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Search of human proteins with 56790897
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56790897 LMBR1 domain containing 2 [Homo sapiens]
(695 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56790897 LMBR1 domain containing 2 [Homo sapiens] 1430 0.0
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|169176417 PREDICTED: hypothetical protein [Homo sapiens] 38 0.036
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 36 0.11
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens] 36 0.11
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 36 0.11
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 36 0.11
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 35 0.23
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens] 35 0.23
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 35 0.23
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso... 35 0.23
gi|94158915 progestin and adipoQ receptor family member III [Hom... 35 0.23
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 35 0.31
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 35 0.31
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 35 0.31
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 35 0.31
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 34 0.40
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 34 0.40
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 34 0.40
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 34 0.40
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 34 0.52
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 34 0.52
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 33 0.68
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 33 0.68
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.68
gi|122937227 U2-associated SR140 protein [Homo sapiens] 33 0.68
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 33 0.68
gi|52426743 cisplatin resistance-associated overexpressed protei... 33 0.89
gi|19923485 cisplatin resistance-associated overexpressed protei... 33 0.89
gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo s... 33 1.2
>gi|56790897 LMBR1 domain containing 2 [Homo sapiens]
Length = 695
Score = 1430 bits (3702), Expect = 0.0
Identities = 695/695 (100%), Positives = 695/695 (100%)
Query: 1 MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTI 60
MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTI
Sbjct: 1 MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTI 60
Query: 61 YNRCKHAAANSSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQF 120
YNRCKHAAANSSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQF
Sbjct: 61 YNRCKHAAANSSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQF 120
Query: 121 LTWILLPFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWN 180
LTWILLPFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWN
Sbjct: 121 LTWILLPFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWN 180
Query: 181 QLQTIGIAAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADA 240
QLQTIGIAAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADA
Sbjct: 181 QLQTIGIAAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADA 240
Query: 241 EENLEDAMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQEKMGRNMDDYEDFDEKHSIY 300
EENLEDAMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQEKMGRNMDDYEDFDEKHSIY
Sbjct: 241 EENLEDAMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQEKMGRNMDDYEDFDEKHSIY 300
Query: 301 PSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQFVHTFQSPEP 360
PSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQFVHTFQSPEP
Sbjct: 301 PSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQFVHTFQSPEP 360
Query: 361 ENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVF 420
ENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVF
Sbjct: 361 ENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVF 420
Query: 421 IQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGML 480
IQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGML
Sbjct: 421 IQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGML 480
Query: 481 FCRLTPPLCLNFLGLTHMDSSISHKNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVIL 540
FCRLTPPLCLNFLGLTHMDSSISHKNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVIL
Sbjct: 481 FCRLTPPLCLNFLGLTHMDSSISHKNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVIL 540
Query: 541 CIATYFSLGTRCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWK 600
CIATYFSLGTRCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWK
Sbjct: 541 CIATYFSLGTRCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWK 600
Query: 601 ERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDF 660
ERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDF
Sbjct: 601 ERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDF 660
Query: 661 NAETFTDDPLESESGRYQPGGRYLSMSRSDIFNDV 695
NAETFTDDPLESESGRYQPGGRYLSMSRSDIFNDV
Sbjct: 661 NAETFTDDPLESESGRYQPGGRYLSMSRSDIFNDV 695
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 40.4 bits (93), Expect = 0.006
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 574 EGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRS 633
EGKE RKE+RKR+ ++E E R++E +E+ +E R R + +E R
Sbjct: 129 EGKERERKEERKREERKERE-RKKEEREKERERKERKKRERKQVGEKEEERKEKERKERK 187
Query: 634 AFKYTRANNRTERDRIE 650
+ R + ER+R E
Sbjct: 188 KRERNRKERKKERERKE 204
Score = 36.2 bits (82), Expect = 0.11
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
KE RKEK +++R++ NR+ KER R + + R + K+ D TN
Sbjct: 174 KEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERKKERQKDRQTN---- 229
Query: 636 KYTRANNRTERDRIE 650
R R +R+R E
Sbjct: 230 --WREKERGKRERKE 242
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 580 RKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTR 639
R+E+ KR+R+ E E +R K+ R+ R R KE+ + R K +
Sbjct: 63 RREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKK-KEKK 121
Query: 640 ANNRTERD 647
RT ++
Sbjct: 122 ERGRTSKE 129
Score = 30.0 bits (66), Expect = 7.5
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 580 RKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTR 639
R+EK ++ +E+ + +++E KER ++E R R KE + R K R
Sbjct: 101 RREKENKEGEEKEKRKKKEKKERGRTSKEGKERER------KEERKREERKERERKKEER 154
Query: 640 ANNRTERDR 648
R ++R
Sbjct: 155 EKERERKER 163
>gi|169176417 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.7 bits (86), Expect = 0.036
Identities = 40/201 (19%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 338 EDVAKNETSATHQFVHTFQSPEPENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFS 397
E KNE +TH ++H + ++ Y + + Y + V I++
Sbjct: 20 EPTCKNEELSTHVYIHIY----------THYICVYTHIYTHICVYTYIYTHICVYTYIYT 69
Query: 398 VIVVWSECTFFSTTPVLSLFAVFIQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRV 457
I V++ + + ++I + Y Y+YI ++ I + IC+Y T +
Sbjct: 70 HICVYTYIYTHICVYIYTHICIYIYM----YIYVYIHTYVYIRI-YTHICIY-TYIHTHI 123
Query: 458 FNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCLNFLGLTHMDSSISHKNTQPTAYTSIMG 517
Y Y+ +H Y+ + ++ R+ +C+ THM + + +T I
Sbjct: 124 CIYAYIHTHMYICVYTHTY---VYMRIYTHICIYAYIYTHMYICV-YIHTYMYICVYIHT 179
Query: 518 SMKVLSFIADGFYIYYPMLVV 538
M + +I YIY + +V
Sbjct: 180 YMYIYVYIHTYMYIYVYIYIV 200
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 36.2 bits (82), Expect = 0.11
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R+ +R+R++++E E R ++R D R+R D SD N +RS
Sbjct: 325 REREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRS 384
Query: 636 KYTRANNRTERDR 648
+ + ER+R
Sbjct: 385 REKSRDRERERER 397
Score = 30.8 bits (68), Expect = 4.4
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 29/125 (23%)
Query: 573 NEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSD----- 627
+ +E R +R+R+R+ E E R +ER + R R D K D
Sbjct: 382 SRSREKSRDREREREREREREREREREREREREREREREREREREKDKKRDREEDEEDAY 441
Query: 628 ------------------------VNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNAE 663
+ + +Y + R E R E+ ++A+ L E
Sbjct: 442 ERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLE 501
Query: 664 TFTDD 668
+ DD
Sbjct: 502 DYDDD 506
>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 36.2 bits (82), Expect = 0.11
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 570 DLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVN 629
D E E R R+R+RQ++ E RR +ER +ED R+R+ + ++ + +
Sbjct: 161 DREREMGETERYRDRERERQKQRETRRDRDRERQ-REKEDRERDRDRQKEREKDRYRERE 219
Query: 630 TNRSAFKYTRANNRTERDR 648
T R K + E+DR
Sbjct: 220 TGRDRDKERDRERQREKDR 238
Score = 30.4 bits (67), Expect = 5.8
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 571 LVNEGKELIRKEKRKRQRQEEGENRRREWKERY------------GHNREDSTRNRNIHT 618
L+ G + R+R+RQ E E +R+ KER+ + D R R
Sbjct: 45 LILRGSRVAPAIIRERERQRERERQRKRAKERHREKDREIEKDRDRQRKRDRERQRWRDR 104
Query: 619 DPKESNFSD----VNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESE 673
D K + D T R + + + + E+DR Q +D + E T+ + E
Sbjct: 105 DRKRERWGDRDRETETERQEERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDRE 163
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 36.2 bits (82), Expect = 0.11
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R+E+R+R+RQ E EN+ + G RE R R T+ + +D +R
Sbjct: 181 REKNRQERRERERQREKENKTEDRHSERGRERE---RERETETETERKRQTDRERDRQRK 237
Query: 636 KYTRANNRTERDR 648
+ ER+R
Sbjct: 238 TEREREKQAERER 250
Score = 34.7 bits (78), Expect = 0.31
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 573 NEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTD-------PKESNF 625
N +E R+ +R+R+RQ E E R + +ER + + R RN T +E
Sbjct: 314 NRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERERER 373
Query: 626 SDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGRYQPGGR 682
+SA + +RDR + + D + + T+ E E R GR
Sbjct: 374 ERERDRQSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGR 430
Score = 33.9 bits (76), Expect = 0.52
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKER-------YGHNRE-DSTRNRNIHTDPKESNFSD 627
KE R+ R+R RQ E E R++ +ER G +R+ D R R D ++ +
Sbjct: 103 KERERQTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRDAEKER--E 160
Query: 628 VNTNRSAFKYTRANNRTERDRIELLQDAEPLD--FNAETFTDDPLESESGR 676
T+R + T N + ER+R + Q+ + E T+D SE GR
Sbjct: 161 RQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTED-RHSERGR 210
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 580 RKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTR 639
R+EKR+ +R+ + + RR K+R H + D R R + + +D +R K
Sbjct: 65 RREKRQTERETDRKRERRREKDR--HRKRDRHRERQRDREKERERQTDRERDRQREK--E 120
Query: 640 ANNRTERDR 648
N + ER+R
Sbjct: 121 RNRQKERER 129
Score = 32.0 bits (71), Expect = 2.0
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
Query: 566 DMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNF 625
D D KE R+ RKRQR+ E + +ER + RNR K
Sbjct: 267 DRDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERERNR------KRERE 320
Query: 626 SDVNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGR 676
+ R + T + ER+R Q + N +T + ++E R
Sbjct: 321 RERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERER 371
Score = 31.6 bits (70), Expect = 2.6
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R KR+R+R+ E E R+ ER + R R D +E N R
Sbjct: 309 RERERNRKRERERERERERERQRETERDREKERERKRKRQTEMD-RERNRQTGREGRRQA 367
Query: 636 KYTRANNRTERDR 648
+ R R ERDR
Sbjct: 368 ERERERER-ERDR 379
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R+ K +R+R+++ E R +E + R+R+ D ++ + T+R
Sbjct: 230 RERDRQRKTEREREKQAERERASERETERDKERERERDRDRDRDRRQKE-RERQTDRKRQ 288
Query: 636 KYTRANNRTERDR 648
+ T + TER R
Sbjct: 289 RRTERDRETERKR 301
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/73 (24%), Positives = 29/73 (39%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R+ +R+R+R + E R +ER + R + K D NR
Sbjct: 301 RERQRERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTG 360
Query: 636 KYTRANNRTERDR 648
+ R ER+R
Sbjct: 361 REGRRQAERERER 373
Score = 29.6 bits (65), Expect = 9.8
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R+ +R RQ++ E E R+E +ER RE + + H++ + T
Sbjct: 165 RERQRQTERNRQKEREREKNRQERRERE-RQREKENKTEDRHSERGRERERERETETE-- 221
Query: 636 KYTRANNRTERDR 648
T +T+R+R
Sbjct: 222 --TERKRQTDRER 232
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 36.2 bits (82), Expect = 0.11
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 574 EGKELIRKEKRKRQRQEEGENRR------REWKERYGHNREDSTRNRNIHTDPKESNFSD 627
+ K+ +R+EKR+ +R+ E E +R R+WKE R+D + + I P+ D
Sbjct: 205 KNKQRMREEKREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKLKD 264
Query: 628 VNTNRSAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESES 674
K + + + ++ + A+ LD E +D+ +S
Sbjct: 265 ----EPKIKLLKKPEKGDEKELDKREKAKKLD--KENLSDERASGQS 305
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 35.0 bits (79), Expect = 0.23
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E +KEK+KR+++E G+ R R+ KER +E + R K+ R
Sbjct: 56 RERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKR---ERKQRGRR 112
Query: 636 KYTRANNRTERDR 648
+ + R ER+R
Sbjct: 113 ERKKKKERKERER 125
Score = 33.9 bits (76), Expect = 0.52
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 580 RKEKRKRQRQEEGENRRREWKERYGHNREDSTR 612
+KEK+KR+R++ G R++ KER RE+ R
Sbjct: 98 KKEKKKRERKQRGRRERKKKKERKERERENKQR 130
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 580 RKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKY 637
R+ K +R+R++E + RR+ KER + D + + +ES F+ V T F+Y
Sbjct: 183 RERKERRERKKERKKERRKKKERKKDRKTDRQTDSQVFRPLRESAFNRV-TVTGVFRY 239
Score = 30.0 bits (66), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E ++ +R+R++++E + R RE K+R R+ + + +E R
Sbjct: 104 RERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKR 163
Query: 636 KYTRANNRTERDRIELLQDAE 656
K + ER+R E ++ E
Sbjct: 164 KKEEREKKRERNRKERKKERE 184
Score = 30.0 bits (66), Expect = 7.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 580 RKEKRKRQRQEEGE-----NRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNR 632
R+ KRK++++EE E NR+ KER R + + R K+ D T+R
Sbjct: 156 RERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKKERRKKKERKKDRKTDR 213
>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 35.0 bits (79), Expect = 0.23
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 580 RKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTR 639
R +R+R+R+ E E R+ ++R + + R R+ D + +D N R+
Sbjct: 62 RDRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRETDRNRERNRKGGRE 121
Query: 640 ANNRTERDR 648
+ +TER+R
Sbjct: 122 RDKQTERER 130
Score = 33.5 bits (75), Expect = 0.68
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 573 NEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNR 632
+ GKE R+ R+R+R+ + E R H + D R R+ TD ++ +R
Sbjct: 12 DRGKETERERDRQRERENQTERENR-------HRQRDRHRERDRQTDREKERERQKERDR 64
Query: 633 SAFKYTRANNRTERDR 648
+ TER R
Sbjct: 65 QRQRERETERETERQR 80
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 573 NEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNR 632
+ +E RK R+R +Q E E R ++R R R TD + +++ +
Sbjct: 109 DRNRERNRKGGRERDKQTERERDRERERQRQRERERQRQRERKRETDRERQRWAEREERK 168
Query: 633 SAFKYTRANNRTERDRIE 650
K R R E+ + E
Sbjct: 169 KERKKERKKERKEKKKEE 186
Score = 31.2 bits (69), Expect = 3.4
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
+E R+ +R+RQR+ + + R K+R + ++ RNR + K D T R
Sbjct: 74 RETERQRERQRQRERKRQTDRERDKDRDRERKRETDRNR--ERNRKGGRERDKQTERERD 131
Query: 636 KYTRANNRTERDR 648
+ + ER+R
Sbjct: 132 RERERQRQRERER 144
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.23
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERY--GHNREDSTRNRNIHTDPKESNFSDVNTNRS 633
K+ +KEK+K+Q +E+ + + + +E HN+E ++ R+ D K ++ R
Sbjct: 232 KKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSK-RDEKLDKKSQAMEELKAERE 290
Query: 634 AFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGR 676
+ NRT ELL +PL +E ++DD E E +
Sbjct: 291 -----KRKNRT----AELLAKKQPLK-TSEVYSDDEEEEEDDK 323
>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
isoform 1 [Homo sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.23
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 574 EGKELIRKEKRKRQRQEEGENRR------REWKERYGHNREDSTRNRNIHTDPKESNFSD 627
+ K+ +R+EKR+ +R+ E E +R R+WKE R+D + + I P+ D
Sbjct: 205 KNKQRMREEKREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKLKD 264
Query: 628 ---VNTNRSAFKYTRANNRTER----DRIELLQDAEPLDFNAETFTDDPLESES 674
+ +R + N ++ D EL + + + E +D+ +S
Sbjct: 265 EPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQS 318
>gi|94158915 progestin and adipoQ receptor family member III [Homo
sapiens]
Length = 311
Score = 35.0 bits (79), Expect = 0.23
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 512 YTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGTRCLN----LLGFQQF--MGDD 565
Y I GS+K +I DG+ Y P LCI + F L +N LLGF F +G
Sbjct: 33 YEQIPGSLKDNPYITDGYRAYLPSR---LCIKSLFILSNETVNIWSHLLGFFLFFTLGIY 89
Query: 566 DMTSDL 571
DMTS L
Sbjct: 90 DMTSVL 95
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 34.7 bits (78), Expect = 0.31
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 580 RKEKRKRQRQEEGENRRREW-------KERYGHNREDSTRNRNIHTDPKESNFSDVNTNR 632
R+E+ +R++Q E RR W + R G ++ R R + E ++ +
Sbjct: 391 RREREEREKQRALEQGRRAWAAQVEERRGRRGREEREAARRRQRQYERSEERRRELAERQ 450
Query: 633 SAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGRYQPGGR 682
+ RA DR+ LQ + L E + +E R + R
Sbjct: 451 GLLRRERAERAAREDRLRKLQQEQNLKQREEGLQEGRERAEQIRRERAQR 500
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 34.7 bits (78), Expect = 0.31
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 580 RKEKRKRQRQEEGENRRREW-------KERYGHNREDSTRNRNIHTDPKESNFSDVNTNR 632
R+E+ +R++Q E RR W + R G ++ R R + E ++ +
Sbjct: 393 RREREEREKQRALEQGRRAWAAQVEERRGRRGREEREAARRRQRQYERSEERRRELAERQ 452
Query: 633 SAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGRYQPGGR 682
+ RA DR+ LQ + L E + +E R + R
Sbjct: 453 GLLRRERAERAAREDRLRKLQQEQNLKQREEGLQEGRERAEQIRRERAQR 502
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 34.7 bits (78), Expect = 0.31
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 580 RKEKRKRQRQEEGENRRREW-------KERYGHNREDSTRNRNIHTDPKESNFSDVNTNR 632
R+E+ +R++Q E RR W + R G ++ R R + E ++ +
Sbjct: 393 RREREEREKQRALEQGRRAWAAQVEERRGRRGREEREAARRRQRQYERSEERRRELAERQ 452
Query: 633 SAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGRYQPGGR 682
+ RA DR+ LQ + L E + +E R + R
Sbjct: 453 GLLRRERAERAAREDRLRKLQQEQNLKQREEGLQEGRERAEQIRRERAQR 502
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 34.7 bits (78), Expect = 0.31
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 579 IRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNR 614
I KE+++++R+EE E RRRE +ER +E+ R R
Sbjct: 181 IEKEEQEKKRKEEEERRRREEEERERLQKEEEKRRR 216
Score = 30.4 bits (67), Expect = 5.8
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 574 EGKELIRKEKRKRQR-QEEGENRRREWKERYGHNREDSTR 612
E +E R+E+ +R+R Q+E E RRRE +ER E+ R
Sbjct: 192 EEEERRRREEEERERLQKEEEKRRREEEERLRREEEERRR 231
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 574 EGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNR 614
E +E RKE+ +R+R+EE E R R KE RE+ R R
Sbjct: 184 EEQEKKRKEEEERRRREE-EERERLQKEEEKRRREEEERLR 223
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 34.3 bits (77), Expect = 0.40
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 568 TSDLVNEGKELIRKEKRKRQRQEEGE----NRRREWKERYGHNREDS-TRNRNIHTDPKE 622
T + NE KE KEK+ +++QEE + +R E+K++Y +++ R R + T
Sbjct: 632 TREQENEEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSST 691
Query: 623 SNFSDVNTNRSAFKYTRANNR 643
+ S ++T S+ + NR
Sbjct: 692 TPSSSLSTMSSSLYASSQLNR 712
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 34.3 bits (77), Expect = 0.40
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 568 TSDLVNEGKELIRKEKRKRQRQEEGE----NRRREWKERYGHNREDS-TRNRNIHTDPKE 622
T + NE KE KEK+ +++QEE + +R E+K++Y +++ R R + T
Sbjct: 719 TREQENEEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSST 778
Query: 623 SNFSDVNTNRSAFKYTRANNR 643
+ S ++T S+ + NR
Sbjct: 779 TPSSSLSTMSSSLYASSQLNR 799
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 34.3 bits (77), Expect = 0.40
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 568 TSDLVNEGKELIRKEKRKRQRQEEGE----NRRREWKERYGHNREDS-TRNRNIHTDPKE 622
T + NE KE KEK+ +++QEE + +R E+K++Y +++ R R + T
Sbjct: 719 TREQENEEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSST 778
Query: 623 SNFSDVNTNRSAFKYTRANNR 643
+ S ++T S+ + NR
Sbjct: 779 TPSSSLSTMSSSLYASSQLNR 799
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 34.3 bits (77), Expect = 0.40
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 577 ELIRKEKRKRQRQEEGENRRREWKERYGHNRE---DSTRNRNIHTDPKESNFSDVNTNRS 633
++++KE + +R +E E RR+E +E RE + RNR + + + + + + R
Sbjct: 1233 QIVQKEAERAERAKEREKRRKEQEEEEQKEREKEAERERNRQLEREKRREHSRERDRER- 1291
Query: 634 AFKYTRANNRTERDR 648
+ R +R +RDR
Sbjct: 1292 --ERERERDRGDRDR 1304
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 33.9 bits (76), Expect = 0.52
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 588 RQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTRANNRT 644
++EE E +R+E K+ Y N ST N T + N +R +Y R N+R+
Sbjct: 19 KKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRS 75
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 33.9 bits (76), Expect = 0.52
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 588 RQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTRANNRT 644
++EE E +R+E K+ Y N ST N T + N +R +Y R N+R+
Sbjct: 19 KKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRS 75
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 33.5 bits (75), Expect = 0.68
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 563 GDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKE 622
G++D S + +++ RKEK ++ E+ R+ +WK RE R R+ K
Sbjct: 77 GEED-DSLAIKPPQQMSRKEKVHHRKDEK---RKEKWKHARVKEREHERRKRHREEQDKA 132
Query: 623 SNFSDVNTNRSAFKYTRANNRTERDRIELLQ 653
+ R + R ++R ERDR+E L+
Sbjct: 133 RREWERQKRR---EMAREHSRRERDRLEQLE 160
Score = 30.4 bits (67), Expect = 5.8
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNRE-----DSTRNRNIHTDPKESNFSDVNT 630
++L RK +R+R+ +E+ + +RE KER E ++ R + H ++SD
Sbjct: 157 EQLERKRERERKMREQ-QKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSD--- 212
Query: 631 NRSAFKYTRANNRTERDRIELLQDAEPL 658
A ++R+ R R+R EL +P+
Sbjct: 213 KVKASHWSRSPPRPPRERFELGDGRKPV 240
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 33.5 bits (75), Expect = 0.68
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 574 EGKELIRKE-----KRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDV 628
E +LIR + K+K +RQE G R +ER D + + DP SD
Sbjct: 729 EVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDK 788
Query: 629 NTNRSAFKYTR-ANNRTERDRIEL 651
+ Y+R AN+R + I+L
Sbjct: 789 DVPSERNNYSRVANDRDQEMHIDL 812
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.5 bits (75), Expect = 0.68
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 565 DDMTSDLVNEGKEL-IRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKE 622
+++ + + + KE+ +R+E+ +R+R+EE R+RE +E+ RE+S +R + DP+E
Sbjct: 550 EELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREES-YSRMGYMDPRE 607
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 33.5 bits (75), Expect = 0.68
Identities = 29/114 (25%), Positives = 46/114 (40%)
Query: 576 KELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAF 635
KEL R+ +R ++ +E+ E+R ++ KE+ R R T P S S +S
Sbjct: 889 KELERERERDKKDKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPS 948
Query: 636 KYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGRYQPGGRYLSMSRS 689
+ + R+ER E + + + S SG P S SRS
Sbjct: 949 PKSERSERSERSHKESSRSRSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRS 1002
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.68
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 584 RKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNTNRSAFKYTRANNR 643
R+R+R+ E ENR+RE + +RE R R + + + + ++ RA R
Sbjct: 402 RERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEEWERERA-KR 460
Query: 644 TERDRIELLQDAE 656
E+DR +D E
Sbjct: 461 DEKDRQHRDRDRE 473
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 33.1 bits (74), Expect = 0.89
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 564 DDDMTSDLVNEGKELIRKEK-RKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKE 622
+ D L E +E +EK R+R+R+E RRRE +ER D R + + +
Sbjct: 240 EPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRH 299
Query: 623 SN-FSDVNTNRSAFKYTRANNRTER 646
S+ SD +RS + R+ +R R
Sbjct: 300 SSRTSDRRCSRSR-DHKRSRSRERR 323
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 576 KELIRKEKRKRQRQEEGE---------NRRREWKERYGHNREDSTRNRNIHTDPKESNFS 626
+E R+E+ +++R+EE E RR+ + R H+ S R + D K S
Sbjct: 261 REREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSR 320
Query: 627 DVNTNRSA-FKYTRANNRTER 646
+ +RS + +R+++R+ER
Sbjct: 321 ERRRSRSRDRRRSRSHDRSER 341
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 33.1 bits (74), Expect = 0.89
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 564 DDDMTSDLVNEGKELIRKEK-RKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKE 622
+ D L E +E +EK R+R+R+E RRRE +ER D R + + +
Sbjct: 240 EPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRH 299
Query: 623 SN-FSDVNTNRSAFKYTRANNRTER 646
S+ SD +RS + R+ +R R
Sbjct: 300 SSRTSDRRCSRSR-DHKRSRSRERR 323
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 576 KELIRKEKRKRQRQEEGE---------NRRREWKERYGHNREDSTRNRNIHTDPKESNFS 626
+E R+E+ +++R+EE E RR+ + R H+ S R + D K S
Sbjct: 261 REREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSR 320
Query: 627 DVNTNRSA-FKYTRANNRTER 646
+ +RS + +R+++R+ER
Sbjct: 321 ERRRSRSRDRRRSRSHDRSER 341
>gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo
sapiens]
Length = 253
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 574 EGKELIRKEKRKRQRQEEGE-----NRRREWKERYGHNRE---DSTRNRNIHTDPKE 622
E KE+ +RKRQR+EE E R REW++ + +R+ DS RN +T K+
Sbjct: 181 EAKEM---HERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKK 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,232,421
Number of Sequences: 37866
Number of extensions: 1185675
Number of successful extensions: 7317
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 6529
Number of HSP's gapped (non-prelim): 599
length of query: 695
length of database: 18,247,518
effective HSP length: 109
effective length of query: 586
effective length of database: 14,120,124
effective search space: 8274392664
effective search space used: 8274392664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.