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Search of human proteins with 54234040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo
sapiens]
(965 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens] 1904 0.0
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens] 1895 0.0
gi|62865871 coiled-coil domain containing 132 isoform a [Homo sa... 44 0.001
gi|237858619 polyamine modulated factor 1 binding protein 1 isof... 40 0.008
gi|223941891 protein tyrosine phosphatase, non-receptor type 3 i... 39 0.031
gi|223941885 protein tyrosine phosphatase, non-receptor type 3 i... 39 0.031
gi|223941879 protein tyrosine phosphatase, non-receptor type 3 i... 39 0.031
gi|223941888 protein tyrosine phosphatase, non-receptor type 3 i... 37 0.089
gi|223941882 protein tyrosine phosphatase, non-receptor type 3 i... 37 0.089
gi|223941876 protein tyrosine phosphatase, non-receptor type 3 i... 37 0.089
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 35 0.26
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 35 0.26
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 35 0.26
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 35 0.44
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 35 0.44
gi|206597470 neural precursor cell expressed, developmentally do... 34 0.58
gi|206597468 neural precursor cell expressed, developmentally do... 34 0.58
gi|23097254 neural precursor cell expressed, developmentally dow... 34 0.58
gi|206597465 neural precursor cell expressed, developmentally do... 34 0.58
gi|91982772 mucin 17 [Homo sapiens] 34 0.58
gi|54124343 hypothetical protein LOC387680 [Homo sapiens] 34 0.58
gi|30794488 kinesin family member 27 [Homo sapiens] 33 0.98
gi|48762942 huntingtin interacting protein-1-related [Homo sapiens] 33 1.3
gi|73858570 serpin peptidase inhibitor, clade G, member 1 precur... 33 1.3
gi|73858568 serpin peptidase inhibitor, clade G, member 1 precur... 33 1.3
gi|239750456 PREDICTED: similar to KIAA0655 protein [Homo sapiens] 33 1.3
gi|154090959 hypothetical protein LOC55747 [Homo sapiens] 33 1.3
gi|47132622 5'-methylthioadenosine phosphorylase [Homo sapiens] 33 1.7
gi|237858621 polyamine modulated factor 1 binding protein 1 isof... 33 1.7
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 33 1.7
>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
Length = 965
Score = 1904 bits (4932), Expect = 0.0
Identities = 965/965 (100%), Positives = 965/965 (100%)
Query: 1 MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPTVTDQHRWTVYHSKVN 60
MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPTVTDQHRWTVYHSKVN
Sbjct: 1 MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPTVTDQHRWTVYHSKVN 60
Query: 61 LPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHE 120
LPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHE
Sbjct: 61 LPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHE 120
Query: 121 RCKNICPPKDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAG 180
RCKNICPPKDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAG
Sbjct: 121 RCKNICPPKDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAG 180
Query: 181 GKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLRKTSQAV 240
GKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLRKTSQAV
Sbjct: 181 GKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLRKTSQAV 240
Query: 241 KMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQPTVQVLLSTSEF 300
KMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQPTVQVLLSTSEF
Sbjct: 241 KMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQPTVQVLLSTSEF 300
Query: 301 VGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLED 360
VGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLED
Sbjct: 301 VGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLED 360
Query: 361 DCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINKVSQTEEIDTDVV 420
DCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINKVSQTEEIDTDVV
Sbjct: 361 DCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINKVSQTEEIDTDVV 420
Query: 421 VKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEI 480
VKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEI
Sbjct: 421 VKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEI 480
Query: 481 SQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSV 540
SQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSV
Sbjct: 481 SQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSV 540
Query: 541 SEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQELLYSASDICHD 600
SEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQELLYSASDICHD
Sbjct: 541 SEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQELLYSASDICHD 600
Query: 601 RAVKFLMSRAKDGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFV 660
RAVKFLMSRAKDGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFV
Sbjct: 601 RAVKFLMSRAKDGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFV 660
Query: 661 NRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKSGATEERKPAEVL 720
NRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKSGATEERKPAEVL
Sbjct: 661 NRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKSGATEERKPAEVL 720
Query: 721 IVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAG 780
IVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAG
Sbjct: 721 IVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAG 780
Query: 781 ALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHD 840
ALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHD
Sbjct: 781 ALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHD 840
Query: 841 HIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQM 900
HIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQM
Sbjct: 841 HIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQM 900
Query: 901 LFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEI 960
LFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEI
Sbjct: 901 LFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEI 960
Query: 961 WEQKR 965
WEQKR
Sbjct: 961 WEQKR 965
>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
Length = 977
Score = 1895 bits (4909), Expect = 0.0
Identities = 965/977 (98%), Positives = 965/977 (98%), Gaps = 12/977 (1%)
Query: 1 MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPT------------VTD 48
MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPT VTD
Sbjct: 1 MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPTGDSHSLYVAPSLVTD 60
Query: 49 QHRWTVYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVY 108
QHRWTVYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVY
Sbjct: 61 QHRWTVYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVY 120
Query: 109 QQEISQREKIHERCKNICPPKDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFN 168
QQEISQREKIHERCKNICPPKDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFN
Sbjct: 121 QQEISQREKIHERCKNICPPKDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFN 180
Query: 169 SVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHE 228
SVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHE
Sbjct: 181 SVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHE 240
Query: 229 LQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQ 288
LQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQ
Sbjct: 241 LQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQ 300
Query: 289 PTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFST 348
PTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFST
Sbjct: 301 PTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFST 360
Query: 349 YSHSDLNRPLEDDCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINK 408
YSHSDLNRPLEDDCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINK
Sbjct: 361 YSHSDLNRPLEDDCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINK 420
Query: 409 VSQTEEIDTDVVVKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL 468
VSQTEEIDTDVVVKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL
Sbjct: 421 VSQTEEIDTDVVVKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL 480
Query: 469 DKNQRTRELEEISQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNA 528
DKNQRTRELEEISQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNA
Sbjct: 481 DKNQRTRELEEISQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNA 540
Query: 529 SPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQ 588
SPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQ
Sbjct: 541 SPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQ 600
Query: 589 ELLYSASDICHDRAVKFLMSRAKDGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSL 648
ELLYSASDICHDRAVKFLMSRAKDGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSL
Sbjct: 601 ELLYSASDICHDRAVKFLMSRAKDGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSL 660
Query: 649 LGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKS 708
LGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKS
Sbjct: 661 LGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKS 720
Query: 709 GATEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYF 768
GATEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYF
Sbjct: 721 GATEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYF 780
Query: 769 NSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSML 828
NSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSML
Sbjct: 781 NSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSML 840
Query: 829 RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEA 888
RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEA
Sbjct: 841 RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEA 900
Query: 889 IFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK 948
IFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK
Sbjct: 901 IFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK 960
Query: 949 GLKDLDLNMAEIWEQKR 965
GLKDLDLNMAEIWEQKR
Sbjct: 961 GLKDLDLNMAEIWEQKR 977
>gi|62865871 coiled-coil domain containing 132 isoform a [Homo
sapiens]
Length = 964
Score = 43.5 bits (101), Expect = 0.001
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 626 LSRLMETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQADV 685
+SRLM+ E+ CG KS L +++ Q++ + +H R +L + L+NE W+ V
Sbjct: 419 ISRLMQV----GEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPV 474
Query: 686 PAEFQDL 692
+ F L
Sbjct: 475 KSNFSIL 481
>gi|237858619 polyamine modulated factor 1 binding protein 1 isoform
a [Homo sapiens]
Length = 1007
Score = 40.4 bits (93), Expect = 0.008
Identities = 65/288 (22%), Positives = 129/288 (44%), Gaps = 30/288 (10%)
Query: 224 TSQHELQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMAT 283
TSQ +QD ++ + + L AQ+DK + + H L+ +T+ + Y+ L +
Sbjct: 685 TSQQVIQDLNKEIALQKESLMSLQAQLDKAL-QKEKHYLQTTITK----EAYDALSRKSA 739
Query: 284 VHQ---TQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQL-CELEKLID 339
Q TQ ++ TSE + TQE Q + I ++ +L EL KL
Sbjct: 740 ACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRG 799
Query: 340 KMMIAEFSTYSHSDLNRPLED-DCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAK 398
+E ++ ++ LE+ CQVL+ ++ +L ++ E + E+M +
Sbjct: 800 FHQESELEVHA---FDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLRE-FQEEMAALKE 855
Query: 399 NIIKQ----CVINKVSQTEEIDTDVVVKLADQMRMLNFPQWFDLLKDIFSKF-------T 447
N+++ C + + S + DT + + DQ+ M N QW K K
Sbjct: 856 NLLEDDKEPCCLPQWSVPK--DTCRLYRGNDQI-MTNLEQWAKQQKVANEKLGNQLREQV 912
Query: 448 IFLQRVKATLNIIHSVVLSVLDKNQRTRELEEISQQKNAAKDNSLDTE 495
++ ++ + +HSV++ + +N++ + +EI ++K A++ L T+
Sbjct: 913 KYIAKLSGEKDHLHSVMVHLQQENKKLK--KEIEEKKMKAENTRLCTK 958
>gi|223941891 protein tyrosine phosphatase, non-receptor type 3
isoform 6 [Homo sapiens]
Length = 581
Score = 38.5 bits (88), Expect = 0.031
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 470 KNQRTRELEEISQQKNAAKDNSLDTEVAYLIH-EGMFISDAFGEGELTPIAVDTTSQRNA 528
K + R EI + ++++ DN L E+ Y+ E +F + +G L P D+ +N
Sbjct: 46 KKRSPRLRHEIRKPRHSSADN-LANEMTYITETEDVFYTY---KGSLAPQDSDSEVSQNR 101
Query: 529 SPNSEPCSSDSVSEPECTTDSSSSKEHTSS---SAIPGGVDIMVSED 572
SP+ E S ++ ++ T SSSS +S+ S P GVD + +D
Sbjct: 102 SPHQESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 148
>gi|223941885 protein tyrosine phosphatase, non-receptor type 3
isoform 4 [Homo sapiens]
Length = 737
Score = 38.5 bits (88), Expect = 0.031
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 470 KNQRTRELEEISQQKNAAKDNSLDTEVAYLIH-EGMFISDAFGEGELTPIAVDTTSQRNA 528
K + R EI + ++++ DN L E+ Y+ E +F + +G L P D+ +N
Sbjct: 202 KKRSPRLRHEIRKPRHSSADN-LANEMTYITETEDVFYTY---KGSLAPQDSDSEVSQNR 257
Query: 529 SPNSEPCSSDSVSEPECTTDSSSSKEHTSS---SAIPGGVDIMVSED 572
SP+ E S ++ ++ T SSSS +S+ S P GVD + +D
Sbjct: 258 SPHQESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 304
>gi|223941879 protein tyrosine phosphatase, non-receptor type 3
isoform 2 [Homo sapiens]
Length = 868
Score = 38.5 bits (88), Expect = 0.031
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 470 KNQRTRELEEISQQKNAAKDNSLDTEVAYLIH-EGMFISDAFGEGELTPIAVDTTSQRNA 528
K + R EI + ++++ DN L E+ Y+ E +F + +G L P D+ +N
Sbjct: 333 KKRSPRLRHEIRKPRHSSADN-LANEMTYITETEDVFYTY---KGSLAPQDSDSEVSQNR 388
Query: 529 SPNSEPCSSDSVSEPECTTDSSSSKEHTSS---SAIPGGVDIMVSED 572
SP+ E S ++ ++ T SSSS +S+ S P GVD + +D
Sbjct: 389 SPHQESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 435
>gi|223941888 protein tyrosine phosphatase, non-receptor type 3
isoform 5 [Homo sapiens]
Length = 626
Score = 37.0 bits (84), Expect = 0.089
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 479 EISQQKNAAKDNSLDTEVAYLIH-EGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSS 537
EI + ++++ DN L E+ Y+ E +F + +G L P D+ +N SP+ E S
Sbjct: 100 EIRKPRHSSADN-LANEMTYITETEDVFYTY---KGSLAPQDSDSEVSQNRSPHQESLSE 155
Query: 538 DSVSEPECTTDSSSSKEHTSS---SAIPGGVDIMVSED 572
++ ++ T SSSS +S+ S P GVD + +D
Sbjct: 156 NNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 193
>gi|223941882 protein tyrosine phosphatase, non-receptor type 3
isoform 3 [Homo sapiens]
Length = 782
Score = 37.0 bits (84), Expect = 0.089
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 479 EISQQKNAAKDNSLDTEVAYLIH-EGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSS 537
EI + ++++ DN L E+ Y+ E +F + +G L P D+ +N SP+ E S
Sbjct: 256 EIRKPRHSSADN-LANEMTYITETEDVFYTY---KGSLAPQDSDSEVSQNRSPHQESLSE 311
Query: 538 DSVSEPECTTDSSSSKEHTSS---SAIPGGVDIMVSED 572
++ ++ T SSSS +S+ S P GVD + +D
Sbjct: 312 NNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 349
>gi|223941876 protein tyrosine phosphatase, non-receptor type 3
isoform 1 [Homo sapiens]
Length = 913
Score = 37.0 bits (84), Expect = 0.089
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 479 EISQQKNAAKDNSLDTEVAYLIH-EGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSS 537
EI + ++++ DN L E+ Y+ E +F + +G L P D+ +N SP+ E S
Sbjct: 387 EIRKPRHSSADN-LANEMTYITETEDVFYTY---KGSLAPQDSDSEVSQNRSPHQESLSE 442
Query: 538 DSVSEPECTTDSSSSKEHTSS---SAIPGGVDIMVSED 572
++ ++ T SSSS +S+ S P GVD + +D
Sbjct: 443 NNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 480
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 35.4 bits (80), Expect = 0.26
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 509 AFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIM 568
AF + TP S+ + + +S P S+D+ P TT S S+E T+S + PG D
Sbjct: 167 AFPDSTTTP----GLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTA 222
Query: 569 VS 570
+S
Sbjct: 223 LS 224
Score = 32.3 bits (72), Expect = 2.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 502 EGMFISDAFGEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTS 557
E + + G E T + TT S+++ + S P S D+ P TT S S+E T+
Sbjct: 462 ESTTVHSSPGSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTT 521
Query: 558 SSAIPG 563
S + PG
Sbjct: 522 SHSRPG 527
Score = 30.4 bits (67), Expect = 8.3
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
G E T + TT S+++ + +S P S + P TT S S+E T+S + PG
Sbjct: 105 GSMETTALPGSTTTPGLSEKSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTH 164
Query: 567 IMVSEDMKLT 576
D T
Sbjct: 165 TTAFPDSTTT 174
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 35.4 bits (80), Expect = 0.26
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 509 AFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIM 568
AF + TP S+ + + +S P S+D+ P TT S S+E T+S + PG D
Sbjct: 61 AFPDSTTTP----GLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTA 116
Query: 569 VS 570
+S
Sbjct: 117 LS 118
Score = 32.3 bits (72), Expect = 2.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 502 EGMFISDAFGEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTS 557
E + + G E T + TT S+++ + S P S D+ P TT S S+E T+
Sbjct: 356 ESTTVHSSPGSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTT 415
Query: 558 SSAIPG 563
S + PG
Sbjct: 416 SHSRPG 421
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 35.4 bits (80), Expect = 0.26
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 509 AFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIM 568
AF + TP S+ + + +S P S+D+ P TT S S+E T+S + PG D
Sbjct: 2091 AFPDSTTTP----GLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTA 2146
Query: 569 VS 570
+S
Sbjct: 2147 LS 2148
Score = 35.4 bits (80), Expect = 0.26
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 509 AFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIM 568
AF + TP S+ + + +S P S+D+ P TT S S+E T+S + PG D
Sbjct: 2565 AFPDSTTTP----GLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTA 2620
Query: 569 VS 570
+S
Sbjct: 2621 LS 2622
Score = 34.7 bits (78), Expect = 0.44
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+++ + +S P + +++ P+ TT S+E T+S +IPG D +S T S LG
Sbjct: 305 SEKSTTSHSRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPG-TTTPSSLG 361
Score = 34.3 bits (77), Expect = 0.58
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 509 AFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIM 568
AF + TP S+ + + +S P S+D+ P TT S SS+E T+S + G D
Sbjct: 3648 AFPDSTTTP----GLSRHSTTSHSSPGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTA 3703
Query: 569 VS 570
+S
Sbjct: 3704 LS 3705
Score = 32.3 bits (72), Expect = 2.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 509 AFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIM 568
AF + TP S+ + + +S P S+D+ P TT S S+E T+S + G D
Sbjct: 1008 AFPDSTTTP----GLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSSGSTDTA 1063
Query: 569 VS 570
+S
Sbjct: 1064 LS 1065
Score = 32.3 bits (72), Expect = 2.2
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGV 565
G E T + TT S+++ + S P S D+ P TT S S+E T+S + PG +
Sbjct: 4311 GSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPGSM 4369
Score = 32.0 bits (71), Expect = 2.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPG 563
G E T + TT S+++ + S P S D+ P TT S S+E T+S + PG
Sbjct: 1671 GSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPG 1727
Score = 32.0 bits (71), Expect = 2.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPG 563
G E T + TT S+++ + S P S D+ P TT S S+E T+S + PG
Sbjct: 3228 GSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPG 3284
Score = 31.6 bits (70), Expect = 3.7
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
G E T + TT S+R+ + +S P S + P TT S S+E T+S + PG
Sbjct: 946 GSMETTALPGSTTTPGLSERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSRSRPGSTH 1005
Query: 567 IMVSEDMKLT 576
D T
Sbjct: 1006 TTAFPDSTTT 1015
Score = 31.2 bits (69), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSED 572
SQ + + +S P S+D+ P TT SS E T+ + PG + + D
Sbjct: 1744 SQESTASHSSPGSTDTTLSPGSTTASSLGPESTTFHSSPGSTETTLLPD 1792
Score = 31.2 bits (69), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSED 572
SQ + + +S P S+D+ P TT SS E T+ + PG + + D
Sbjct: 4384 SQESTASHSSPGSTDTTLSPGSTTASSLGPESTTFHSSPGSTETTLLPD 4432
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+ + + +S P S+ + + P TT S+E T+S + PG D +S T S LG
Sbjct: 1716 SEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPG-STTASSLG 1772
Score = 30.8 bits (68), Expect = 6.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
S+ +++ +S+P S+ + + P+ TT S+ T+S + PG D
Sbjct: 2548 SEESSTSHSQPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTD 2590
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+ + + +S P S+ + + P TT S+E T+S + PG D +S T S LG
Sbjct: 3273 SEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLSPG-STTASSLG 3329
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+ + + +S P S + + P TT S+E T+S + PG D +S T S LG
Sbjct: 4356 SEESTTSHSRPGSMHTTAFPSSTTMPGVSQESTASHSSPGSTDTTLSPG-STTASSLG 4412
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 512 EGELTPIAVDTTS--QRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
E L+P ++ T+S Q +P+S+P S+ S P TT S+E T+ + PG +
Sbjct: 4948 ETTLSPGSITTSSFAQEFTTPHSQPGSALSTVSPASTTVPGLSEESTTFYSSPGSTE 5004
Score = 30.4 bits (67), Expect = 8.3
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
G E T + TT S+++ + +S P S + P TT S S+E T+S + PG
Sbjct: 2029 GSMETTALPGSTTTPGLSEKSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTH 2088
Query: 567 IMVSEDMKLT 576
D T
Sbjct: 2089 TTAFPDSTTT 2098
Score = 30.4 bits (67), Expect = 8.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSED 572
SQ + + +S P S+D+ P TT SS E T+ + PG + + D
Sbjct: 3301 SQESTASHSSPGSTDTTLSPGSTTASSLGPESTTFHSGPGSTETTLLPD 3349
Score = 30.4 bits (67), Expect = 8.3
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
G E T + TT S+++ + +S P S + P TT S S+E T+S + PG
Sbjct: 3586 GSMETTALPGSTTTPGLSEKSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTH 3645
Query: 567 IMVSEDMKLT 576
D T
Sbjct: 3646 TTAFPDSTTT 3655
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 34.7 bits (78), Expect = 0.44
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+++ + +S P + +++ P+ TT S+E T+S +IPG D +S T S LG
Sbjct: 226 SEKSTTSHSRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPG-TTTPSSLG 282
Score = 32.0 bits (71), Expect = 2.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPG 563
G E T + TT S+++ + S P S D+ P TT S S+E T+S + PG
Sbjct: 978 GSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPG 1034
Score = 31.6 bits (70), Expect = 3.7
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
G E T + TT S+R+ + +S P S + P TT S S+E T+S + PG
Sbjct: 867 GSMETTALPGSTTTPGLSERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPGSTH 926
Query: 567 IMVSEDMKLT 576
D T
Sbjct: 927 TTAFPDSTTT 936
Score = 31.2 bits (69), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSED 572
SQ + + +S P S+D+ P TT SS E T+ + PG + + D
Sbjct: 1051 SQESTASHSSPGSTDTTLSPRSTTASSLGPESTTFHSGPGSTETTLLPD 1099
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+ + + +S P S+ + + P TT S+E T+S + PG D +S T S LG
Sbjct: 1023 SEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLS-PRSTTASSLG 1079
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 512 EGELTPIAVDTTS--QRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVD 566
E L+P ++ T+S Q +P+S+P S+ S P TT S+E T+ + PG +
Sbjct: 1422 ETTLSPGSITTSSFAQEFTTPHSQPGSALSTVSPASTTVPGLSEESTTFYSSPGSTE 1478
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 34.7 bits (78), Expect = 0.44
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELG 581
S+++ + +S P + +++ P+ TT S+E T+S +IPG D +S T S LG
Sbjct: 161 SEKSTTSHSRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPG-TTTPSSLG 217
Score = 30.8 bits (68), Expect = 6.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 511 GEGELTPIAVDTT----SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPG 563
G E T + TT S+R+ + +S P S + P TT S S+E T+S + PG
Sbjct: 802 GSMETTALPGSTTTPGLSERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHSRPG 858
Score = 30.4 bits (67), Expect = 8.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 524 SQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSAIPGGVDIMVSED 572
SQ + + +S P +D+ P TT SS E+T+ + PG + + D
Sbjct: 545 SQESTASHSSPGPTDTTLSPGSTTASSLGPEYTTFHSSPGSTETTLLPD 593
>gi|206597470 neural precursor cell expressed, developmentally
down-regulated 1 isoform c [Homo sapiens]
Length = 571
Score = 34.3 bits (77), Expect = 0.58
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 25/204 (12%)
Query: 436 FDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL-----DKNQRTRELEEISQQKNAAKDN 490
FD L + S F V ++ +++HS L+V + R+L S++ K
Sbjct: 344 FDFLPQLNSVFPPRKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQE 403
Query: 491 SLDT--EVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD 548
S D+ ++A L+ G G +P + T + + + EP +
Sbjct: 404 SKDSFKQLAKLVTSGA----ESGNLNTSPSSNQTRNSEKFEKPENEIEAQLICEPPI--N 457
Query: 549 SSSSKEHTSSSAIPGGVDIMVSEDMK-----------LTDSELGKLANNIQELLYSASDI 597
SS+ +S++ GV +SE + LT ++ + N IQE L +
Sbjct: 458 GSSTPNPKIASSVTAGVASSLSEKIADSIGNNRQNAPLTSIQIRFIQNMIQETLDDFREA 517
Query: 598 CHDRAVKFLMSRAKDGFLEKLNSM 621
CH V + K F +LN M
Sbjct: 518 CHRDIVNLQVEMIKQ-FHMQLNEM 540
>gi|206597468 neural precursor cell expressed, developmentally
down-regulated 1 isoform b [Homo sapiens]
Length = 660
Score = 34.3 bits (77), Expect = 0.58
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 25/204 (12%)
Query: 436 FDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL-----DKNQRTRELEEISQQKNAAKDN 490
FD L + S F V ++ +++HS L+V + R+L S++ K
Sbjct: 433 FDFLPQLNSVFPPRKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQE 492
Query: 491 SLDT--EVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD 548
S D+ ++A L+ G G +P + T + + + EP +
Sbjct: 493 SKDSFKQLAKLVTSGA----ESGNLNTSPSSNQTRNSEKFEKPENEIEAQLICEPPI--N 546
Query: 549 SSSSKEHTSSSAIPGGVDIMVSEDMK-----------LTDSELGKLANNIQELLYSASDI 597
SS+ +S++ GV +SE + LT ++ + N IQE L +
Sbjct: 547 GSSTPNPKIASSVTAGVASSLSEKIADSIGNNRQNAPLTSIQIRFIQNMIQETLDDFREA 606
Query: 598 CHDRAVKFLMSRAKDGFLEKLNSM 621
CH V + K F +LN M
Sbjct: 607 CHRDIVNLQVEMIKQ-FHMQLNEM 629
>gi|23097254 neural precursor cell expressed, developmentally
down-regulated 1 isoform b [Homo sapiens]
Length = 660
Score = 34.3 bits (77), Expect = 0.58
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 25/204 (12%)
Query: 436 FDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL-----DKNQRTRELEEISQQKNAAKDN 490
FD L + S F V ++ +++HS L+V + R+L S++ K
Sbjct: 433 FDFLPQLNSVFPPRKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQE 492
Query: 491 SLDT--EVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD 548
S D+ ++A L+ G G +P + T + + + EP +
Sbjct: 493 SKDSFKQLAKLVTSGA----ESGNLNTSPSSNQTRNSEKFEKPENEIEAQLICEPPI--N 546
Query: 549 SSSSKEHTSSSAIPGGVDIMVSEDMK-----------LTDSELGKLANNIQELLYSASDI 597
SS+ +S++ GV +SE + LT ++ + N IQE L +
Sbjct: 547 GSSTPNPKIASSVTAGVASSLSEKIADSIGNNRQNAPLTSIQIRFIQNMIQETLDDFREA 606
Query: 598 CHDRAVKFLMSRAKDGFLEKLNSM 621
CH V + K F +LN M
Sbjct: 607 CHRDIVNLQVEMIKQ-FHMQLNEM 629
>gi|206597465 neural precursor cell expressed, developmentally
down-regulated 1 isoform a [Homo sapiens]
Length = 667
Score = 34.3 bits (77), Expect = 0.58
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 25/204 (12%)
Query: 436 FDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVL-----DKNQRTRELEEISQQKNAAKDN 490
FD L + S F V ++ +++HS L+V + R+L S++ K
Sbjct: 440 FDFLPQLNSVFPPRKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQE 499
Query: 491 SLDT--EVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD 548
S D+ ++A L+ G G +P + T + + + EP +
Sbjct: 500 SKDSFKQLAKLVTSGA----ESGNLNTSPSSNQTRNSEKFEKPENEIEAQLICEPPI--N 553
Query: 549 SSSSKEHTSSSAIPGGVDIMVSEDMK-----------LTDSELGKLANNIQELLYSASDI 597
SS+ +S++ GV +SE + LT ++ + N IQE L +
Sbjct: 554 GSSTPNPKIASSVTAGVASSLSEKIADSIGNNRQNAPLTSIQIRFIQNMIQETLDDFREA 613
Query: 598 CHDRAVKFLMSRAKDGFLEKLNSM 621
CH V + K F +LN M
Sbjct: 614 CHRDIVNLQVEMIKQ-FHMQLNEM 636
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 34.3 bits (77), Expect = 0.58
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 475 RELEEISQ--QKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNS 532
R+ +++SQ + +A + + T ++ M++S + E+T I TS ++
Sbjct: 50 RQCQQLSQHVRTGSAANTATGTTSTNVVEPRMYLSCSTNP-EMTSIESSVTSDTPGVSST 108
Query: 533 EPCSSDSVSEPECTTDSS----SSKEHTSSSAIPGGVDIMVS 570
++S + E T+DS+ SS E TSS P G D+ +S
Sbjct: 109 RMTPTESRTTSESTSDSTTLFPSSTEDTSSPTTPEGTDVPMS 150
>gi|54124343 hypothetical protein LOC387680 [Homo sapiens]
Length = 1341
Score = 34.3 bits (77), Expect = 0.58
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 13/185 (7%)
Query: 520 VDTTSQRNASPNSEPCSSDSV-SEPECTTD---SSSSKEHTSSSAIPGGVDIMVS--EDM 573
V +S +N P+SE + + S+ E + D S S+ + +S +PG + +VS +D
Sbjct: 517 VTLSSSKNLKPSSETKTQKGLFSDEEDSEDLFSSQSASKLKGASLLPGKLPTLVSLFDDE 576
Query: 574 KLTDSELGKLANNIQELLYSASDICHDRAVKFLMSRAKDGFLEKLNSMEFITLSRLMETF 633
D+ G A Q L A ++A +S+ K L + E +T
Sbjct: 577 DEEDNLFGGTAAKKQTLCLQAQR--EEKAKASELSKKKASALLFSSDEEDQWNIPASQTH 634
Query: 634 ILDTEQICGRKSTSLLGALQSQ---AIKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQ 690
+ + G S G LQSQ A+K + F E+ + L + + + K V F+
Sbjct: 635 LASDSRSKGEPRDS--GTLQSQEAKAVKKTSLFEEDEEDDLFAIAKDSQKKTQRVSLLFE 692
Query: 691 DLVDS 695
D VDS
Sbjct: 693 DDVDS 697
>gi|30794488 kinesin family member 27 [Homo sapiens]
Length = 1401
Score = 33.5 bits (75), Expect = 0.98
Identities = 77/394 (19%), Positives = 165/394 (41%), Gaps = 31/394 (7%)
Query: 331 LCELEKLIDKMMIAEFSTYSHSDLNRPLEDDCQVLE------EERLISLVFGLLKQRKLN 384
+C L +L D + S + DL + Q L ER+++ +++ +N
Sbjct: 673 VCSLVELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTIN 732
Query: 385 FL--EIYGEKMVIT---AKNIIKQCVINKVSQTEEIDTDVVVKLADQMRMLNFPQWFDLL 439
E ++++ T AK++ KQ + KV++ E V+L + + L + DL
Sbjct: 733 IKMKEDLIKELIKTGNDAKSVSKQYSL-KVTKLEHDAEQAKVELIETQKQLQELENKDL- 790
Query: 440 KDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEISQQKNAAKDNSLDTEVAYL 499
D+ K + + + ++ V + K Q +++L +S Q N + N L+ V ++
Sbjct: 791 SDVAMKVKL-QKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQ-NEKRANELEQSVDHM 848
Query: 500 IHEGMFISDAFGEGELTPIAVDTTSQRNASPNSE---PCSSDSVSEPECTT-DSSSSKEH 555
++ + + E +D +R+ E + +P+ D+ + K
Sbjct: 849 KYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRR 908
Query: 556 TSSSAIPGGVDIM--VSEDMKLTDSELGKLANNIQELLYSASDICHDRAVKFLMSRAKDG 613
S G +D + + E K D E+ K+ N QEL +D+ A+ K+
Sbjct: 909 KGSF---GSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAI----VSKKEA 961
Query: 614 FLEKLNSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKLSL 673
L++ + +E +L + L+T+ + +LL S+ + E KTK+S
Sbjct: 962 LLQEKSHLE---NKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISE 1018
Query: 674 LLDNERWKQADVPAEFQDLVDSLSDGKIALPEKK 707
++ + ++ + ++ + L +G++ PE++
Sbjct: 1019 QVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEE 1052
>gi|48762942 huntingtin interacting protein-1-related [Homo sapiens]
Length = 1068
Score = 33.1 bits (74), Expect = 1.3
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 612 DGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKL 671
+G ++ ++ +L R +E + E+I ++ + L+SQ E+RK K
Sbjct: 345 NGSVKDDRDLQIESLKREVEMLRSELEKI-KLEAQRYIAQLKSQVNALEGELEEQRKQKQ 403
Query: 672 SLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKSGATEER 714
L+DNE+ + L S G E+K+ ATE R
Sbjct: 404 KALVDNEQLRHELAQLRAAQLEGERSQGLREEAERKASATEAR 446
>gi|73858570 serpin peptidase inhibitor, clade G, member 1 precursor
[Homo sapiens]
Length = 500
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 516 TPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD--SSSSKEHTSSSAIPGGVDIMVSEDM 573
T I +TT + P +EP + ++ + TT + S + T+ S PG V + +
Sbjct: 76 TKITANTTDEPTTQPTTEPTTQPTIQPTQPTTQLPTDSPTQPTTGSFCPGPVTLCSDLES 135
Query: 574 KLTDSELGKLANNIQELLYSA 594
T++ LG + LY A
Sbjct: 136 HSTEAVLGDALVDFSLKLYHA 156
>gi|73858568 serpin peptidase inhibitor, clade G, member 1 precursor
[Homo sapiens]
Length = 500
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 516 TPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD--SSSSKEHTSSSAIPGGVDIMVSEDM 573
T I +TT + P +EP + ++ + TT + S + T+ S PG V + +
Sbjct: 76 TKITANTTDEPTTQPTTEPTTQPTIQPTQPTTQLPTDSPTQPTTGSFCPGPVTLCSDLES 135
Query: 574 KLTDSELGKLANNIQELLYSA 594
T++ LG + LY A
Sbjct: 136 HSTEAVLGDALVDFSLKLYHA 156
>gi|239750456 PREDICTED: similar to KIAA0655 protein [Homo sapiens]
Length = 1048
Score = 33.1 bits (74), Expect = 1.3
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 612 DGFLEKLNSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKL 671
+G ++ ++ +L R +E + E+I ++ + L+SQ E+RK K
Sbjct: 325 NGSVKDDRDLQIESLKREVEMLRSELEKI-KLEAQRYIAQLKSQVNALEGELEEQRKQKQ 383
Query: 672 SLLLDNERWKQADVPAEFQDLVDSLSDGKIALPEKKSGATEER 714
L+DNE+ + L S G E+K+ ATE R
Sbjct: 384 KALVDNEQLRHELAQLRAAQLEGERSQGLREEAERKASATEAR 426
>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
Length = 1253
Score = 33.1 bits (74), Expect = 1.3
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 13/185 (7%)
Query: 520 VDTTSQRNASPNSEPCSSDSV-SEPECTTD---SSSSKEHTSSSAIPGGVDIMVS--EDM 573
V +S +N P+SE + + S+ E + D S S+ + +S +PG + VS +D
Sbjct: 429 VTLSSSKNLKPSSETKTQKGLFSDEEDSEDLFSSQSASKLKGASLLPGKLPTSVSLFDDE 488
Query: 574 KLTDSELGKLANNIQELLYSASDICHDRAVKFLMSRAKDGFLEKLNSMEFITLSRLMETF 633
D+ G A Q L A ++A +S+ K L + E +T
Sbjct: 489 DEEDNLFGGTAAKKQTLCLQAQR--EEKAKASELSKKKASALLFSSDEEDQWNIPASQTH 546
Query: 634 ILDTEQICGRKSTSLLGALQSQ---AIKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQ 690
+ + G S G LQSQ A+K + F E+ + L + + + K V F+
Sbjct: 547 LASDSRSKGEPRDS--GTLQSQEAKAVKKTSLFEEDEEDDLFAIAKDSQKKTQRVSLLFE 604
Query: 691 DLVDS 695
D VDS
Sbjct: 605 DDVDS 609
>gi|47132622 5'-methylthioadenosine phosphorylase [Homo sapiens]
Length = 283
Score = 32.7 bits (73), Expect = 1.7
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 33 VPSLPDVCPKEPTV---TDQHRWTVYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDT 89
+P CPK V T + HSK + + PR + R F +TWG D ++
Sbjct: 138 IPMAEPFCPKTREVLIETAKKLGLRCHSKGTM-VTIEGPRFSSRAESFMFRTWGADVINM 196
Query: 90 EVIPSFYL 97
+P L
Sbjct: 197 TTVPEVVL 204
>gi|237858621 polyamine modulated factor 1 binding protein 1 isoform
b [Homo sapiens]
Length = 882
Score = 32.7 bits (73), Expect = 1.7
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 224 TSQHELQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMAT 283
TSQ +QD ++ + + L AQ+DK + + H L+ +T+ + Y+ L +
Sbjct: 540 TSQQVIQDLNKEIALQKESLMSLQAQLDKAL-QKEKHYLQTTITK----EAYDALSRKSA 594
Query: 284 VHQ---TQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQL-CELEKLID 339
Q TQ ++ TSE + TQE Q + I ++ +L EL KL
Sbjct: 595 ACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRG 654
Query: 340 KMMIAEFSTYSHSDLNRPLED-DCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAK 398
+E ++ ++ LE+ CQVL+ ++ +L ++ E + E+M +
Sbjct: 655 FHQESELEVHA---FDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLRE-FQEEMAALKE 710
Query: 399 NIIKQ----CVINKVSQTEEIDTDVVVKLADQMRMLNFPQW 435
N+++ C + + S + DT + + DQ+ M N QW
Sbjct: 711 NLLEDDKEPCCLPQWSVPK--DTCRLYRGNDQI-MTNLEQW 748
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 32.7 bits (73), Expect = 1.7
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 224 TSQHELQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMAT 283
T+ ++L D LRK + LR K+A +DK + + + + V + L A
Sbjct: 22 TNNYQLSDELRKNGVELTSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAK 81
Query: 284 VHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQ 319
+H + + L S + + + E L+QE Q
Sbjct: 82 LHSQEEDFR--LQNSTLMAEFSKLCSQMEQLEQENQ 115
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,708,570
Number of Sequences: 37866
Number of extensions: 1469000
Number of successful extensions: 5127
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4897
Number of HSP's gapped (non-prelim): 269
length of query: 965
length of database: 18,247,518
effective HSP length: 112
effective length of query: 853
effective length of database: 14,006,526
effective search space: 11947566678
effective search space used: 11947566678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.