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Search of human proteins with 57863259
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57863259 T-complex protein 1 isoform b [Homo sapiens]
(401 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57863259 T-complex protein 1 isoform b [Homo sapiens] 773 0.0
gi|57863257 T-complex protein 1 isoform a [Homo sapiens] 773 0.0
gi|5453607 chaperonin containing TCP1, subunit 7 isoform a [Homo... 189 3e-48
gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens] 175 6e-44
gi|58331185 chaperonin containing TCP1, subunit 7 isoform b [Hom... 173 3e-43
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom... 167 1e-41
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom... 167 1e-41
gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Hom... 167 1e-41
gi|48762932 chaperonin containing TCP1, subunit 8 (theta) [Homo ... 154 1e-37
gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo ... 152 4e-37
gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens] 145 6e-35
gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Hom... 144 2e-34
gi|58331171 chaperonin containing TCP1, subunit 6A isoform b [Ho... 142 7e-34
gi|4502643 chaperonin containing TCP1, subunit 6A isoform a [Hom... 142 7e-34
gi|7657253 T-complex protein 1 [Homo sapiens] 73 4e-13
gi|31543157 glycine-N-acyltransferase-like 1 [Homo sapiens] 33 0.60
gi|9055272 McKusick-Kaufman syndrome protein [Homo sapiens] 32 0.78
gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens] 32 0.78
gi|100816407 Bardet-Biedl syndrome 10 [Homo sapiens] 32 1.3
gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] 29 6.6
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 29 6.6
gi|46048234 nucleolar protein 8 [Homo sapiens] 29 6.6
>gi|57863259 T-complex protein 1 isoform b [Homo sapiens]
Length = 401
Score = 773 bits (1996), Expect = 0.0
Identities = 401/401 (100%), Positives = 401/401 (100%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60
MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA
Sbjct: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60
Query: 61 LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 120
LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI
Sbjct: 61 LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 120
Query: 121 QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE 180
QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE
Sbjct: 121 QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE 180
Query: 181 GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 240
GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA
Sbjct: 181 GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 240
Query: 241 LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 300
LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN
Sbjct: 241 LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 300
Query: 301 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK 360
AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK
Sbjct: 301 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK 360
Query: 361 FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND 401
FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND
Sbjct: 361 FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND 401
>gi|57863257 T-complex protein 1 isoform a [Homo sapiens]
Length = 556
Score = 773 bits (1996), Expect = 0.0
Identities = 401/401 (100%), Positives = 401/401 (100%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60
MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA
Sbjct: 156 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 215
Query: 61 LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 120
LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI
Sbjct: 216 LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 275
Query: 121 QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE 180
QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE
Sbjct: 276 QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE 335
Query: 181 GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 240
GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA
Sbjct: 336 GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 395
Query: 241 LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 300
LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN
Sbjct: 396 LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 455
Query: 301 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK 360
AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK
Sbjct: 456 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK 515
Query: 361 FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND 401
FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND
Sbjct: 516 FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND 556
>gi|5453607 chaperonin containing TCP1, subunit 7 isoform a [Homo
sapiens]
Length = 543
Score = 189 bits (481), Expect = 3e-48
Identities = 124/388 (31%), Positives = 204/388 (52%), Gaps = 25/388 (6%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60
+SSK+I FFA MVVDAV+ + + + I K G + +S L++G A
Sbjct: 163 LSSKLISQQKAFFAKMVVDAVMML-------DDLLQLKMIGIKKVQGGALEDSQLVAGVA 215
Query: 61 LN---CVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITK 117
G + PK+ N KIA L+ L+ K ++ + E I E +I
Sbjct: 216 FKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILY 275
Query: 118 ERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLA 177
++++KI +GA V+L+ I D+ +YF + RV + DLKR A G +I +++
Sbjct: 276 DKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVN 335
Query: 178 NLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSL 237
L + +LG+ + + +I + + + ILRG + +E ERSL
Sbjct: 336 ALSAD------VLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSL 389
Query: 238 HDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTL 297
HDA+ +V+R +++ SVV GGGA+E LS YL +Y+ ++ ++QL I +A++L +IP L
Sbjct: 390 HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL 449
Query: 298 AVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVK 357
NA D+T+++ KLRA H + W G+D++N DN +A V+EP +V++
Sbjct: 450 CDNAGFDATNILNKLRARHAQGGT--------WYGVDINNEDIADNFEAFVWEPAMVRIN 501
Query: 358 SLKFATEAAITILRIDDLIKLHPESKDD 385
+L A+EAA I+ +D+ IK +P S D
Sbjct: 502 ALTAASEAACLIVSVDETIK-NPRSTVD 528
>gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens]
Length = 535
Score = 175 bits (444), Expect = 6e-44
Identities = 123/388 (31%), Positives = 196/388 (50%), Gaps = 23/388 (5%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60
+SSK++ + D F + V+AVL +K + + +++I+K G S +S L G+
Sbjct: 167 LSSKLLTHHKDHFTKLAVEAVLRLKGSG-------NLEAIHIIKKLGGSLADSYLDEGFL 219
Query: 61 LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKER 119
L+ +G PKRI NAKI + + K+K+ G +V + K+ +I E + KE+
Sbjct: 220 LDKKIGVN-QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEK 278
Query: 120 IQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANL 179
+++IL G N + I + + F AG MA+ ++R+A +G I ST +
Sbjct: 279 VERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHP 338
Query: 180 EGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHD 239
E LG + + + I +D+LI + +I+LRGA + DE ERSLHD
Sbjct: 339 E------LVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHD 392
Query: 240 ALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 299
ALCV+ + ++ V GGG E ++ + A +E +A+ +A++L ++P +A
Sbjct: 393 ALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIAD 452
Query: 300 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSL 359
NA DS DLVA+LRA H+E GLD+ G D G+ E VK + L
Sbjct: 453 NAGYDSADLVAQLRAAHSEGNTT--------AGLDMREGTIGDMAILGITESFQVKRQVL 504
Query: 360 KFATEAAITILRIDDLIKLHPESKDDKH 387
A EAA ILR+D++IK P + H
Sbjct: 505 LSAAEAAEVILRVDNIIKAAPRKRVPDH 532
>gi|58331185 chaperonin containing TCP1, subunit 7 isoform b [Homo
sapiens]
Length = 339
Score = 173 bits (438), Expect = 3e-43
Identities = 109/338 (32%), Positives = 182/338 (53%), Gaps = 18/338 (5%)
Query: 51 MESMLISGYALN---CVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 107
M+S L++G A G + PK+ N KIA L+ L+ K ++ + E
Sbjct: 2 MDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQA 61
Query: 108 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 167
I E +I ++++KI +GA V+L+ I D+ +YF + RV + DLKR A
Sbjct: 62 IVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMA 121
Query: 168 SGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGAND 227
G +I +++ L + +LG+ + + +I + + + ILRG +
Sbjct: 122 CGGSIQTSVNALSAD------VLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAE 175
Query: 228 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFA 287
+E ERSLHDA+ +V+R +++ SVV GGGA+E LS YL +Y+ ++ ++QL I +A
Sbjct: 176 QFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYA 235
Query: 288 RSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAG 347
++L +IP L NA D+T+++ KLRA H + W G+D++N DN +A
Sbjct: 236 KALEIIPRQLCDNAGFDATNILNKLRARHAQGGT--------WYGVDINNEDIADNFEAF 287
Query: 348 VFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 385
V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 288 VWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 324
>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
sapiens]
Length = 544
Score = 167 bits (424), Expect = 1e-41
Identities = 121/396 (30%), Positives = 198/396 (50%), Gaps = 16/396 (4%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNS-VNILKAHGRSQMESMLISGY 59
+++K I N+ +DAV +++ + G+ + + K G +S ++ G
Sbjct: 159 ITTKAISRWSSLACNIALDAVKMVQFEE-NGRKEIDIKKYARVEKIPGGIIEDSCVLRGV 217
Query: 60 ALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKER 119
+N V M + I N +I LD SL+ K + + IT E +I Q E + ++
Sbjct: 218 MINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQL 277
Query: 120 IQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANL 179
+ I+ +V++T GI D+ Y + A A+RRV K D RIA+A GA I+S L
Sbjct: 278 CEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEEL 337
Query: 180 EGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHD 239
++ A L + + +I D+ I + K + +I+LRGA+ + E+ER+L D
Sbjct: 338 REDDVGTGAGLLEIK-----KIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQD 392
Query: 240 ALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 299
A+ V + VL +VPGGGA E A++ L + +M EQ A++L VIP TL
Sbjct: 393 AMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQ 452
Query: 300 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSL 359
N + L+ LRA H + +N + G++ G D K+ G++EP VK+++
Sbjct: 453 NCGASTIRLLTSLRAKHTQ-------ENCETWGVNGETGTLVDMKELGIWEPLAVKLQTY 505
Query: 360 KFATEAAITILRIDDLIKLHPESKDD--KHGSYEDA 393
K A E A+ +LRIDD++ H + DD + G DA
Sbjct: 506 KTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDA 541
>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
sapiens]
Length = 507
Score = 167 bits (424), Expect = 1e-41
Identities = 121/396 (30%), Positives = 198/396 (50%), Gaps = 16/396 (4%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNS-VNILKAHGRSQMESMLISGY 59
+++K I N+ +DAV +++ + G+ + + K G +S ++ G
Sbjct: 122 ITTKAISRWSSLACNIALDAVKMVQFEE-NGRKEIDIKKYARVEKIPGGIIEDSCVLRGV 180
Query: 60 ALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKER 119
+N V M + I N +I LD SL+ K + + IT E +I Q E + ++
Sbjct: 181 MINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQL 240
Query: 120 IQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANL 179
+ I+ +V++T GI D+ Y + A A+RRV K D RIA+A GA I+S L
Sbjct: 241 CEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEEL 300
Query: 180 EGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHD 239
++ A L + + +I D+ I + K + +I+LRGA+ + E+ER+L D
Sbjct: 301 REDDVGTGAGLLEIK-----KIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQD 355
Query: 240 ALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 299
A+ V + VL +VPGGGA E A++ L + +M EQ A++L VIP TL
Sbjct: 356 AMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQ 415
Query: 300 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSL 359
N + L+ LRA H + +N + G++ G D K+ G++EP VK+++
Sbjct: 416 NCGASTIRLLTSLRAKHTQ-------ENCETWGVNGETGTLVDMKELGIWEPLAVKLQTY 468
Query: 360 KFATEAAITILRIDDLIKLHPESKDD--KHGSYEDA 393
K A E A+ +LRIDD++ H + DD + G DA
Sbjct: 469 KTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDA 504
>gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Homo
sapiens]
Length = 545
Score = 167 bits (424), Expect = 1e-41
Identities = 121/396 (30%), Positives = 198/396 (50%), Gaps = 16/396 (4%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNS-VNILKAHGRSQMESMLISGY 59
+++K I N+ +DAV +++ + G+ + + K G +S ++ G
Sbjct: 160 ITTKAISRWSSLACNIALDAVKMVQFEE-NGRKEIDIKKYARVEKIPGGIIEDSCVLRGV 218
Query: 60 ALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKER 119
+N V M + I N +I LD SL+ K + + IT E +I Q E + ++
Sbjct: 219 MINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQL 278
Query: 120 IQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANL 179
+ I+ +V++T GI D+ Y + A A+RRV K D RIA+A GA I+S L
Sbjct: 279 CEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEEL 338
Query: 180 EGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHD 239
++ A L + + +I D+ I + K + +I+LRGA+ + E+ER+L D
Sbjct: 339 REDDVGTGAGLLEIK-----KIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQD 393
Query: 240 ALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 299
A+ V + VL +VPGGGA E A++ L + +M EQ A++L VIP TL
Sbjct: 394 AMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQ 453
Query: 300 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSL 359
N + L+ LRA H + +N + G++ G D K+ G++EP VK+++
Sbjct: 454 NCGASTIRLLTSLRAKHTQ-------ENCETWGVNGETGTLVDMKELGIWEPLAVKLQTY 506
Query: 360 KFATEAAITILRIDDLIKLHPESKDD--KHGSYEDA 393
K A E A+ +LRIDD++ H + DD + G DA
Sbjct: 507 KTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDA 542
>gi|48762932 chaperonin containing TCP1, subunit 8 (theta) [Homo
sapiens]
Length = 548
Score = 154 bits (390), Expect = 1e-37
Identities = 109/375 (29%), Positives = 183/375 (48%), Gaps = 23/375 (6%)
Query: 9 NGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYALNCVVGSQ 68
N F A ++ A ++I + V+++ + K G S ++ G ++
Sbjct: 175 NEVFLAKLIAQACVSI----FPDSGHFNVDNIRVCKILGSGISSSSVLHGMVFK--KETE 228
Query: 69 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGA 128
G + +AKIA + V+I E+L + E ++ +++ I TGA
Sbjct: 229 GDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGA 288
Query: 129 NVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAA 188
NV++T G + DM L Y + M VR K DL+R+ K GAT L L EE
Sbjct: 289 NVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEE----- 343
Query: 189 MLGQAEEVVQERICDDELILIKNTKARTSAS-IILRGANDFMCDEMERSLHDALCVVKRV 247
+G + V + D ++++ K+ K + S I+LRG+ D + D++ER++ D + K +
Sbjct: 344 -MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVL 402
Query: 248 LESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTD 307
K +VPGGGA E L+ + +Y + EQ AI +FA + IP LA N+ + +
Sbjct: 403 TRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANE 462
Query: 308 LVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKP--RDNKQAGVFEPTIVKVKSLKFATEA 365
+++KL A H E N +GLD+ P +D +AG+ + + K ++K AT A
Sbjct: 463 VISKLYAVHQEGNKN--------VGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNA 514
Query: 366 AITILRIDDLIKLHP 380
A+T+LR+D +I P
Sbjct: 515 AVTVLRVDQIIMAKP 529
>gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo
sapiens]
Length = 539
Score = 152 bits (385), Expect = 4e-37
Identities = 106/384 (27%), Positives = 196/384 (51%), Gaps = 26/384 (6%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60
++SK++ + M V+AV+ K D + + I+K G + + L+ G
Sbjct: 171 LNSKVVSQYSSLLSPMSVNAVM--KVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLV 228
Query: 61 LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 120
L V + G+ R+ AKI + F L K + Q+V++D ++D++ + E +
Sbjct: 229 LTQKVSNSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLV 287
Query: 121 QKILATGANVILTTGGI-----DDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILST 175
++I TG NV+L I D+ L + + M ++ + + D++ I K G ++
Sbjct: 288 KQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAH 347
Query: 176 LANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKART---SASIILRGANDFMCDE 232
+ + F A MLG AE + +E + L+K T + + +I++RG+N + +E
Sbjct: 348 I------DQFTADMLGSAE-LAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEE 400
Query: 233 MERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLV 292
ERS+HDALCV++ +++ ++++ GGGA E L++ L Y+ ++ E + FA ++ V
Sbjct: 401 AERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEV 460
Query: 293 IPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPT 352
IP+TLA NA + V +LR H + + K G+++ G + + V +P
Sbjct: 461 IPSTLAENAGLNPISTVTELRNRHAQGE--------KTAGINVRKGGISNILEELVVQPL 512
Query: 353 IVKVKSLKFATEAAITILRIDDLI 376
+V V +L ATE +IL+IDD++
Sbjct: 513 LVSVSALTLATETVRSILKIDDVV 536
>gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens]
Length = 530
Score = 145 bits (366), Expect = 6e-35
Identities = 100/388 (25%), Positives = 194/388 (50%), Gaps = 31/388 (7%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVN--SVNILKAHGRSQMESMLISG 58
+ +K+ D +VVD+VLA++ +P YP++ V I++ + ++ LI G
Sbjct: 156 LQTKVHAELADVLTEVVVDSVLAVR------RPGYPIDLFMVEIMEMKHKLGTDTKLIQG 209
Query: 59 YALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKE 118
L+ M KR+ +A I + SL+ K ++ E+ +++ + E ++
Sbjct: 210 LVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKLVKAERKFIED 269
Query: 119 RIQKIL---------ATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG 169
R+QKI+ + V++ GID L + G +A+RR +R+++R++ A G
Sbjct: 270 RVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRRNMERLSLACG 329
Query: 170 ATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFM 229
+++ +L + LG A V + + +++ I+ S +++++G N
Sbjct: 330 GMAVNSFEDLTVD------CLGHAGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHT 383
Query: 230 CDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARS 289
+++ ++ D L +K +E +VPG GA+E A++ L Y S+ R +L + FA +
Sbjct: 384 LTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADA 443
Query: 290 LLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVF 349
LL+IP LA NA D + + K++A H E++ + +G+DL+ G+P AGV+
Sbjct: 444 LLIIPKVLAQNAGYDPQETLVKVQAEHVESK--------QLVGVDLNTGEPMVAADAGVW 495
Query: 350 EPTIVKVKSLKFATEAAITILRIDDLIK 377
+ VK + L T A IL +D++++
Sbjct: 496 DNYCVKKQLLHSCTVIATNILLVDEIMR 523
>gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Homo
sapiens]
Length = 541
Score = 144 bits (362), Expect = 2e-34
Identities = 106/380 (27%), Positives = 186/380 (48%), Gaps = 20/380 (5%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGR---SQMESMLIS 57
+ SK++ A + V+AVL + + R ++K G+ ++ LI
Sbjct: 173 LGSKVVNSCHRQMAEIAVNAVLTVADMERRDV------DFELIKVEGKVGGRLEDTKLIK 226
Query: 58 GYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITK 117
G ++ MPK++ +AKIA L + K K ++ +T E +++ E + +
Sbjct: 227 GVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFE 286
Query: 118 ERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLA 177
E IQ+I TGAN+ + G DD ++ AVR V +++ IA A+G I+ +
Sbjct: 287 EMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFS 346
Query: 178 NLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSL 237
L E+ A ++ + + D++++I+ K + +I +RG N + +E +RSL
Sbjct: 347 ELTAEKLGFAGLVQE----ISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSL 402
Query: 238 HDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTL 297
HDALCV++ ++ VV GGGA E + ++ + A + EQ A+ FA +L VIP L
Sbjct: 403 HDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMAL 462
Query: 298 AVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVK 357
+ N+ + + ++RA ++NP +G+D + D KQ V E I K +
Sbjct: 463 SENSGMNPIQTMTEVRA-RQVKEMNPA------LGIDCLHKGTNDMKQQHVIETLIGKKQ 515
Query: 358 SLKFATEAAITILRIDDLIK 377
+ AT+ IL+IDD+ K
Sbjct: 516 QISLATQMVRMILKIDDIRK 535
>gi|58331171 chaperonin containing TCP1, subunit 6A isoform b [Homo
sapiens]
Length = 486
Score = 142 bits (357), Expect = 7e-34
Identities = 100/388 (25%), Positives = 191/388 (49%), Gaps = 31/388 (7%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVN--SVNILKAHGRSQMESMLISG 58
+ +K+ D VVD++LAIK D P++ + I++ +S+ ++ LI G
Sbjct: 111 LRTKVHAELADVLTEAVVDSILAIKKQD------EPIDLFMIEIMEMKHKSETDTSLIRG 164
Query: 59 YALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKE 118
L+ M KR+ +A I + SL+ K ++ E+ +++ + E ++
Sbjct: 165 LVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIED 224
Query: 119 RIQKILATGANV---------ILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG 169
R++KI+ V ++ GID L + G +A+RR +R+++R+ A G
Sbjct: 225 RVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACG 284
Query: 170 ATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFM 229
L++ +L + LG A V + + +++ I+ S +++++G N
Sbjct: 285 GVALNSFDDLSPD------CLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHT 338
Query: 230 CDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARS 289
+++ ++ D L VK ++ VVPG GAVE A++ L + S+ R QL + FA +
Sbjct: 339 LTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADA 398
Query: 290 LLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVF 349
LL+IP LA N+ D + + K++A H+E+ + +G+DL+ G+P + GV+
Sbjct: 399 LLIIPKVLAQNSGFDLQETLVKIQAEHSESG--------QLVGVDLNTGEPMVAAEVGVW 450
Query: 350 EPTIVKVKSLKFATEAAITILRIDDLIK 377
+ VK + L T A IL +D++++
Sbjct: 451 DNYCVKKQLLHSCTVIATNILLVDEIMR 478
>gi|4502643 chaperonin containing TCP1, subunit 6A isoform a [Homo
sapiens]
Length = 531
Score = 142 bits (357), Expect = 7e-34
Identities = 100/388 (25%), Positives = 191/388 (49%), Gaps = 31/388 (7%)
Query: 1 MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVN--SVNILKAHGRSQMESMLISG 58
+ +K+ D VVD++LAIK D P++ + I++ +S+ ++ LI G
Sbjct: 156 LRTKVHAELADVLTEAVVDSILAIKKQD------EPIDLFMIEIMEMKHKSETDTSLIRG 209
Query: 59 YALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKE 118
L+ M KR+ +A I + SL+ K ++ E+ +++ + E ++
Sbjct: 210 LVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIED 269
Query: 119 RIQKILATGANV---------ILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG 169
R++KI+ V ++ GID L + G +A+RR +R+++R+ A G
Sbjct: 270 RVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACG 329
Query: 170 ATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFM 229
L++ +L + LG A V + + +++ I+ S +++++G N
Sbjct: 330 GVALNSFDDLSPD------CLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHT 383
Query: 230 CDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARS 289
+++ ++ D L VK ++ VVPG GAVE A++ L + S+ R QL + FA +
Sbjct: 384 LTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADA 443
Query: 290 LLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVF 349
LL+IP LA N+ D + + K++A H+E+ + +G+DL+ G+P + GV+
Sbjct: 444 LLIIPKVLAQNSGFDLQETLVKIQAEHSESG--------QLVGVDLNTGEPMVAAEVGVW 495
Query: 350 EPTIVKVKSLKFATEAAITILRIDDLIK 377
+ VK + L T A IL +D++++
Sbjct: 496 DNYCVKKQLLHSCTVIATNILLVDEIMR 523
>gi|7657253 T-complex protein 1 [Homo sapiens]
Length = 557
Score = 73.2 bits (178), Expect = 4e-13
Identities = 72/367 (19%), Positives = 155/367 (42%), Gaps = 24/367 (6%)
Query: 11 DFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYALNCVVGSQGM 70
D +V A AIK D +P V + G + +S L+ G A++ + Q M
Sbjct: 178 DHLTKLVAHACWAIKELDGSFKPE----RVGVCALPGGTLEDSCLLPGLAISGKLCGQ-M 232
Query: 71 PKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANV 130
+ A++A ++ P L Q + + ++++ ++ A G NV
Sbjct: 233 ATVLSGARVALFACPFGPAHPNAPATARLSSPADLAQFSKGSDQLLEKQVGQLAAAGINV 292
Query: 131 ILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAML 190
+ G +D+ L + G + ++ ++ +++ +L L +
Sbjct: 293 AVVLGEVDEETLTLADKYGIVVIQARSWMEIIYLSEVLDTPLLPRLLPPQRP-------- 344
Query: 191 GQAEEVVQERICDDELILIKNTKARTSA-SIILRGANDFMCDEMERSLHDALCVVKRVLE 249
G+ + V ++ + D ++ + T A +++LRGA E++++ + ++ +
Sbjct: 345 GKCQRVYRQELGDGLAVVFEWECTGTPALTVVLRGATTQGLRSAEQAVYHGIDAYFQLCQ 404
Query: 250 SKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLV 309
++PG GA E AL+ L + + + A FA +L +P TLA NA +D++
Sbjct: 405 DPRLIPGAGATEMALAKMLSDKGSRLEGPSGPAFLAFAWALKYLPKTLAENAGLAVSDVM 464
Query: 310 AKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITI 369
A++ H + L +G + + Q GV++ IVK + + E + +
Sbjct: 465 AEMSGVHQGGNL------LMGVGTE----GIINVAQEGVWDTLIVKAQGFRAVAEVVLQL 514
Query: 370 LRIDDLI 376
+ +D+++
Sbjct: 515 VTVDEIV 521
>gi|31543157 glycine-N-acyltransferase-like 1 [Homo sapiens]
Length = 333
Score = 32.7 bits (73), Expect = 0.60
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 220 IILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSRE 279
+I+R M D+M+ + K +S+ V+ V + ++ S+G E
Sbjct: 86 VIIRPQKQEMTDDMDSYTNVYRMFSKEPQKSEEVLKNCEIVNWKQRLQIQGLQESLG--E 143
Query: 280 QLAIAEFARS---------LLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 330
+ +A F++S LLV + L +NA+ S L + H + + E N K+
Sbjct: 144 GIRVATFSKSVKVEHSRALLLVTEDILKLNASSKSK-LGSWAETGHPDDEFESETPNFKY 202
Query: 331 IGLDLS-NGKPRDNKQAGVFEPTIVKVK 357
LD+S +G DN + G E ++ +K
Sbjct: 203 AQLDVSYSGLVNDNWKRGKNERSLHYIK 230
>gi|9055272 McKusick-Kaufman syndrome protein [Homo sapiens]
Length = 570
Score = 32.3 bits (72), Expect = 0.78
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 216 TSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLEN 270
T S++L ND DE++ + AL V++ L+ + GGG E L+ Y+ +
Sbjct: 369 TICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRH 423
>gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens]
Length = 570
Score = 32.3 bits (72), Expect = 0.78
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 216 TSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLEN 270
T S++L ND DE++ + AL V++ L+ + GGG E L+ Y+ +
Sbjct: 369 TICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRH 423
>gi|100816407 Bardet-Biedl syndrome 10 [Homo sapiens]
Length = 723
Score = 31.6 bits (70), Expect = 1.3
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 21/132 (15%)
Query: 253 VVPGGGAVEAALSIYLENYATSMGSREQLAIAE-FARSLLVIPNTLAVNAAQDSTDLVAK 311
V+P GG E L YL NYA E+ ++ A +LL IP L + +
Sbjct: 599 VLPVGGNFEILLHYYLLNYAKKCHQSEETMVSMIIANALLGIPKVLYKSKTGKYSFPHTY 658
Query: 312 LRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILR 371
+RA H L +P + Q G+ E + K + L + IL
Sbjct: 659 IRAVH-----------------ALQTNQPLVSSQTGL-ESVMGKYQLLTSVLQCLTKILT 700
Query: 372 IDDLI--KLHPE 381
ID +I K HP+
Sbjct: 701 IDMVITVKRHPQ 712
>gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens]
Length = 1453
Score = 29.3 bits (64), Expect = 6.6
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 45 AHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL----------- 93
AH R ++E ++I Y GS G K + + I L+ ++ + + +L
Sbjct: 1227 AHERIRLEQLIIDSYEKQQAQGS-GRKKLLSSTLIPPLEITVTEEQRRLLWCYHKNLEDL 1285
Query: 94 GVQVVITDPE----------------KLDQIRQRESDITKERIQKILATGANVILTTGGI 137
G++ V D + +++R+ S +TK +++ + ++ TTGGI
Sbjct: 1286 GLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGGI 1345
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 29.3 bits (64), Expect = 6.6
Identities = 33/174 (18%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 168 SGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGAND 227
+G ++ T ++ +++ E A + ++++ +CD E ++ K+ S S +L ++
Sbjct: 1470 AGLPVIKTSSSQHSDKS-EEARVEDKQDLLFSTVCDSERLVSSQKKSLMSTSEVLEPEHE 1528
Query: 228 F---MCDEMERSLHDALCVVKRVLESKSVVPGGGAVE-AALSIYLENYATSMGSREQLAI 283
+ E+++ + SK ++P G E A+ S LEN A+ + L
Sbjct: 1529 LPLSLWGEIKKKETELPSSQNVSPASKHIIPKGKDEETASSSPELENLASGLAPTLLLLS 1588
Query: 284 AEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSN 337
+ + + + +T + + D+ E + PE+K+ L+L N
Sbjct: 1589 DDKNKPAVEVSSTAQGDFPSEKQDVALA------ELSLEPEKKDKPHQPLELPN 1636
>gi|46048234 nucleolar protein 8 [Homo sapiens]
Length = 1167
Score = 29.3 bits (64), Expect = 6.6
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 68 QGMPKRI---VNAKIACLDFS-----LQKTKMKLG-VQVVITDPEKLDQIRQRESDITKE 118
QG P+++ +N +A D L KTK K G +Q+ + L ++ Q E + K
Sbjct: 46 QGNPQKVFAYINISVAEADLKKCMSVLNKTKWKGGTLQIQLAKESFLHRLAQ-EREAAKA 104
Query: 119 RIQKILATGANVILTTGGID 138
+ ++ AN++ TGG+D
Sbjct: 105 KKEESTTGNANLLEKTGGVD 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,412,881
Number of Sequences: 37866
Number of extensions: 466054
Number of successful extensions: 1069
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 22
length of query: 401
length of database: 18,247,518
effective HSP length: 104
effective length of query: 297
effective length of database: 14,309,454
effective search space: 4249907838
effective search space used: 4249907838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.