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Search of human proteins with 54607029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54607029 28kD interferon responsive protein [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54607029 28kD interferon responsive protein [Homo sapiens] 520 e-148
gi|13899263 transmembrane protein 7 [Homo sapiens] 171 5e-43
gi|51972198 receptor transporting protein 2 [Homo sapiens] 95 5e-20
gi|114687645 receptor transporting protein 1 [Homo sapiens] 92 5e-19
gi|134288863 hypothetical protein LOC285093 [Homo sapiens] 85 7e-17
gi|211971095 zygote arrest 1-like [Homo sapiens] 35 0.078
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 33 0.23
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 33 0.23
gi|28269687 zygote arrest 1 [Homo sapiens] 33 0.23
gi|21264602 laminin alpha 5 [Homo sapiens] 32 0.66
gi|115527080 metastasis associated protein [Homo sapiens] 31 0.86
gi|169160873 PREDICTED: similar to hCG2040319 [Homo sapiens] 31 1.1
gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens] 31 1.1
gi|239741226 PREDICTED: similar to hCG2040319 [Homo sapiens] 31 1.1
gi|32261332 seizure related 6 homolog (mouse)-like precursor [Ho... 30 1.5
gi|4758528 hepatocyte growth factor-regulated tyrosine kinase su... 30 2.5
gi|223633947 zinc finger, CCHC domain containing 24 [Homo sapiens] 29 3.3
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 29 4.3
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 28 5.6
gi|20070166 potassium voltage-gated channel, subfamily F, member... 28 7.3
gi|217416354 sphingosine kinase type 1-interacting protein isofo... 28 9.5
gi|217416352 sphingosine kinase type 1-interacting protein isofo... 28 9.5
>gi|54607029 28kD interferon responsive protein [Homo sapiens]
Length = 246
Score = 520 bits (1339), Expect = e-148
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR 60
MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
Sbjct: 1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR 60
Query: 61 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ 120
SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
Sbjct: 61 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ 120
Query: 121 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH 180
HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH
Sbjct: 121 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH 180
Query: 181 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 240
LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
Sbjct: 181 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 240
Query: 241 KCFTSE 246
KCFTSE
Sbjct: 241 KCFTSE 246
>gi|13899263 transmembrane protein 7 [Homo sapiens]
Length = 232
Score = 171 bits (433), Expect = 5e-43
Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 12/241 (4%)
Query: 1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR 60
M D W+Q FQEL++E KP WTL+ D L + L GW QYQQ F F+CSSC R
Sbjct: 1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR 60
Query: 61 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ 120
+WASAQV +L H W S+GQV+MR+F QRC+KC +E PEF+ ++ RIL NLV
Sbjct: 61 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF 120
Query: 121 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH 180
ILKK Y + E+P+I ++SLEG H++ NCEAC G C ++ PS+
Sbjct: 121 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQ----- 175
Query: 181 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 240
+P + ++Y + A + + R+ CV ++++V IVV
Sbjct: 176 ------TPRVHSIYKVEEVVKPWASGENVYSYACQN-HICRNLSIFCCCVILIVIVVIVV 228
Query: 241 K 241
K
Sbjct: 229 K 229
>gi|51972198 receptor transporting protein 2 [Homo sapiens]
Length = 225
Score = 95.1 bits (235), Expect = 5e-20
Identities = 72/237 (30%), Positives = 106/237 (44%), Gaps = 37/237 (15%)
Query: 8 WEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSSCQRSWASAQ 66
W++ F E ++ AKP +W L +D NL+ LA GWKQY +Q A G F CS C +W SA
Sbjct: 10 WKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAH 69
Query: 67 VQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQHILKKY 126
V IL H + + G VRMR+F Q C +C ++ + ++ ++ NL+ + ++
Sbjct: 70 VVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 129
Query: 127 Y---GNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPHLKT 183
Y G R + G H CEAC GI KPS+ LL T
Sbjct: 130 YEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGI-------VHWKPSEKLLEEEVT 177
Query: 184 GNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 240
+S ++++ + GSGY L L C+F L +VV
Sbjct: 178 TYTS--------------EASKPRAQAGSGYNFLS-------LRWCLFWASLCLLVV 213
>gi|114687645 receptor transporting protein 1 [Homo sapiens]
Length = 263
Score = 91.7 bits (226), Expect = 5e-19
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 10/172 (5%)
Query: 8 WEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQ-RAFGWFRCSSCQRSWASAQ 66
W++ F E ++EAKP +W L +D NL+ + L+ GWKQY + A G F CS C +W S
Sbjct: 46 WKKVFYEKMEEAKPADSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPY 105
Query: 67 VQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQHILKKY 126
V IL H + + G VRMR+F Q C +C ++ + ++ ++ NL+ + ++
Sbjct: 106 VVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 165
Query: 127 YGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLL 178
YG R + H CEAC GI KPS+ LL
Sbjct: 166 YGE--RGGQYRIHVASRQDNRRHRGEFCEACQEGI-------VHWKPSEKLL 208
>gi|134288863 hypothetical protein LOC285093 [Homo sapiens]
Length = 572
Score = 84.7 bits (208), Expect = 7e-17
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 8 WEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQRSWASAQV 67
W TF + E KP+ W L + +L CL G QY +C C +W SA V
Sbjct: 9 WASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCPGTWDSAHV 68
Query: 68 QILCHTYWEHWTSQGQVRMRLFGQRCQKC---SWSQYEMPEFSSDSTMRILSNLVQHILK 124
+L H +W+ + +G V+MR++GQRC+ C Q P LS LV HIL+
Sbjct: 69 HVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPP-----GEQPFLSRLVLHILQ 123
Query: 125 KYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGIC 162
YG+G P + EG CEAC LG+C
Sbjct: 124 DCYGDG----PGPARHPREAYEGC-----CEACELGVC 152
>gi|211971095 zygote arrest 1-like [Homo sapiens]
Length = 321
Score = 34.7 bits (78), Expect = 0.078
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 21 PRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQRSWASAQVQILCHT---YWEH 77
P+ T + ++ G+ + L + Q+ + +G+F C C+ W SA V + T Y++
Sbjct: 195 PQETKSKQVPGDAASEPLRRPNFQFLEPKYGYFHCKDCKTRWESAYVWCISGTNKVYFKQ 254
Query: 78 WTSQGQVRM---RLFGQRCQKCSWSQYEMPE 105
+ Q R+ +CQ CS S P+
Sbjct: 255 LCCKCQKSFNPYRVEAIQCQTCSKSHCSCPQ 285
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 51 GWFRCSSCQRSWASA--QVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSS 108
G++ CQ W SA Q+ C + T Q + R + GQRC +C Y+ P
Sbjct: 526 GFYSFPICQACWCSALGSYQMPCSSV----TGQCECRPGVTGQRCDRCLSGAYDFPHCQG 581
Query: 109 DST 111
S+
Sbjct: 582 SSS 584
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 51 GWFRCSSCQRSWASA--QVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSS 108
G++ CQ W SA Q+ C + T Q + R + GQRC +C Y+ P
Sbjct: 526 GFYSFPICQACWCSALGSYQMPCSSV----TGQCECRPGVTGQRCDRCLSGAYDFPHCQG 581
Query: 109 DST 111
S+
Sbjct: 582 SSS 584
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 44 QYQQRAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQG--QVRMRLFGQRCQKCSWSQY 101
Q+ ++ +G++ C C W SA V W QG +V + F + CQK S++ Y
Sbjct: 321 QFLEQKYGYYHCKDCNIRWESAYV----------WCVQGTNKVYFKQFCRTCQK-SYNPY 369
Query: 102 EMPEFSSDS 110
+ + + S
Sbjct: 370 RVEDITCQS 378
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 31.6 bits (70), Expect = 0.66
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 76 EHWTSQGQVRMRLFGQRCQKCSW------SQYEMPEFSSDSTMRIL--SNLVQHILKKY- 126
E T + R G+RC C+ S Y P S+D+ ++L +V
Sbjct: 441 EDLTGRCYCRPNFSGERCDVCAEGFTGFPSCYPTPSSSNDTREQVLPAGQIVNCDCSAAG 500
Query: 127 -YGNGTRKSPEMPVIL-EVSLEGSHDTANCEACTLGICGQGLKSC 169
GN RK P + L + + +G+H CE C G G G + C
Sbjct: 501 TQGNACRKDPRVGRCLCKPNFQGTH----CELCAPGFYGPGCQPC 541
>gi|115527080 metastasis associated protein [Homo sapiens]
Length = 715
Score = 31.2 bits (69), Expect = 0.86
Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 42/190 (22%)
Query: 45 YQQRAFGWFRCSSCQRSWASAQVQI-LCHTYWEHWTSQGQVRM--RLFGQR--CQKCSWS 99
Y +++ W+ SW +Q LC + W +W G ++M RL G+R + + S
Sbjct: 397 YTTQSYQWY-------SWGPPNMQCRLCASCWTYWKKYGGLKMPTRLDGERPGPNRSNMS 449
Query: 100 QYEMPEFSSDS-----------------TMRILSNLVQHILKKYYGNGTRKSPEMPVILE 142
+ +P SS S RI L + IL+ ++ + P +P+
Sbjct: 450 PHGLPARSSGSPKFAMKTRQAFYLHTTKLTRIARRLCREILRPWH---AARHPYLPI--- 503
Query: 143 VSLEGSHDTANCEACTLGICGQG---LKSCMTKPSKSLLPHLKTGNSSPGIGAVYLANQA 199
+ A C A L Q LK + KP +++L +L+T P V +
Sbjct: 504 ---NSAAIKAECTA-RLPEASQSPLVLKQAVRKPLEAVLRYLETHPRPPKPDPVKSVSSV 559
Query: 200 KNQSAEAKEA 209
+ AK A
Sbjct: 560 LSSLTPAKVA 569
>gi|169160873 PREDICTED: similar to hCG2040319 [Homo sapiens]
Length = 274
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 7 TWEQTFQELIQEAKPRATWTL--KLDGNLQ 34
TW Q F+ +I+E + R WT KLDG+L+
Sbjct: 59 TWYQEFKAIIREQQTRPIWTAEDKLDGSLE 88
>gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens]
Length = 274
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 7 TWEQTFQELIQEAKPRATWTL--KLDGNLQ 34
TW Q F+ +I+E + R WT KLDG+L+
Sbjct: 59 TWYQEFKAIIREQQTRPIWTAEDKLDGSLE 88
>gi|239741226 PREDICTED: similar to hCG2040319 [Homo sapiens]
Length = 274
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 7 TWEQTFQELIQEAKPRATWTL--KLDGNLQ 34
TW Q F+ +I+E + R WT KLDG+L+
Sbjct: 59 TWYQEFKAIIREQQTRPIWTAEDKLDGSLE 88
>gi|32261332 seizure related 6 homolog (mouse)-like precursor [Homo
sapiens]
Length = 1024
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 134 SPEMPVILEVSLEGSHDTANCEACTLG-ICGQGLKSCMTKPSKSLLPHLKTGNSS----- 187
S V+ E+ L+G+ +A+ + L + + + P K LP LK NS+
Sbjct: 74 SQSAEVLGELVLDGTAPSAHHDIPALSPLLPEEARPKHALPPKKKLPSLKQVNSARKQLR 133
Query: 188 PGIGAVYLANQAKNQSA-EAKEAKGSGYEKLGPSRDPDPL 226
P + +A +Q A + + S EK GP DPDP+
Sbjct: 134 PKATSAATVQRAGSQPASQGLDLLSSSTEKPGPPGDPDPI 173
>gi|4758528 hepatocyte growth factor-regulated tyrosine kinase
substrate [Homo sapiens]
Length = 777
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 47 QRAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEF 106
+RA W C R +VQ T H + GQ+ C KCS +P+F
Sbjct: 155 ERAPDWVDAEECHR----CRVQFGVMTRKHHCRACGQIF-------CGKCSSKYSTIPKF 203
Query: 107 SSDSTMRILSNLVQHILKKYYGNGTRKSPEMP 138
+ +R+ + + +K G T + E+P
Sbjct: 204 GIEKEVRVCEPCYEQLNRKAEGKAT-STTELP 234
>gi|223633947 zinc finger, CCHC domain containing 24 [Homo sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 3.3
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 18/58 (31%)
Query: 44 QYQQRAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQY 101
Q ++R FG ++C C+R W S W + GQ C KC + Y
Sbjct: 161 QGKKRCFGEYKCPKCKRKWMSG----------NSWAN--------MGQECIKCHINVY 200
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 147 GSHDTANCEACTLGICGQGLKS-------CMTKPSKSLLPHLKTG 184
G+ D A+CE C G G + + C K S S + HL+TG
Sbjct: 875 GNTDGAHCERCADGFYGDAVTAKNCRACECHVKGSHSAVCHLETG 919
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 28.5 bits (62), Expect = 5.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 50 FGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMP 104
FG C +CQ S A + LC E + Q R FG RC +C Q+ P
Sbjct: 823 FGPTGCQACQCSHEGA-LSSLC----EKTSGQCLCRTGAFGLRCDRCQRGQWGFP 872
>gi|20070166 potassium voltage-gated channel, subfamily F, member 1
[Homo sapiens]
Length = 494
Score = 28.1 bits (61), Expect = 7.3
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 91 QRCQKCSWSQYEMPEFSSDS-TMRILSNLVQHILKKYYGNGTRKSPEMPVILEVSLEGSH 149
+RCQKC W E PE S + + +LS L+ + GT PE+ V+ H
Sbjct: 162 RRCQKCVWKFLEKPESSCPARVVAVLSFLLILVSSVVMCMGT--IPELQVLDAEGNRVEH 219
Query: 150 DT-ANCEACTLG 160
T N E +G
Sbjct: 220 PTLENVETACIG 231
>gi|217416354 sphingosine kinase type 1-interacting protein isoform
1 [Homo sapiens]
Length = 1700
Score = 27.7 bits (60), Expect = 9.5
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 91 QRCQKCSWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGTRKSPEMPVILEVSLEGSH- 149
Q K + S P +S +T +++NLV + K G R L+ L SH
Sbjct: 760 QAWTKATESSSSSPLSNSHNTSLVINNLVDGMYSKQDKGGVRPGLFKNPTLQSQLSRSHR 819
Query: 150 -------DTANCEACTLGICGQGLKSCMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQ 202
T++ E GI G+ KS S++ G SP + +Q+++
Sbjct: 820 VPDSSTATTSSKEIYLKGIAGEDTKS--PHHSENECRASSEGQRSPTV------SQSRSG 871
Query: 203 SAEAKEA 209
S EA+E+
Sbjct: 872 SQEAEES 878
>gi|217416352 sphingosine kinase type 1-interacting protein isoform
2 [Homo sapiens]
Length = 1671
Score = 27.7 bits (60), Expect = 9.5
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 91 QRCQKCSWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGTRKSPEMPVILEVSLEGSH- 149
Q K + S P +S +T +++NLV + K G R L+ L SH
Sbjct: 760 QAWTKATESSSSSPLSNSHNTSLVINNLVDGMYSKQDKGGVRPGLFKNPTLQSQLSRSHR 819
Query: 150 -------DTANCEACTLGICGQGLKSCMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQ 202
T++ E GI G+ KS S++ G SP + +Q+++
Sbjct: 820 VPDSSTATTSSKEIYLKGIAGEDTKS--PHHSENECRASSEGQRSPTV------SQSRSG 871
Query: 203 SAEAKEA 209
S EA+E+
Sbjct: 872 SQEAEES 878
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,441,928
Number of Sequences: 37866
Number of extensions: 465769
Number of successful extensions: 1033
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 30
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.