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Search of human proteins with 5453948
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453948 protein phosphatase 1, regulatory subunit 3D [Homo
sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453948 protein phosphatase 1, regulatory subunit 3D [Homo sa... 624 e-179
gi|223278393 protein phosphatase 1, regulatory (inhibitor) subun... 103 1e-22
gi|153792466 protein phosphatase 1, regulatory (inhibitor) subun... 99 6e-21
gi|4885559 protein phosphatase 1, regulatory (inhibitor) subunit... 89 4e-18
gi|167614502 protein phosphatase 1, regulatory (inhibitor) subun... 84 2e-16
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula... 49 7e-06
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni... 49 7e-06
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 40 0.003
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 40 0.003
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 40 0.003
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 40 0.003
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 40 0.003
gi|239748384 PREDICTED: hypothetical protein XP_002346651 [Homo ... 39 0.004
gi|239742312 PREDICTED: hypothetical protein XP_002342488 [Homo ... 39 0.004
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 39 0.007
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 38 0.009
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 37 0.021
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 37 0.028
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 37 0.028
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 37 0.028
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 36 0.036
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 36 0.036
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 36 0.036
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens] 36 0.036
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 36 0.047
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 36 0.047
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 35 0.061
gi|30089966 CDC42 effector protein 5 [Homo sapiens] 35 0.061
gi|239582765 ral guanine nucleotide dissociation stimulator-like... 35 0.080
gi|32880229 selenoprotein O [Homo sapiens] 35 0.080
>gi|5453948 protein phosphatase 1, regulatory subunit 3D [Homo
sapiens]
Length = 299
Score = 624 bits (1609), Expect = e-179
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC 60
MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
Sbjct: 1 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC 60
Query: 61 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN 120
DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN
Sbjct: 61 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN 120
Query: 121 AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE 180
AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE
Sbjct: 121 AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE 180
Query: 181 RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF 240
RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF
Sbjct: 181 RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF 240
Query: 241 PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI 299
PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI
Sbjct: 241 PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI 299
>gi|223278393 protein phosphatase 1, regulatory (inhibitor) subunit
3G [Homo sapiens]
Length = 358
Score = 103 bits (258), Expect = 1e-22
Identities = 108/316 (34%), Positives = 135/316 (42%), Gaps = 75/316 (23%)
Query: 31 DGGVALE-PRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARS--LPSSP-------- 79
DGG A E P G +P AP + L RARS LP+ P
Sbjct: 40 DGGGASETPSPDAQLGDRPLSPKEEAAPQEQEELLECRRRCRARSFSLPADPILQAAKFL 99
Query: 80 -ERRQKAA-----GAPGAACRPG--CSQ-KLRVRFADALGLELAQVKVFNAGDDPSVPLH 130
+++Q+A GA A PG C++ K RV+FAD LGL LA VK F+ ++P VP
Sbjct: 100 QQQQQQAVALGGEGAEDAQLGPGGCCAKCKKRVQFADTLGLSLASVKHFSEAEEPQVPPA 159
Query: 131 VLSRLAINSDLCCSSQDLEFTLHCLVP------------------DFPPPVEAADFGERL 172
VLSRL ++DLE L P P AA ERL
Sbjct: 160 VLSRL---RSFPMRAEDLEQLGGLLAAAAVAAPLSAPPSRLRPLFQLPGPSAAA---ERL 213
Query: 173 QRQLVCLERVTCSDLG---ISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWR----- 224
QRQ VCLERV CS + G+ RV + + V VRYTF+ WRS + A +
Sbjct: 214 QRQRVCLERVQCSTASGAEVKGSGRVLSCPGPRAVTVRYTFTEWRSFLDVPAELQPEPLE 273
Query: 225 ---------------GPAGPEGTEDVFTFGFPVPPFLL--------ELGSRVHFAVRYQV 261
G A E + F F +PP L E G VHFAV Y+
Sbjct: 274 PQQPEAPSGASEPGSGDAKKEPGAECFHFSLCLPPGLQPEDEEDADERGVAVHFAVCYRC 333
Query: 262 AGAEYWDNNDHRDYSL 277
A EYWDNN +Y+L
Sbjct: 334 AQGEYWDNNAGANYTL 349
>gi|153792466 protein phosphatase 1, regulatory (inhibitor) subunit
3B [Homo sapiens]
Length = 285
Score = 98.6 bits (244), Expect = 6e-21
Identities = 64/179 (35%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 100 KLRVRFADALGLELAQVKVFNAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDF 159
K RV FAD GL L VKVF+ DDP ++ L N +++ F L DF
Sbjct: 60 KKRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVL-----DF 114
Query: 160 PPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHE 218
P + DF RLQ VCLE D I+GTV+V N+AFEK V +R TF W+S +
Sbjct: 115 SQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTD 174
Query: 219 AVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSL 277
++ D F+F +P ++ R+ FAV Y+ G YWD+N ++Y +
Sbjct: 175 FPCQYVKDTYAGSDRDTFSFDISLPE-KIQSYERMEFAVYYECNGQTYWDSNRGKNYRI 232
>gi|4885559 protein phosphatase 1, regulatory (inhibitor) subunit 3C
[Homo sapiens]
Length = 317
Score = 89.4 bits (220), Expect = 4e-18
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 10/231 (4%)
Query: 50 APPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADAL 109
+PP D R + + + L S + KA C ++K RV FAD+
Sbjct: 33 SPPVKSFLGPYDEFQRRHFVNKLKPLKSCLNIKHKAKSQNDWKCSHNQAKK-RVVFADSK 91
Query: 110 GLELAQVKVFNAGDDPSVPLHVLS--RLAINSDLCCSSQDLEFTLHCLVPDFPPP-VEAA 166
GL L + VF+ D P P L L +N SS L+ DFP P +
Sbjct: 92 GLSLTAIHVFS--DLPEEPAWDLQFDLLDLND---ISSALKHHEEKNLILDFPQPSTDYL 146
Query: 167 DFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGP 226
F Q+ VCLE + + ++GTV+V NV+FEK+V +R TF W++ + +
Sbjct: 147 SFRSHFQKNFVCLENCSLQERTVTGTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKN 206
Query: 227 AGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSL 277
D F+F +PP ++ ++ F + Y G +WDNND ++Y +
Sbjct: 207 VYGGTDSDTFSFAIDLPP-VIPTEQKIEFCISYHANGQVFWDNNDGQNYRI 256
>gi|167614502 protein phosphatase 1, regulatory (inhibitor) subunit
3A [Homo sapiens]
Length = 1122
Score = 84.0 bits (206), Expect = 2e-16
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 102 RVRFADALGLELAQVKVFNAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPP 161
RV FAD+ G L VK F+ + PS + + +D+ + + + L P F
Sbjct: 63 RVSFADSFGFNLVSVKEFDCWELPSAS----TTFDLGTDIFHTEE------YVLAPLFDL 112
Query: 162 PVEAADFGERLQRQLVCLERVTCSDLG---ISGTVRVCNVAFEKQVAVRYTFSGWRSTHE 218
P D ++LQ Q LE T S LG I G +RV NV+FEK V VR + W++ ++
Sbjct: 113 PSSKEDLMQQLQIQKAILES-TESLLGSTSIKGIIRVLNVSFEKLVYVRMSLDDWQTHYD 171
Query: 219 AVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLT 278
+A + P +G D F+F + P + GS+V F +RY+ + +W NN+ +Y+
Sbjct: 172 ILAEYV-PNSCDGETDQFSFKIVLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYTFI 230
Query: 279 CR 280
C+
Sbjct: 231 CQ 232
>gi|239757810 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 3F [Homo sapiens]
Length = 724
Score = 48.5 bits (114), Expect = 7e-06
Identities = 73/287 (25%), Positives = 98/287 (34%), Gaps = 66/287 (22%)
Query: 44 PGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRV 103
P SP P T + PR R + A LP + RR + G PGA
Sbjct: 16 PPSPAAGEPRTSVEAAVAPR-RVLFADEALGLPLAQLRRYRPWGGPGAG----------- 63
Query: 104 RFADALGLELAQ---VKVFNAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFP 160
+ A A G + + G+D S LC F L VP F
Sbjct: 64 KMAAAAGQDGGGGGGADEDDDGEDGDEGEEEEEACPEPSPLCPVPAGGGFYL---VPTFS 120
Query: 161 PPVEAADFGERLQRQLVCLERVTCSDLGISG----------------TVRVCNVAFEKQV 204
P ERL R +V LE + + G VRV N +FEK V
Sbjct: 121 LPPAPGRL-ERLGRVMVELEALLPPPGAVPGGAGVWVPGGRPPVLRGLVRVLNRSFEKAV 179
Query: 205 AVRYTFSGWRSTHEAVAR-------WRGPAGPEGTEDVFTFGFPVPP------------- 244
VR + GW S + AR W G G + + G + P
Sbjct: 180 HVRASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGLGLGPGQASASSPDDGGR 239
Query: 245 ---FLLEL--------GSRVHFAVRYQVAGAEYWDNNDHRDYSLTCR 280
F +L G+R+ F VRY+ +W NN R+Y++ R
Sbjct: 240 TDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTVLLR 286
>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
3F [Homo sapiens]
Length = 799
Score = 48.5 bits (114), Expect = 7e-06
Identities = 73/287 (25%), Positives = 98/287 (34%), Gaps = 66/287 (22%)
Query: 44 PGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRV 103
P SP P T + PR R + A LP + RR + G PGA
Sbjct: 16 PPSPAAGEPRTSVEAAVAPR-RVLFADEALGLPLAQLRRYRPWGGPGAG----------- 63
Query: 104 RFADALGLELAQ---VKVFNAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFP 160
+ A A G + + G+D S LC F L VP F
Sbjct: 64 KMAAAAGQDGGGGGGADEDDDGEDGDEGEEEEEACPEPSPLCPVPAGGGFYL---VPTFS 120
Query: 161 PPVEAADFGERLQRQLVCLERVTCSDLGISG----------------TVRVCNVAFEKQV 204
P ERL R +V LE + + G VRV N +FEK V
Sbjct: 121 LPPAPGRL-ERLGRVMVELEALLPPPGAVPGGAGVWVPGGRPPVLRGLVRVLNRSFEKAV 179
Query: 205 AVRYTFSGWRSTHEAVAR-------WRGPAGPEGTEDVFTFGFPVPP------------- 244
VR + GW S + AR W G G + + G + P
Sbjct: 180 HVRASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGLGLGPGQASASSPDDGGR 239
Query: 245 ---FLLEL--------GSRVHFAVRYQVAGAEYWDNNDHRDYSLTCR 280
F +L G+R+ F VRY+ +W NN R+Y++ R
Sbjct: 240 TDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTVLLR 286
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/73 (45%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 39 RACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCS 98
RA RPP P R PP PAP PR R AR+ P R +AAGA G R S
Sbjct: 94 RARRPPPQPSRPAPPPPAPPSALPRGG----RAARA--GGPGSRARAAGARGCRLR---S 144
Query: 99 QKLRVRFADALGL 111
Q + VR ALGL
Sbjct: 145 QLVPVR---ALGL 154
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/73 (45%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 39 RACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCS 98
RA RPP P R PP PAP PR R AR+ P R +AAGA G R S
Sbjct: 77 RARRPPPQPSRPAPPPPAPPSALPRGG----RAARA--GGPGSRARAAGARGCRLR---S 127
Query: 99 QKLRVRFADALGL 111
Q + VR ALGL
Sbjct: 128 QLVPVR---ALGL 137
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/73 (45%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 39 RACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCS 98
RA RPP P R PP PAP PR R AR+ P R +AAGA G R S
Sbjct: 85 RARRPPPQPSRPAPPPPAPPSALPRGG----RAARA--GGPGSRARAAGARGCRLR---S 135
Query: 99 QKLRVRFADALGL 111
Q + VR ALGL
Sbjct: 136 QLVPVR---ALGL 145
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/73 (45%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 39 RACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCS 98
RA RPP P R PP PAP PR R AR+ P R +AAGA G R S
Sbjct: 77 RARRPPPQPSRPAPPPPAPPSALPRGG----RAARA--GGPGSRARAAGARGCRLR---S 127
Query: 99 QKLRVRFADALGL 111
Q + VR ALGL
Sbjct: 128 QLVPVR---ALGL 137
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/73 (45%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 39 RACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCS 98
RA RPP P R PP PAP PR R AR+ P R +AAGA G R S
Sbjct: 85 RARRPPPQPSRPAPPPPAPPSALPRGG----RAARA--GGPGSRARAAGARGCRLR---S 135
Query: 99 QKLRVRFADALGL 111
Q + VR ALGL
Sbjct: 136 QLVPVR---ALGL 145
>gi|239748384 PREDICTED: hypothetical protein XP_002346651 [Homo
sapiens]
Length = 246
Score = 39.3 bits (90), Expect = 0.004
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 25 SCLSDLDGGVALEPRACR---PPGSPGRAPPPTPAPSGCDPRLRPIIL----RRARSLPS 77
SC + + R CR PG+P PPP P+ S C P R RRA P+
Sbjct: 168 SCGPEKPARIENPERPCRRTPAPGAPRLQPPPPPSCS-CQPGSRSSECLEPERRAPPRPA 226
Query: 78 SPERRQKAAGAPGAA 92
+P +R++AA AP +A
Sbjct: 227 NPAKRERAAAAPRSA 241
>gi|239742312 PREDICTED: hypothetical protein XP_002342488 [Homo
sapiens]
Length = 246
Score = 39.3 bits (90), Expect = 0.004
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 25 SCLSDLDGGVALEPRACR---PPGSPGRAPPPTPAPSGCDPRLRPIIL----RRARSLPS 77
SC + + R CR PG+P PPP P+ S C P R RRA P+
Sbjct: 168 SCGPEKPARIENPERPCRRTPAPGAPRLQPPPPPSCS-CQPGSRSSECLEPERRAPPRPA 226
Query: 78 SPERRQKAAGAPGAA 92
+P +R++AA AP +A
Sbjct: 227 NPAKRERAAAAPRSA 241
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/103 (33%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 1 MSRGPSSAVLPSALGSRKL--------GPRSLSCLSDLDGGVALEPRACRPPGSPGRAP- 51
+SRG ALG R GPR L L AL P RPP PGR
Sbjct: 821 VSRGHRRTPSDGALGQRGPPEPAGHGPGPRDLLDFPRLPDPQALFPARRRPPEFPGRPTT 880
Query: 52 ---PPTPAPSGCDPRLRP-IILRRARSLPSSPERRQKAAGAPG 90
P P P+ PRL P ++ R+L SP R +PG
Sbjct: 881 LTFAPRPRPAASRPRLDPWKLVSFGRTLTISPPSRPDTPESPG 923
Score = 28.5 bits (62), Expect = 7.5
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 4 GPSSAVLPSALGSRKLGPRSLSCLSDLDGGVAL--------EPRACRPPGSPGRAPPPTP 55
GP + PSA SLS +SD + +L P A PP SP P PTP
Sbjct: 735 GPGLGLAPSATLV------SLSSVSDCNSTRSLLRSDSDEAAPAAPSPPPSP---PAPTP 785
Query: 56 APSGCDPRLRPIILRRARSLPSSPER 81
PS P P++ S P +
Sbjct: 786 TPS---PSTNPLVDLELESFKKDPRQ 808
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 37 EPRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSS-PERRQKAAGAPGAACRP 95
+P PP P R PPP P P PR R R RS P S P+ R+ +G + P
Sbjct: 117 QPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRPQTRRSCSGDLDGSGDP 176
Query: 96 G 96
G
Sbjct: 177 G 177
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 37.0 bits (84), Expect = 0.021
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 36 LEPRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAP--GAAC 93
L P + P GRA P PA GCD P R + S+P R A G+ G
Sbjct: 258 LSPESAPGPARRGRASVPGPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSARRGRDS 317
Query: 94 RPGCSQKLRVRFADA 108
PG + ++R +DA
Sbjct: 318 APGPALRVRTARSDA 332
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 36.6 bits (83), Expect = 0.028
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 21 PRSLSCLSDLDG----GVALEPRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLP 76
P+ CL L+ G L+P R PG APP +P+ P +P + R L
Sbjct: 169 PQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPL-PARQPH--KGVRPLG 225
Query: 77 SSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKV--FNAGDDPSVPLHV 131
R +AAG P C PG + V DA +AQV+V + P PL V
Sbjct: 226 CCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDA----VAQVRVQSHSFAPRPRAPLAV 278
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 36.6 bits (83), Expect = 0.028
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 5 PSSAVLPSALGSRKLGPRSLSCLSDLDG-----GVALEPRACRPPGSPGRAPPPTPAPSG 59
P + LP + + P +L L D D A EPR+ PG PG + +PA G
Sbjct: 291 PEADTLPRSGEQERKNPMALYILKDKDSPETEENPAPEPRSATEPGPPGYSV--SPAVPG 348
Query: 60 CDPRLRPIILRRARSLPSSPERR----QKAAGAPGAACRPGCSQ 99
P L +R AR P SP R + + P A PG S+
Sbjct: 349 RSPGLP---IRSARRYPRSPARSPATGRTHSSPPRAPSSPGRSR 389
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 36.6 bits (83), Expect = 0.028
Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 37 EPRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAG--APGAACR 94
EP PP P PP PAP PR P LP+SPE ++AAG P
Sbjct: 21 EPPPQPPPPPPPTPPPGEPAPVPAAPRYLP-------PLPASPETPERAAGPSEPLGEVA 73
Query: 95 PGCSQKLRVRFAD-----ALGLELAQVKVFNAGDDPSVP 128
P C R AD L L+ A +V AGD P
Sbjct: 74 PRC------RGADELPPPPLPLQPAGQEVAAAGDSGEGP 106
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 38 PRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACR 94
P C P G RAPPP P P+ R + R R++P P R + + P AA R
Sbjct: 38 PGPCPPEGLVPRAPPPGPRPTAAATRATFRVPER-RTVPPCPRRPARPSQPPSAARR 93
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 38 PRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACR 94
P C P G RAPPP P P+ R + R R++P P R + + P AA R
Sbjct: 38 PGPCPPEGLVPRAPPPGPRPTAAATRATFRVPER-RTVPPCPRRPARPSQPPSAARR 93
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 38 PRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACR 94
P C P G RAPPP P P+ R + R R++P P R + + P AA R
Sbjct: 38 PGPCPPEGLVPRAPPPGPRPTAAATRATFRVPER-RTVPPCPRRPARPSQPPSAARR 93
>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 38 PRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACR 94
P C P G RAPPP P P+ R + R R++P P R + + P AA R
Sbjct: 38 PGPCPPEGLVPRAPPPGPRPTAAATRATFRVPER-RTVPPCPRRPARPSQPPSAARR 93
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 35.8 bits (81), Expect = 0.047
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 42 RPPGSPGRAPPPTPAPSGCD---------PRLRPIILRRARSLPSSPERRQKAAGAPGAA 92
RP SP AP PTPAPS P P + P AG+ G
Sbjct: 17 RPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSGGAGSGGDP 76
Query: 93 CRPGCSQKLRV--RFADALGL----ELAQVKVFNA 121
RPG SQ+ R R A GL +L ++ VF+A
Sbjct: 77 ARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSA 111
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 35.8 bits (81), Expect = 0.047
Identities = 38/112 (33%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 2 SRGPSSAVLPSALGSRKL----GPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAP 57
+ GP+ PS RKL G R S S+ G + + A PP R PPTP P
Sbjct: 115 AEGPARGAWPSVTEMRKLFGGPGSRRPSADSESPGTPSPDGAAWEPPARESR-QPPTPPP 173
Query: 58 SGCDPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADAL 109
C P LR AR L + PE G RP Q+ R AD L
Sbjct: 174 RTCFPLAG---LRSARPL-TGPE-------TEGRLRRPQQQQERAQRPADGL 214
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 35.4 bits (80), Expect = 0.061
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 44 PGSPGRAPPPTPAPSGCDPRLRPI--ILRRARSLPSSPERRQKAAGAPGAACRPG 96
PG+PG PP + G +P P+ L R+ SLP P K AG PG A PG
Sbjct: 463 PGTPGTTPPAASSSRGGEPGPGPLPRSLSRSNSLP-HPAGGGK-AGGPGVAAEPG 515
>gi|30089966 CDC42 effector protein 5 [Homo sapiens]
Length = 148
Score = 35.4 bits (80), Expect = 0.061
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 25 SCLSDLDGGVALEPRACRPPGSPGRAPPP-----TPAPSGCDPRLR------PIILRRAR 73
S LS GG EPRA PP R+PPP + APS DP L P +L
Sbjct: 47 SFLSRHGGGPPPEPRA--PPAGAPRSPPPPAVPQSAAPSPADPLLSFHLDLGPSMLDAVL 104
Query: 74 SLPSSPERRQKAAGAPGAACRPG-------CSQKLRVRFADALGL 111
+ + R + AA P A RPG C + D +GL
Sbjct: 105 GVMDA-ARPEAAAAKPDAEPRPGTQPPQARCRPNADLELNDVIGL 148
>gi|239582765 ral guanine nucleotide dissociation stimulator-like 3
isoform 1 [Homo sapiens]
Length = 716
Score = 35.0 bits (79), Expect = 0.080
Identities = 43/128 (33%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 5 PSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC-DPR 63
P +A PS+ R R +S L +A E ++ P GSPG P +P S C P
Sbjct: 504 PPAASCPSSPRIR----RRISLTKRLSAKLARE-KSSSPSGSPG--DPSSPTSSLCISPS 556
Query: 64 LRPIILRRARSLPSSPERRQKAAGAPGAACRP-GCSQKLRVRFADALGLELAQVKVFNAG 122
+ P S PSSP R AG+P A+ P G S KL L L+L + F
Sbjct: 557 VSP------GSPPSSPRSRDAPAGSPPASPGPQGPSTKL------PLSLDLPSPRPFALP 604
Query: 123 -DDPSVPL 129
P +PL
Sbjct: 605 LGSPRIPL 612
>gi|32880229 selenoprotein O [Homo sapiens]
Length = 669
Score = 35.0 bits (79), Expect = 0.080
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 21 PRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGCDPRLRPIILRRARSLP-SSP 79
PR L+ L + + P PPG G P P P C R++P LR+ R + S P
Sbjct: 42 PRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEP 101
Query: 80 ERRQKAAGAPGA 91
GAP A
Sbjct: 102 ALALLGLGAPPA 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,495,776
Number of Sequences: 37866
Number of extensions: 891936
Number of successful extensions: 7782
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 6761
Number of HSP's gapped (non-prelim): 1191
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.