Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 55770856
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770856 golgi SNAP receptor complex member 1 isoform 3
[Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770858 golgi SNAP receptor complex member 1 isoform 2 [Homo... 363 e-101
gi|55770856 golgi SNAP receptor complex member 1 isoform 3 [Homo... 363 e-101
gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo ... 363 e-101
gi|55770834 centromere protein F [Homo sapiens] 41 5e-04
gi|71061468 centromere protein E [Homo sapiens] 33 0.14
gi|50083279 centrosome protein 4 [Homo sapiens] 33 0.14
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 32 0.24
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo... 31 0.69
gi|197313728 pleckstrin homology-like domain, family B, member 2... 30 0.91
gi|21955172 pleckstrin homology-like domain, family B, member 2 ... 30 0.91
gi|7662160 hypothetical protein LOC9813 [Homo sapiens] 30 0.91
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 30 1.2
gi|112420968 coiled-coil domain containing 158 [Homo sapiens] 30 1.5
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 30 1.5
gi|155722985 SMC5 protein [Homo sapiens] 30 1.5
gi|62899065 centrosomal protein 72 kDa [Homo sapiens] 29 2.0
gi|130980075 centromere protein J [Homo sapiens] 29 2.6
gi|38788260 bromodomain PHD finger transcription factor isoform ... 29 2.6
gi|38788274 bromodomain PHD finger transcription factor isoform ... 29 2.6
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 28 3.4
gi|221625538 MORC family CW-type zinc finger 1 [Homo sapiens] 28 3.4
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 28 3.4
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 28 3.4
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 28 3.4
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 28 3.4
gi|153791218 hypothetical protein LOC115749 [Homo sapiens] 28 3.4
gi|197313732 pleckstrin homology-like domain, family B, member 2... 28 3.4
gi|197313730 pleckstrin homology-like domain, family B, member 2... 28 3.4
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap... 28 4.5
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 28 4.5
>gi|55770858 golgi SNAP receptor complex member 1 isoform 2 [Homo
sapiens]
Length = 248
Score = 363 bits (931), Expect = e-101
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 60
MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT
Sbjct: 64 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 123
Query: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM
Sbjct: 124 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 183
Query: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 180
ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL
Sbjct: 184 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 243
Query: 181 LYAFH 185
LYAFH
Sbjct: 244 LYAFH 248
>gi|55770856 golgi SNAP receptor complex member 1 isoform 3 [Homo
sapiens]
Length = 185
Score = 363 bits (931), Expect = e-101
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 60
MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT
Sbjct: 1 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 60
Query: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM
Sbjct: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
Query: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 180
ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL
Sbjct: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 180
Query: 181 LYAFH 185
LYAFH
Sbjct: 181 LYAFH 185
>gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo
sapiens]
Length = 250
Score = 363 bits (931), Expect = e-101
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 60
MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT
Sbjct: 66 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 125
Query: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM
Sbjct: 126 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 185
Query: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 180
ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL
Sbjct: 186 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 245
Query: 181 LYAFH 185
LYAFH
Sbjct: 246 LYAFH 250
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 41.2 bits (95), Expect = 5e-04
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 2 FETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNA-ALMHTLQRHRDILQDYTHEFHKT 60
F+T+ E Q+ ARLT ++ + N V L Q+ + L+++ + +
Sbjct: 407 FQTLDQECIQMKARLT---QELQQAKNMHNVLQAELDKLTSVKQQLENNLEEFKQKLCRA 463
Query: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----RNSDRLIEETI 116
+ F A + +EN +R+ +E K + + +E +E HL +N + + ++
Sbjct: 464 EQAFQASQIKEN---ELRRSMEEMKKENNLLKSHSEQKAREVCHLEAELKNIKQCLNQSQ 520
Query: 117 SIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRD 164
+ A K TSQ ML+ + K+N N + +L K+RD
Sbjct: 521 NFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLAVADLEKQRD 568
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 67 IRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENM 126
+ E+E + +++K +E+ + N+ E++ KE ++E ++ KE+
Sbjct: 1500 LSEKETEISTIQKQLEAINDK--LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHR 1557
Query: 127 TSQRGMLKSIHSKMNTLANRFPAVNSLIQ 155
++ L+SI SKM L NR IQ
Sbjct: 1558 KAKDSALQSIESKMLELTNRLQESQEEIQ 1586
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 40 MHTLQRHRDILQDYTHEFHKTKANFMAIRERE------NLMGSVRKDIESYKSGSGVNNR 93
+H LQ +++ ++ K + +RERE L G D+ S +S + N +
Sbjct: 213 VHQLQEKLAMMESGVRDYSKQ----IELREREIERLSVALDGGRSPDVLSLESRNKTNEK 268
Query: 94 RTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSL 153
+ D L+ +++ +E+ I M TKE +TS+ + ++ +K L ++ L
Sbjct: 269 LIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSE---VVNLSNKNEKLCQELTEIDQL 325
Query: 154 IQRINLRK 161
Q++ K
Sbjct: 326 AQQLERHK 333
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 32.3 bits (72), Expect = 0.24
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 10 EQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRE 69
E L +L N K++ S+G R+ +Q+ + + A+ +
Sbjct: 1130 EAALIKLQDENKKLSTRFESSGQDMF-----------RETIQNLSRIIREKDIEIDALSQ 1178
Query: 70 RENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQ 129
+ + +V + + GVN+ + E L+E D L+ + +EE M T +NM +
Sbjct: 1179 KCQTLLAVLQTSSTGNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHE 1238
Query: 130 RGMLK 134
L+
Sbjct: 1239 SAQLQ 1243
>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 0.69
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 39 LMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELF 98
L + +Q + L+++ H H A R+RE L+ ++ + +
Sbjct: 73 LKYDVQHLQTALRNFQHRRH---AREQQERQREELLS------RTFTTNDSDTTIPMDES 123
Query: 99 LKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRIN 158
L+ + L+ +++ I + + +QR LK K+ +AN N++++ I
Sbjct: 124 LQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIE 183
Query: 159 LRKRRDS-LILGGVIGICTILLLLYAF 184
R +D ++GG++ C ++ L+ +
Sbjct: 184 KRAFQDKYFMIGGMLLTCVVMFLVVQY 210
>gi|197313728 pleckstrin homology-like domain, family B, member 2
isoform b [Homo sapiens]
Length = 1237
Score = 30.4 bits (67), Expect = 0.91
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 20/153 (13%)
Query: 16 LTGVNDKMAEYT-NSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLM 74
L +N K+AE N G + +A L+ +H + L EF + + E+ENL
Sbjct: 674 LDHLNRKIAELEKNIVGEKTKDADLLDVESKHFEDL-----EFQQLEHESRLDEEKENLT 728
Query: 75 GSVRKDIESYKSGSGVNNRRTELFLKEHDHL-----RNSDRLIEETISIAM---ATKENM 126
+ +++ Y+ + K+ +H+ R D ++E ++ M KEN+
Sbjct: 729 QQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQREQDHFVKEKNNLIMMLQREKENL 788
Query: 127 TSQRGMLKSIHS------KMNTLANRFPAVNSL 153
+ S+ NTL + +VN +
Sbjct: 789 CNLEKKYSSLSGGKGFPVNPNTLKEGYISVNEI 821
>gi|21955172 pleckstrin homology-like domain, family B, member 2
isoform c [Homo sapiens]
Length = 1210
Score = 30.4 bits (67), Expect = 0.91
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 20/153 (13%)
Query: 16 LTGVNDKMAEYT-NSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLM 74
L +N K+AE N G + +A L+ +H + L EF + + E+ENL
Sbjct: 647 LDHLNRKIAELEKNIVGEKTKDADLLDVESKHFEDL-----EFQQLEHESRLDEEKENLT 701
Query: 75 GSVRKDIESYKSGSGVNNRRTELFLKEHDHL-----RNSDRLIEETISIAM---ATKENM 126
+ +++ Y+ + K+ +H+ R D ++E ++ M KEN+
Sbjct: 702 QQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQREQDHFVKEKNNLIMMLQREKENL 761
Query: 127 TSQRGMLKSIHS------KMNTLANRFPAVNSL 153
+ S+ NTL + +VN +
Sbjct: 762 CNLEKKYSSLSGGKGFPVNPNTLKEGYISVNEI 794
>gi|7662160 hypothetical protein LOC9813 [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 0.91
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 61 KANFMAIRERENLMGSVRKDIESYKSGS-GVN---------NRRTELFLKEHDHLRNSDR 110
K++F I + + S +K +E +SG G+N N++ L +HL+ + +
Sbjct: 117 KSSFQEIPKLNEELLSKQKQLEKIESGEMGLNKVWINITEMNKQISLLTSAVNHLKANVK 176
Query: 111 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 167
+ IS+ T+ G+ KS+ S NTL + AV +L + ++ K+ L+
Sbjct: 177 SAADLISLP-------TTVEGLQKSVASIGNTLNSVHLAVEALQKTVDEHKKTMELL 226
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 28 NSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSG 87
NS G S + HT+ +HR I+ Y H+ KA F R +V+ I +G
Sbjct: 949 NSKGSTSEKDGMHHTVTKHRGIITLYRHQ----KAAFAITSRRGPTPKAVKAQIADLPAG 1004
Query: 88 SGVN 91
S N
Sbjct: 1005 SSGN 1008
>gi|112420968 coiled-coil domain containing 158 [Homo sapiens]
Length = 1113
Score = 29.6 bits (65), Expect = 1.5
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 8 EIEQLLARLTGVNDKMAEYTNSAGVPSLNAA---------LMHTLQRHRDILQDYTHEFH 58
+I +L AR++ + + + N AG L A L++ ++ R L + + E+
Sbjct: 619 KIRELEARVSDLELEKVKLVN-AGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYE 677
Query: 59 KTKANFM-AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIE---- 113
K NF E E ++ ++S +S E + RN+ + +E
Sbjct: 678 VLKRNFRNKSEEMEMTTNKLKMQLKSAQS--------------ELEQTRNTLKSMEGSDG 723
Query: 114 ETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVN 151
+ +AM ++ +T++RG + ++ SK+ L N
Sbjct: 724 HAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
Score = 28.9 bits (63), Expect = 2.6
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 8 EIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAI 67
++E+ +A + G N+ + + V SL A L T + R ++++ T + +++ I
Sbjct: 445 QMERQMAAIQGKNESLEK------VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTI 498
Query: 68 -------RERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
+E+E + + +I +S + + + E DHLRN E + + M
Sbjct: 499 SDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC-EALKLQM 557
Query: 121 ATKENM 126
K+ +
Sbjct: 558 TEKDKV 563
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 66 AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 125
A RE++ L+ V++ + + +++ E KEH HL S++ + E + A K
Sbjct: 952 ARREKQQLL-DVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQARKLK 1010
Query: 126 MTSQRGMLKS 135
+ SQ +L++
Sbjct: 1011 LESQVDLLQA 1020
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 29.6 bits (65), Expect = 1.5
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 68 RERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDH-LRNSDRLIEETISIAMATKENM 126
R E + + + +++ SG + R T L+ D+ LR + + E + ++ +
Sbjct: 653 RHLEEQLKEIHRKLQAVDSGL-IALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKI 711
Query: 127 TSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTIL 178
+S+ G LK + L ++ I+ IN++K + L +I ICT L
Sbjct: 712 SSKLGSLKLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSL 763
>gi|62899065 centrosomal protein 72 kDa [Homo sapiens]
Length = 647
Score = 29.3 bits (64), Expect = 2.0
Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 34 SLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRER-----------ENLMGSVRKDIE 82
SL + L Q+H + + T E H T +R+ ++L+ S++K+++
Sbjct: 483 SLQSRLAEQQQQHAREMSEVTAELHHTHKELDDLRQHLDKSLEENSRLKSLLLSMKKEVK 542
Query: 83 SYKSGSGVNNRRTEL----------------FLKEHDHLRNSDRLIEETISIAMATKENM 126
S + + +N + L L+ +D ++ ++++E+ S ++T E++
Sbjct: 543 SADTAATLNLQIAGLQTSVKRLCGEIVELKQHLEHYDKIQELTQMLQESHSSLVSTNEHL 602
Query: 127 TSQRGMLKSIH 137
+ +++ H
Sbjct: 603 LQELSQVRAQH 613
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 28.9 bits (63), Expect = 2.6
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 50 LQDYTHEFHKTKANFMAIR-ERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNS 108
L+ +F A+ +R ERE+ + +RK+I ++ R E F KE
Sbjct: 913 LETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQK 972
Query: 109 DRLIEETISIAMAT-------------KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQ 155
+R + E + A T K+ + R LK +K ++ +R + ++
Sbjct: 973 ERKVFEKYTTAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLV 1032
Query: 156 RINLRKRRDSLIL 168
R N R + ++
Sbjct: 1033 RENTDLREEIKVM 1045
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 43 LQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK---DIESYKSGSGVNNRRTELFL 99
+ RH DI +D T++ + +F+A E ++ S+R DI++ KS + E
Sbjct: 527 IHRHMDITEDLTNKARGSNKSFLA-AANEEILESIRAKKGDIDNVKSPEETEKDKNETEN 585
Query: 100 KEHDHLRNSDRLIEETI 116
D +N + ++++
Sbjct: 586 DSKDAEKNREEFEDQSL 602
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 43 LQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK---DIESYKSGSGVNNRRTELFL 99
+ RH DI +D T++ + +F+A E ++ S+R DI++ KS + E
Sbjct: 527 IHRHMDITEDLTNKARGSNKSFLA-AANEEILESIRAKKGDIDNVKSPEETEKDKNETEN 585
Query: 100 KEHDHLRNSDRLIEETI 116
D +N + ++++
Sbjct: 586 DSKDAEKNREEFEDQSL 602
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 28.5 bits (62), Expect = 3.4
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 40 MHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFL 99
+ +Q ++ LQ E AN E +NL+ V +++ S S ++N + + F+
Sbjct: 847 LEEIQSEKEALQSDLLEMKN--ANEKTRLENQNLLIQV-EEVSQTCSKSEIHNEKEKCFI 903
Query: 100 KEHDHLR 106
KEH++L+
Sbjct: 904 KEHENLK 910
>gi|221625538 MORC family CW-type zinc finger 1 [Homo sapiens]
Length = 984
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSD 109
K F+ ++E +L+ + + + Y +G+NNR LF E + + D
Sbjct: 414 KQEFLNVQEYNHLLKVMGQYLVQYCKDTGINNRNLTLFCNEFGYQNDID 462
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 28.5 bits (62), Expect = 3.4
Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 44/179 (24%)
Query: 1 MFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 56
+ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+ +
Sbjct: 2100 LMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQ 2155
Query: 57 FHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR 106
+ K N A EN++ +++ ++ + + + +KE +
Sbjct: 2156 LEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRK 2215
Query: 107 ------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 159
NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 2216 AKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 2254
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 28.5 bits (62), Expect = 3.4
Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 44/179 (24%)
Query: 1 MFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 56
+ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+ +
Sbjct: 435 LMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQ 490
Query: 57 FHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR 106
+ K N A EN++ +++ ++ + + + +KE +
Sbjct: 491 LEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRK 550
Query: 107 ------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 159
NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 551 AKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 589
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 28.5 bits (62), Expect = 3.4
Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 44/179 (24%)
Query: 1 MFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 56
+ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+ +
Sbjct: 2044 LMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQ 2099
Query: 57 FHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR 106
+ K N A EN++ +++ ++ + + + +KE +
Sbjct: 2100 LEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRK 2159
Query: 107 ------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 159
NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 2160 AKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 2198
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 28.5 bits (62), Expect = 3.4
Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 44/179 (24%)
Query: 1 MFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 56
+ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+ +
Sbjct: 491 LMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAKQ 546
Query: 57 FHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLR 106
+ K N A EN++ +++ ++ + + + +KE +
Sbjct: 547 LEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRK 606
Query: 107 ------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 159
NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 607 AKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 645
>gi|153791218 hypothetical protein LOC115749 [Homo sapiens]
Length = 462
Score = 28.5 bits (62), Expect = 3.4
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 50 LQDYTHEFHKTKANFMAIRERENLMGSVR-KDIESYKSG--------SGVNNRRTELFLK 100
++ + FH TKAN ++E +N + R K+ S K + ++ELFLK
Sbjct: 122 VRKFLFPFHHTKANNKKVKEEKNGLAFWRSKESRSLKESPLRSEEKIKHFSQLKSELFLK 181
Query: 101 EHDHLRNSDRLIEETISIAMATKENMTSQRGMLKS---IHSKMNTLANRFPAVNSLIQRI 157
++ LR R++ + + +A ++N +R K+ + +N L P
Sbjct: 182 DNS-LR---RILSLLMELKVAAQKNFILKRLFWKTSDLFYFIVNKLHEYLPESRDKNALQ 237
Query: 158 NLRKRRDSLILGGVIGICTILLLLY 182
N +R D L+ I I L+L++
Sbjct: 238 NQSQRVDELV--ACIEIIQTLVLMF 260
>gi|197313732 pleckstrin homology-like domain, family B, member 2
isoform a [Homo sapiens]
Length = 1253
Score = 28.5 bits (62), Expect = 3.4
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 34 SLNAALMHTLQRHRDILQ-DYTH----EFHKTKANFMAIRERENLMGSVRKDIESYKSGS 88
S+ L L+R D+L + H EF + + E+ENL + +++ Y+
Sbjct: 699 SMREQLQQQLKRDADLLDVESKHFEDLEFQQLEHESRLDEEKENLTQQLLREVAEYQRNI 758
Query: 89 GVNNRRTELFLKEHDHL-----RNSDRLIEETISIAM---ATKENMTSQRGMLKSIHS-- 138
+ K+ +H+ R D ++E ++ M KEN+ + S+
Sbjct: 759 VSRKEKISALKKQANHIVQQAQREQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLSGGK 818
Query: 139 ----KMNTLANRFPAVNSL 153
NTL + +VN +
Sbjct: 819 GFPVNPNTLKEGYISVNEI 837
>gi|197313730 pleckstrin homology-like domain, family B, member 2
isoform a [Homo sapiens]
Length = 1253
Score = 28.5 bits (62), Expect = 3.4
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 34 SLNAALMHTLQRHRDILQ-DYTH----EFHKTKANFMAIRERENLMGSVRKDIESYKSGS 88
S+ L L+R D+L + H EF + + E+ENL + +++ Y+
Sbjct: 699 SMREQLQQQLKRDADLLDVESKHFEDLEFQQLEHESRLDEEKENLTQQLLREVAEYQRNI 758
Query: 89 GVNNRRTELFLKEHDHL-----RNSDRLIEETISIAM---ATKENMTSQRGMLKSIHS-- 138
+ K+ +H+ R D ++E ++ M KEN+ + S+
Sbjct: 759 VSRKEKISALKKQANHIVQQAQREQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLSGGK 818
Query: 139 ----KMNTLANRFPAVNSL 153
NTL + +VN +
Sbjct: 819 GFPVNPNTLKEGYISVNEI 837
>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
sapiens]
Length = 372
Score = 28.1 bits (61), Expect = 4.5
Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 3 ETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKA 62
ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 137 ETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQSLDV 189
Query: 63 NFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
F + +E + SV ++IE K + + N E +K + +++L++E ++
Sbjct: 190 IFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTL-- 247
Query: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 167
++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 248 --QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.1 bits (61), Expect = 4.5
Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 3 ETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKA 62
ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 137 ETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQSLDV 189
Query: 63 NFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
F + +E + SV ++IE K + + N E +K + +++L++E ++
Sbjct: 190 IFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTL-- 247
Query: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 167
++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 248 --QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,519,934
Number of Sequences: 37866
Number of extensions: 197896
Number of successful extensions: 710
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 54
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.