Guide to the Human Genome
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Name: DENND1A Sequence: fasta or formatted (559aa) NCBI GI: 55749789
Description:

DENN/MADD domain containing 1A isoform 2

Referenced in:

Additional Interaction Domain Families
Rab

Other entries for this name:
alt prot [1009aa] DENN/MADD domain containing 1A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         34           2
 C cysteine            1.8         10           2
 D aspartate           4.7         26           2
 E glutamate           6.1         34           3
 F phenylalanine       5.2         29           2
 G glycine             4.5         25           2
 H histidine           2.9         16           1
 I isoleucine          4.8         27           2
 K lysine              6.1         34           2
 L leucine             9.8         55           2
 M methionine          2.1         12           1
 N asparagine          4.3         24           2
 P proline             6.8         38           2
 Q glutamine           4.3         24           1
 R arginine            5.0         28           2
 S serine              7.0         39           3
 T threonine           7.0         39           3
 V valine              7.0         39           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.8         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DENN/MADD domain containing 1A isoform 2 
DENND1A               0.940   DENN/MADD domain containing 1A isoform 1 
DENND1B               0.540   DENN/MADD domain containing 1B isoform 1 
DENND1B               0.472   DENN/MADD domain containing 1B isoform 2 
DENND1C               0.402   DENN/MADD domain containing 1C 
DENND2A               0.123   DENN/MADD domain containing 2A 
ST5                   0.114   suppression of tumorigenicity 5 isoform 1 
ST5                   0.114   suppression of tumorigenicity 5 isoform 1 
ST5                   0.114   suppression of tumorigenicity 5 isoform 2 
DENND2C               0.112   DENN/MADD domain containing 2C 
DENND2D               0.110   DENN/MADD domain containing 2D 
DENND5A               0.057   RAB6 interacting protein 1 
DENND5B               0.049   DENN/MADD domain containing 5B 
DENND4C               0.049   DENN/MADD domain containing 4C 
DENND4A               0.048   DENN/MADD domain containing 4A isoform 1 
DENND4A               0.048   DENN/MADD domain containing 4A isoform 2 
DENND3                0.047   DENN/MADD domain containing 3 
SBF2                  0.044   SET binding factor 2 
SBF1                  0.040   SET binding factor 1 
DENND4B               0.040   DENN/MADD domain containing 4B 
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing protei...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
MADD                  0.022   MAP-kinase activating death domain-containing prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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