEKIIREIDFYREDEDEEEEEGGEGEK-----EGEGEVGGEAVE--------VE 357

Query: 248 WSEGVQVPSVPIQQFPTEDWSAQPATE----DWSAAPTA 282
             E VQ       +FP ED + + A+E    +  AAP A
Sbjct: 358 EVENVQT------EFPGEDENPEKASELSQVELQAAPGA 390


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,880,008
Number of Sequences: 37866
Number of extensions: 545404
Number of successful extensions: 1671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 49
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.