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Search of human proteins with 52353320
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52353320 FSHD region gene 2 [Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo ... 567 e-162
gi|52353320 FSHD region gene 2 [Homo sapiens] 567 e-162
gi|124487405 FSHD region gene 2 family, member B [Homo sapiens] 557 e-159
gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens] 536 e-153
gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens] 536 e-153
gi|185136049 FSHD region gene 2 family, member C [Homo sapiens] 530 e-151
gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo ... 270 1e-72
gi|239753769 PREDICTED: similar to FSHD region gene 2 family, me... 119 3e-27
gi|239748331 PREDICTED: similar to FSHD region gene 2 family, me... 119 3e-27
gi|239742234 PREDICTED: similar to FSHD region gene 2 family, me... 119 3e-27
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 41 0.001
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 40 0.002
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 40 0.002
gi|151301228 formin binding protein 3 [Homo sapiens] 40 0.003
gi|7705971 leucine zipper protein 4 [Homo sapiens] 38 0.009
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 37 0.015
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 37 0.019
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 37 0.019
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 37 0.025
gi|117190342 PHD finger protein 2 [Homo sapiens] 37 0.025
gi|221316599 chromogranin B precursor [Homo sapiens] 37 0.025
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 35 0.055
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 35 0.055
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 35 0.055
gi|58533172 zinc finger, matrin type 1 isoform 3 [Homo sapiens] 35 0.055
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 35 0.072
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 35 0.072
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 35 0.072
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 35 0.072
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 35 0.094
>gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo
sapiens]
Length = 278
Score = 567 bits (1462), Expect = e-162
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL
Sbjct: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
Query: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR
Sbjct: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
Query: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW
Sbjct: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
Query: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL
Sbjct: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|52353320 FSHD region gene 2 [Homo sapiens]
Length = 278
Score = 567 bits (1462), Expect = e-162
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL
Sbjct: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
Query: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR
Sbjct: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
Query: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW
Sbjct: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
Query: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL
Sbjct: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
Length = 278
Score = 557 bits (1436), Expect = e-159
Identities = 274/278 (98%), Positives = 274/278 (98%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL
Sbjct: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
Query: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
SLNKKSRSST VHNSEIQETCDAHHRG SRACTG SKRHRSRALGVQTPSIRKSLVTSVR
Sbjct: 121 SLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSVR 180
Query: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW
Sbjct: 181 AMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAESW 240
Query: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL
Sbjct: 241 LVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 536 bits (1381), Expect = e-153
Identities = 265/279 (94%), Positives = 271/279 (97%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRK+SSKDSCQD AGNCPE+ECS
Sbjct: 61 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKISSKDSCQDRAGNCPEEECS 120
Query: 120 LSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSV 179
L+LNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SK+HRS+ALGVQTPS+RKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQHRSQALGVQTPSLRKSLVTSV 180
Query: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
WLVPATLPGPGESALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 241 WLVPATLPGPGESALDREAHPFPGQEITEPVSGSDEAKL 279
>gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 536 bits (1381), Expect = e-153
Identities = 265/279 (94%), Positives = 271/279 (97%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRK+SSKDSCQD AGNCPE+ECS
Sbjct: 61 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKISSKDSCQDRAGNCPEEECS 120
Query: 120 LSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSV 179
L+LNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SK+HRS+ALGVQTPS+RKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQHRSQALGVQTPSLRKSLVTSV 180
Query: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
WLVPATLPGPGESALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 241 WLVPATLPGPGESALDREAHPFPGQEITEPVSGSDEAKL 279
>gi|185136049 FSHD region gene 2 family, member C [Homo sapiens]
Length = 282
Score = 530 bits (1364), Expect = e-151
Identities = 261/279 (93%), Positives = 269/279 (96%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRK+SSKD CQD AGNCPE+EC+
Sbjct: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
Query: 120 LSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSV 179
L+LNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SKRHRSRAL VQTPS+RKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
Query: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
WLVPATLPGPG+SALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKL 279
>gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo
sapiens]
Length = 381
Score = 270 bits (689), Expect = 1e-72
Identities = 142/203 (69%), Positives = 146/203 (71%), Gaps = 51/203 (25%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQG 60
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQ- 59
Query: 61 SEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSL 120
GNCPE+EC+L
Sbjct: 60 --------------------------------------------------GNCPEEECNL 69
Query: 121 SLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVR 180
+LNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SKRHRSRAL VQTPS+RKSLVTSVR
Sbjct: 70 TLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSVR 129
Query: 181 AMSEAVYQDLAQVWAQQIHSPLT 203
AMSEAVYQDLAQVWAQQIHSPLT
Sbjct: 130 AMSEAVYQDLAQVWAQQIHSPLT 152
>gi|239753769 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 119 bits (298), Expect = 3e-27
Identities = 59/66 (89%), Positives = 59/66 (89%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNED LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 60 GSEPNP 65
G EPNP
Sbjct: 61 GLEPNP 66
>gi|239748331 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 119 bits (298), Expect = 3e-27
Identities = 59/66 (89%), Positives = 59/66 (89%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNED LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 60 GSEPNP 65
G EPNP
Sbjct: 61 GLEPNP 66
>gi|239742234 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 119 bits (298), Expect = 3e-27
Identities = 59/66 (89%), Positives = 59/66 (89%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
MGKGNED LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 60 GSEPNP 65
G EPNP
Sbjct: 61 GLEPNP 66
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 24/164 (14%)
Query: 34 SDEKKPFKEKGKTAFSHSSEKHIQRQ-----------GSEPNPNKENSEETKLKAGNSTA 82
S E + + K K++ H SE+H ++ SE ++ +E K G S +
Sbjct: 67 SKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHS 126
Query: 83 GSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCD 142
S +R R+RK S S + +E KKSRS + I
Sbjct: 127 RSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRE-----RKKSRSRSRERKRRI----- 176
Query: 143 AHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSVRAMSEAV 186
R SR+ + H R RSR+ RK + R S ++
Sbjct: 177 ---RSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSL 217
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 25 QQISFTEKGSDEKKPFKEKGKTAFSHS-SEKHIQRQGSEPNPNKENSEETKLKAGNSTAG 83
++++ +E G D K + K SHS S +R S K++ ++ + + +
Sbjct: 100 ERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRS 159
Query: 84 SEPESSSYRENCRKRKMSSK 103
E + S R RKR++ S+
Sbjct: 160 RERKKSRSRSRERKRRIRSR 179
Score = 30.0 bits (66), Expect = 2.3
Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 25/152 (16%)
Query: 31 EKGSDEKKPFKEKGKTAFS-HSSEKHIQRQGSEPNPNKENSE------------------ 71
EK S ++ KE+ + + S +S+ H R S K S+
Sbjct: 14 EKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRH 73
Query: 72 ETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTA 131
E+K K+ E + + + +++S ++ +D K + +SRS
Sbjct: 74 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 133
Query: 132 VHNSEIQETCDAHHRGHSRACTGHSKRHRSRA 163
H S +E R SR+ + K+ RSR+
Sbjct: 134 RHRSRSRE------RKKSRSRSRERKKSRSRS 159
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 20 DQPPFQQISFTE---KGSDEKKPFKEKGKTAFSHSSEKHIQRQGS-EPNPNKENSEETKL 75
+Q PF+ + ++ K ++ KK EKG T S+K + GS NP + E K
Sbjct: 96 EQTPFRHLYTSKTHLKKAEYKKSKDEKGGTPLKKDSKK---KGGSYATNPESKQIVEEKT 152
Query: 76 KAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNS 135
K N + +SS E +K K SS+ + + K CS K S++S N+
Sbjct: 153 KRQNEADKTPLKSSHENEQSKKSKSSSETNPESQNSKTVSKNCSQKDKKDSKNSKKT-NT 211
Query: 136 EIQET 140
E T
Sbjct: 212 EFLHT 216
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 31 EKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPN-PNKENSEETKLKAGNSTAGSEPESS 89
E K K + HSS+K +R S N ++ +E K G S + S
Sbjct: 15 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 74
Query: 90 SYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHHRGHS 149
+R R+RK S S + +E KKSRS + I R S
Sbjct: 75 RHRSRSRERKKSRSRSRERKKSRSRSRE-----RKKSRSRSRERKRRI--------RSRS 121
Query: 150 RACTGHSKRHRSRALGVQTPSIRKSLVTSVRAMSEAV 186
R+ + H R RSR+ RK + R S ++
Sbjct: 122 RSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSL 158
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 25 QQISFTEKGSDEKKPFKEKGKTAFSHS-SEKHIQRQGSEPNPNKENSEETKLKAGNSTAG 83
++++ +E G D K + K SHS S +R S K++ ++ + + +
Sbjct: 41 ERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRS 100
Query: 84 SEPESSSYRENCRKRKMSSK 103
E + S R RKR++ S+
Sbjct: 101 RERKKSRSRSRERKRRIRSR 120
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 21 QPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNS 80
+P F+ I+ S+ K+ FK+ F H E Q S+ + + S++ K S
Sbjct: 750 EPAFEDITLE---SERKRIFKD-----FMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRS 801
Query: 81 TAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQET 140
+GS+ + ++++ S+ + + ++ E+ S K +S H S+ E+
Sbjct: 802 RSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPES 861
Query: 141 CDAHHRGHSRACTGHSKRHRSR 162
DA + S++ R+R
Sbjct: 862 -DAEREKDKKEKDRESEKDRTR 882
>gi|7705971 leucine zipper protein 4 [Homo sapiens]
Length = 313
Score = 38.1 bits (87), Expect = 0.009
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 20 DQPPFQQISFTEKGSD--EKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKA 77
D+ P Q+ S + G +P E+ K + ++ ++ + SE N ++ K
Sbjct: 89 DKKPSQKPSGFKSGQHPLNGQPLIEQEKCSDNYEAQAEKNQGQSEGNQHQSEGNPDK--- 145
Query: 78 GNSTAGSEPESSSYRENCR---KRKMSSKDSCQ-DTAGNCPEKECSLSLNKKS--RSSTA 131
+ + +PE + + E R +R +S D Q + P+ E S K+S +S +
Sbjct: 146 -SEESQGQPEENHHSERSRNHLERSLSQSDRSQGQLKRHHPQYERSHGQYKRSHGQSERS 204
Query: 132 VHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPS 170
+SE GHS GHSKR RS+ V T S
Sbjct: 205 HGHSERSHGHSERSHGHSERSHGHSKRSRSQGDLVDTQS 243
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 37.4 bits (85), Expect = 0.015
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 30 TEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKA----GNSTAGSE 85
TE EKK EK + + + +G + N++++ ++ K ++AG +
Sbjct: 734 TEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDNRASESKKPKTEDKNSAGHK 793
Query: 86 PESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHH 145
P SS RE+ ++ KD AG P K+ + R+ + + + +
Sbjct: 794 P--SSNRESSKQSAAKEKDLLPSPAGPVPSKDPKTEHGSRKRTISQSSSLKSSSNSNKET 851
Query: 146 RGHSRACTGHSKRHRS 161
G S+ + SK+ ++
Sbjct: 852 SGSSKNSSSTSKQKKT 867
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 50 HSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDT 109
H S K Q S + +++ET + NS++ S+ + + + + +++ K+ +
Sbjct: 828 HGSRKRTISQSSSLKSSSNSNKETSGSSKNSSSTSKQKKTEGKTSSSSKEV--KEKAPSS 885
Query: 110 AGNCPEKECSLSLNKKSRS 128
+ NCP +L +K R+
Sbjct: 886 SSNCPPSAPTLDSSKPRRT 904
Score = 29.3 bits (64), Expect = 4.0
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 28 SFTEKGSDEKKPFKEKGKTAFSHSSE------KHIQRQ--GSEPNPNKENSEETKLKAGN 79
S T G K K+ K + S S+ K + R GS P+ NSE +
Sbjct: 368 SKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSRDD 427
Query: 80 STAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKE 117
S++ S ESSS ++ + S ++ + + PE E
Sbjct: 428 SSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPE 465
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 37.0 bits (84), Expect = 0.019
Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 3/158 (1%)
Query: 5 NEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKG-KTAFSHSSEKHIQRQGSEP 63
+ED DL + D+ + S+E+ K+K + + S S H +
Sbjct: 159 DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS 218
Query: 64 NPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLN 123
+P+ S +S++ S SSS RE R R S+ S + G+ ++ S S +
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS 277
Query: 124 KKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRS 161
S + + + +R+ +RHRS
Sbjct: 278 SSSPERNRKRSRSRSSSSGDRKKRRTRS-RSPERRHRS 314
Score = 34.3 bits (77), Expect = 0.12
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 37 KKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCR 96
+K K +GK S K ++ + SE E+ + +K K + + S Y +
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 97 KRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHS 156
+ + S+K K+ + KSRSS + +S + R SR+ + S
Sbjct: 189 EEEDSNK------------KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
Query: 157 KRHRSRA 163
+ RSR+
Sbjct: 237 SQSRSRS 243
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 37.0 bits (84), Expect = 0.019
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 5 NEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKG-KTAFSHSSEKHIQRQGSEP 63
+ED DL + D+ + S+E+ K+K + + S S H +
Sbjct: 159 DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS 218
Query: 64 NPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLN 123
+P+ S +S++ S SSS RE R R S+ S + G+ ++ S S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRGSSSPRKRSYS-- 275
Query: 124 KKSRSSTAVHNSEIQETCDAHHRGHSR-ACTGHSKRHRSRA 163
S SS+ N + R SR + +G K+ R+R+
Sbjct: 276 --SSSSSPERNRK---------RSRSRSSSSGDRKKRRTRS 305
Score = 31.2 bits (69), Expect = 1.0
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 37 KKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCR 96
+K K +GK S K ++ + SE E+ + +K K + + S Y +
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 97 KRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHS 156
+ + S+K K+ + KSRSS H R SR+ + S
Sbjct: 189 EEEDSNK------------KKSNRRSRSKSRSS--------------HSRSSSRSSSPSS 222
Query: 157 KRHRSRALGVQTPSIRKSLVTSVRAMSEA 185
R RSR+ + S + +S R S +
Sbjct: 223 SRSRSRSRSRSSSSSQSRSRSSSRERSRS 251
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 36.6 bits (83), Expect = 0.025
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 2 GKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGS 61
G NEDS SS Q S S E G + K+ K K SE +
Sbjct: 710 GDSNEDSSEDSSSEQDSE--------SGRESGLENKRTAKRNSKAKGKSDSEDGEKENEK 761
Query: 62 EPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQD 108
+ N E + ++ +S + SE E S E+ R K K + QD
Sbjct: 762 SKTSDSSNDESSSIEDSSSDSESESEPESESESRRVTKEKEKKTKQD 808
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 36.6 bits (83), Expect = 0.025
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 6 EDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNP 65
+DSD S++ D P F+ S KGSD+ P+ + S + R+G+
Sbjct: 871 KDSDYVYPSLESDEDNPIFKSRSKKRKGSDD-APYSPTARVGPSVPRQDRPVREGT---- 925
Query: 66 NKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKK 125
+ S ET L A + + E S ++ KRK++ + P S+S
Sbjct: 926 -RVASIETGLAAAAAKLSQQEEQKSKKKKSAKRKLTPNTT-------SPSTSTSISAGTT 977
Query: 126 SRSSTAVHNSEIQET 140
S S+T + T
Sbjct: 978 STSTTPASTTPASTT 992
>gi|221316599 chromogranin B precursor [Homo sapiens]
Length = 677
Score = 36.6 bits (83), Expect = 0.025
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 31 EKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNP-NKENSEETKLKAGNSTAGSEPESS 89
E +E+ +KG+ S EKH++ G N E + + +K A SE ++
Sbjct: 163 EDEEEEEGENYQKGERGEDSSEEKHLEEPGETQNAFLNERKQASAIKKEELVARSETHAA 222
Query: 90 SY-RENCRKRKMSSKDSCQDTAG--NCP-EKECSLSLNKKSRSSTAVHNSEI--QETCDA 143
+ +E R+ SS++S ++T N P E + ++S SE+ + T
Sbjct: 223 GHSQEKTHSREKSSQESGEETGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPR 282
Query: 144 HHRGHSR 150
HH G SR
Sbjct: 283 HHHGRSR 289
Score = 29.3 bits (64), Expect = 4.0
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 49 SHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKM------SS 102
+HS EK Q G E + + +E+K + + E E + E ++R S
Sbjct: 229 THSREKSSQESGEETGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPRHHHGRS 288
Query: 103 KDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHHRGHSRA 151
+ G+ P +E + S+ ++ + + E D HH H RA
Sbjct: 289 RPDRSSQGGSLPSEEKGHPQEESEESNVSM--ASLGEKRD-HHSTHYRA 334
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 35.4 bits (80), Expect = 0.055
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 35 DEKKPFKEKGKTAFSHSSE-KHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRE 93
D+K+ K++ K + S S E KH R S N K + +K K S + +E
Sbjct: 414 DDKRDSKKEKKHSRSRSRERKHRSRSRSR-NAGKRSRSRSKEK-------SSKHKNESKE 465
Query: 94 NCRKRKMSSKDSCQDTAGNCPEKECSLS---LNKKSRSSTAVH---NSEIQETCDAHHRG 147
KR S D+ ++E S S K+SRS H +S+ ++ D H R
Sbjct: 466 KSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRR 525
Query: 148 HSRACTGHS--KRHRSR 162
S++ S K+H+++
Sbjct: 526 RSQSIEQESQEKQHKNK 542
Score = 28.1 bits (61), Expect = 8.8
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 41 KEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKM 100
+EK + S++ R E +KE+ ++ + + + E + S R RK +
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRS 437
Query: 101 SSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHR 160
S+ + N ++ S S K S+ H +E +E + R S+ T ++ +
Sbjct: 438 RSR------SRNAGKRSRSRSKEKSSK-----HKNESKEKSNKRSRSGSQGRTDSVEKSK 486
Query: 161 SRALGVQTPSIRKS 174
R +PS KS
Sbjct: 487 KRE---HSPSKEKS 497
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 35.4 bits (80), Expect = 0.055
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 30 TEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSE--ETKLKAGNSTAGSEPE 87
+ KG+ E + KG+ A + S P P K + + ++ KA +S+ GS
Sbjct: 1028 SSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRH 1087
Query: 88 SSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAHHRG 147
SS + +K SS S + P+K+ S S + SST+ + T G
Sbjct: 1088 SSP--APAQPKKESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPG 1145
Query: 148 HSRACTGHSKRHRSR 162
SR R SR
Sbjct: 1146 KSRTSDHSLSREGSR 1160
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 35.4 bits (80), Expect = 0.055
Identities = 51/172 (29%), Positives = 67/172 (38%), Gaps = 30/172 (17%)
Query: 28 SFTEKGSDEKKPFKEKG---KTAF----SHSSEKHIQRQGSEPNPNKENSEETKLKAGNS 80
SF ++ D K K +G KT F S E H R+ + P E+ KL
Sbjct: 391 SFQDELEDYIKVQKARGLEPKTCFRKIGDSSVETHRNREMVDVRPRHRMLEQ-KLPCETF 449
Query: 81 TAGSEPES-SSYREN----C-----RKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSST 130
S P S S EN C K+++ S CQ T PEK LSLN++ +S
Sbjct: 450 QTYSGPYSISQVVENQLPHCLPAHDSKQRLDSISYCQLTRDCFPEKPVPLSLNQQENNSG 509
Query: 131 AV--------HNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKS 174
+ H S T D H GH + H KR R G + P +S
Sbjct: 510 SYSVESEVYKHLSSENNTAD-HQAGHKQK---HQKRKRHLEEGKERPEKEQS 557
>gi|58533172 zinc finger, matrin type 1 isoform 3 [Homo sapiens]
Length = 467
Score = 35.4 bits (80), Expect = 0.055
Identities = 51/172 (29%), Positives = 67/172 (38%), Gaps = 30/172 (17%)
Query: 28 SFTEKGSDEKKPFKEKG---KTAF----SHSSEKHIQRQGSEPNPNKENSEETKLKAGNS 80
SF ++ D K K +G KT F S E H R+ + P E+ KL
Sbjct: 220 SFQDELEDYIKVQKARGLEPKTCFRKIGDSSVETHRNREMVDVRPRHRMLEQ-KLPCETF 278
Query: 81 TAGSEPES-SSYREN----C-----RKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSST 130
S P S S EN C K+++ S CQ T PEK LSLN++ +S
Sbjct: 279 QTYSGPYSISQVVENQLPHCLPAHDSKQRLDSISYCQLTRDCFPEKPVPLSLNQQENNSG 338
Query: 131 AV--------HNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKS 174
+ H S T D H GH + H KR R G + P +S
Sbjct: 339 SYSVESEVYKHLSSENNTAD-HQAGHKQK---HQKRKRHLEEGKERPEKEQS 386
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 35.0 bits (79), Expect = 0.072
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 32 KGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPE---- 87
+GS+E P KE K + E++ + SE + NKE+ EE + SE E
Sbjct: 492 RGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDED 551
Query: 88 -SSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQE 139
S E+ +R+ +D EKE ++ K NSE ++
Sbjct: 552 CSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 35.0 bits (79), Expect = 0.072
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 32 KGSDEKKPFKEKGKTAFSHSSEKHIQRQGSEPNPNKENSEETKLKAGNSTAGSEPE---- 87
+GS+E P KE K + E++ + SE + NKE+ EE + SE E
Sbjct: 492 RGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDED 551
Query: 88 -SSSYRENCRKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQE 139
S E+ +R+ +D EKE ++ K NSE ++
Sbjct: 552 CSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.072
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 25 QQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQR--QGSEPNPNK-ENSEETKLKAG--N 79
+Q+ +KGS F+EK + EKH ++ GSE + K + ++ K K+G +
Sbjct: 36 EQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYS 95
Query: 80 STAGSEPESSSYRENC----------RKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRS 128
S++ S +SSS + RK+K + +++ + E + SL KK +S
Sbjct: 96 SSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKS 154
Score = 30.0 bits (66), Expect = 2.3
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 28 SFTEKGSDEKKPFKEKGK--TAFSHSSEKHIQRQGSEPNPNKENSEETKLK--AGNSTAG 83
S ++K +KK K+ G+ ++ S SS+ SE K+ K K + S+
Sbjct: 76 SSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSES 135
Query: 84 SEPESSSYRENCRKRKMSSKDSCQ---DTAGNCPEKECSLSLNKKSRSSTAVHNSEIQET 140
S E+ S ++ K+K SKD + D G K+ + K SS ++ SE E
Sbjct: 136 SMSETESDSKDSLKKKKKSKDGTEKEKDIKG--LSKKRKMYSEDKPLSSESLSESEYIEE 193
Query: 141 CDAHHRGHS 149
A + S
Sbjct: 194 VRAKKKKSS 202
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 35.0 bits (79), Expect = 0.072
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 25 QQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQR--QGSEPNPNK-ENSEETKLKAG--N 79
+Q+ +KGS F+EK + EKH ++ GSE + K + ++ K K+G +
Sbjct: 46 EQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYS 105
Query: 80 STAGSEPESSSYRENC----------RKRKMSSKDSCQDTAGNCPEKECSLSLNKKSRS 128
S++ S +SSS + RK+K + +++ + E + SL KK +S
Sbjct: 106 SSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKS 164
Score = 30.0 bits (66), Expect = 2.3
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 28 SFTEKGSDEKKPFKEKGK--TAFSHSSEKHIQRQGSEPNPNKENSEETKLK--AGNSTAG 83
S ++K +KK K+ G+ ++ S SS+ SE K+ K K + S+
Sbjct: 86 SSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSES 145
Query: 84 SEPESSSYRENCRKRKMSSKDSCQ---DTAGNCPEKECSLSLNKKSRSSTAVHNSEIQET 140
S E+ S ++ K+K SKD + D G K+ + K SS ++ SE E
Sbjct: 146 SMSETESDSKDSLKKKKKSKDGTEKEKDIKG--LSKKRKMYSEDKPLSSESLSESEYIEE 203
Query: 141 CDAHHRGHS 149
A + S
Sbjct: 204 VRAKKKKSS 212
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 34.7 bits (78), Expect = 0.094
Identities = 43/209 (20%), Positives = 76/209 (36%), Gaps = 34/209 (16%)
Query: 3 KGNEDSDLH-CSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQGS 61
+G ED ++ S+ Q +++ EK KK K++ K F S KH + + S
Sbjct: 203 EGEEDPEVEFLKSLTTKQKQKLLRKLDRLEK----KKKKKDRKKKKFQKSRSKHKKHKSS 258
Query: 62 EPNP---------------------NKENSEETKLKAGNSTAGSEPESSSYRENCRKRKM 100
+ NKE + K + N +G S ++ +KRK+
Sbjct: 259 SSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKL 318
Query: 101 SSKDSCQDTAGNCPEKECSLSLNKKSRSSTAVHNSEIQETCDAH-----HRGHSR---AC 152
+ S +++ ++ SR + +S+ + H RG R +
Sbjct: 319 HEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSRTHKHSPEKRGSERKEGSS 378
Query: 153 TGHSKRHRSRALGVQTPSIRKSLVTSVRA 181
H + RSR ++P K T RA
Sbjct: 379 RSHGREERSRRSRSRSPGSYKQRETRKRA 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.123 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,075,346
Number of Sequences: 37866
Number of extensions: 567495
Number of successful extensions: 2337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 2064
Number of HSP's gapped (non-prelim): 418
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.