Search of human proteins with 13399304

Search of human proteins with 13399304

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3G [Homo sapiens]
         (384 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...   842   0.0  
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...   435   e-122
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...   367   e-101
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol...   279   3e-75
gi|21955158 phorbolin 1 [Homo sapiens]                                246   2e-65
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly...   152   6e-37
gi|10190700 activation-induced cytidine deaminase [Homo sapiens]      151   1e-36
gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic poly...   124   1e-28
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly...   107   2e-23
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...    91   2e-18
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]        88   1e-17
gi|44888831 apolipoprotein B [Homo sapiens]                            32   1.3  
gi|122937257 thrombospondin, type I, domain containing 7B [Homo ...    29   8.1  

>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score =  842 bits (2174), Expect = 0.0
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS 60
           MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS 60

Query: 61  ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV 120
           ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
Sbjct: 61  ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV 120

Query: 121 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK 180
           ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
Sbjct: 121 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK 180

Query: 181 YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG 240
           YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG
Sbjct: 181 YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG 240

Query: 241 FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS 300
           FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS
Sbjct: 241 FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS 300

Query: 301 KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP 360
           KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP
Sbjct: 301 KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP 360

Query: 361 WDGLDEHSQDLSGRLRAILQNQEN 384
           WDGLDEHSQDLSGRLRAILQNQEN
Sbjct: 361 WDGLDEHSQDLSGRLRAILQNQEN 384


>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score =  435 bits (1118), Expect = e-122
 Identities = 219/387 (56%), Positives = 266/387 (68%), Gaps = 8/387 (2%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY 59
           M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRGQVY
Sbjct: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60

Query: 60  SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF 119
            + +YH EM F  WF    +L   + +++TW++SW+PC  C   +A FL+E P VTLTI 
Sbjct: 61  FKPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 119

Query: 120 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP 179
            ARLYY+W+ DY+ AL  L Q   G R T  IM+Y+EF +CW  FVY++ + F PW    
Sbjct: 120 AARLYYYWERDYRRALCRLSQA--GARVT--IMDYEEFAYCWENFVYNEGQQFMPWYKFD 175

Query: 180 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR 239
           + Y  LH  L EILR+ MDP TFTFNFNN+P V  R +TYLCYEVER+ N TWVL++Q  
Sbjct: 176 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM 235

Query: 240 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK 297
           GFLCN+A +      GRHAEL FLD++P  +LD  Q YRVT F SWSPCFS  CA E+  
Sbjct: 236 GFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRA 295

Query: 298 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP 357
           F+ +N HV L IF ARIYD     +E L+ L +AGA++SIMTY EF++CWDTFV  QGCP
Sbjct: 296 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP 355

Query: 358 FQPWDGLDEHSQDLSGRLRAILQNQEN 384
           FQPWDGL+EHSQ LSGRLRAILQNQ N
Sbjct: 356 FQPWDGLEEHSQALSGRLRAILQNQGN 382


>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score =  367 bits (941), Expect = e-101
 Identities = 194/385 (50%), Positives = 253/385 (65%), Gaps = 17/385 (4%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS 60
           MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRP LDAKIFRGQVYS
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 60

Query: 61  ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV 120
           + ++H EM F  WF    +L   + +++TW++SW+PC  C   +A FLAE P VTLTI  
Sbjct: 61  QPEHHAEMCFLSWFC-GNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 119

Query: 121 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK 180
           ARLYY+W+ DY+ AL  L Q      A +KIM+ +EF +CW  FVYS+ + F PW     
Sbjct: 120 ARLYYYWERDYRRALCRLSQ----AGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDD 175

Query: 181 YYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ 237
            Y  LH  L EILR+ M+   P  F F+F N     GR+E++LC+ +E + + + V  + 
Sbjct: 176 NYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPV--SW 233

Query: 238 RRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMA 296
           +RG   NQ  P  H      HAE CFL       L  + +Y VT +TSWSPC  CA E+A
Sbjct: 234 KRGVFRNQVDPETH-----CHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVA 288

Query: 297 KFISKNKHVSLCIFTARIYDD-QGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQG 355
           +F++++ +V+L IFTAR+Y       QEGLR+L++ GA + IM Y +FK+CW+ FV +  
Sbjct: 289 EFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD 348

Query: 356 CPFQPWDGLDEHSQDLSGRLRAILQ 380
            PF+PW GL  +   L  +L+ IL+
Sbjct: 349 EPFKPWKGLKYNFLFLDSKLQEILE 373



 Score =  110 bits (274), Expect = 3e-24
 Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 18/187 (9%)

Query: 201 TFTFNFNNEPWVRGRHETYLCYEVE-----RMHNDTWVLLNQRRGFLCNQAPHKHGFLEG 255
           TF++NF N P +  R+  +LCYEV+     R   D  +     RG + +Q  H       
Sbjct: 16  TFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIF----RGQVYSQPEH------- 64

Query: 256 RHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY 315
            HAE+CFL      +L   + +++T F SW+PC  C  ++A+F++++ +V+L I  AR+Y
Sbjct: 65  -HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLY 123

Query: 316 DDQGR-CQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGR 374
               R  +  L  L++AGA++ IM   EF +CW+ FV  +G PF PW   D++   L   
Sbjct: 124 YYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRT 183

Query: 375 LRAILQN 381
           L+ IL+N
Sbjct: 184 LKEILRN 190


>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3D [Homo sapiens]
          Length = 386

 Score =  279 bits (713), Expect = 3e-75
 Identities = 165/398 (41%), Positives = 224/398 (56%), Gaps = 30/398 (7%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRG--- 56
           M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRG   
Sbjct: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 60

Query: 57  ---------QVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATF 107
                    +VY   + H EM F  WF    +L  ++ +++TW++SW+PC  C   +  F
Sbjct: 61  PKRQSNHRQEVYFRFENHAEMCFLSWFCG-NRLPANRRFQITWFVSWNPCLPCVVKVTKF 119

Query: 108 LAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYS 167
           LAE P VTLTI  ARLYY+ D D++  L  L +      A +KIM+Y++F +CW  FV +
Sbjct: 120 LAEHPNVTLTISAARLYYYRDRDWRWVLLRLHK----AGARVKIMDYEDFAYCWENFVCN 175

Query: 168 QRELFEPWNNLPKYYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEV 224
           + + F PW      Y  LH  L EILR+ M+   P  F F+F N     GR+E++LC+ +
Sbjct: 176 EGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTM 235

Query: 225 ERMHNDTWVLLNQRRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFT 283
           E   + + V   ++RG   NQ  P  H      HAE CFL       L  + +Y VT +T
Sbjct: 236 EVTKHHSAVF--RKRGVFRNQVDPETH-----CHAERCFLSWFCDDILSPNTNYEVTWYT 288

Query: 284 SWSPCFSCAQEMAKFISKNKHVSLCIFTARI-YDDQGRCQEGLRTLAEAGAKISIMTYSE 342
           SWSPC  CA E+A+F++++ +V+L IFTAR+ Y      QEGL +L++ GA + IM Y +
Sbjct: 289 SWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKD 348

Query: 343 FKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQ 380
           F  CW  FV     PF+PW GL  + + L  RLR ILQ
Sbjct: 349 FVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ 386



 Score =  117 bits (292), Expect = 2e-26
 Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 7/188 (3%)

Query: 201 TFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQR--RGFLCNQAPHKHG----FLE 254
           TF  NF NEP + GR  T+LCYEV+     + +L +    RG +  +    H     F  
Sbjct: 16  TFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRF 75

Query: 255 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARI 314
             HAE+CFL      +L  ++ +++T F SW+PC  C  ++ KF++++ +V+L I  AR+
Sbjct: 76  ENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARL 135

Query: 315 YDDQGRCQEG-LRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSG 373
           Y  + R     L  L +AGA++ IM Y +F +CW+ FV ++G PF PW   D++   L  
Sbjct: 136 YYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHR 195

Query: 374 RLRAILQN 381
            L+ IL+N
Sbjct: 196 TLKEILRN 203


>gi|21955158 phorbolin 1 [Homo sapiens]
          Length = 199

 Score =  246 bits (628), Expect = 2e-65
 Identities = 126/193 (65%), Positives = 142/193 (73%), Gaps = 5/193 (2%)

Query: 194 RHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFL 253
           RH MDP  FT NFNN     GRH+TYLCYEVER+ N T V ++Q RGFL NQA +     
Sbjct: 10  RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66

Query: 254 EGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIFT 311
            GRHAEL FLD++P  +LD  Q YRVT F SWSPCFS  CA E+  F+ +N HV L IF 
Sbjct: 67  YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126

Query: 312 ARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDL 371
           ARIYD     +E L+ L +AGA++SIMTY EFKHCWDTFVDHQGCPFQPWDGLDEHSQ L
Sbjct: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186

Query: 372 SGRLRAILQNQEN 384
           SGRLRAILQNQ N
Sbjct: 187 SGRLRAILQNQGN 199



 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 70/189 (37%), Positives = 99/189 (52%), Gaps = 20/189 (10%)

Query: 17  FSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKY--------HPEM 68
           F+ NF N      R+  +LCYEV+ +  +   +     RG ++++ K         H E+
Sbjct: 18  FTSNFNNG---IGRHKTYLCYEVE-RLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAEL 73

Query: 69  RFFHWFSKWRKLHRDQEYEVTWYISWSPCTK--CTRDMATFLAEDPKVTLTIFVARLYYF 126
           RF       + L   Q Y VTW+ISWSPC    C  ++  FL E+  V L IF AR+Y +
Sbjct: 74  RFLDLVPSLQ-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDY 132

Query: 127 WDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLH 186
            DP Y+EAL+ L   RD   A + IM YDEF+HCW  FV  Q   F+PW+ L ++   L 
Sbjct: 133 -DPLYKEALQML---RDAG-AQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALS 187

Query: 187 IMLGEILRH 195
             L  IL++
Sbjct: 188 GRLRAILQN 196


>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3C [Homo sapiens]
          Length = 190

 Score =  152 bits (383), Expect = 6e-37
 Identities = 84/195 (43%), Positives = 108/195 (55%), Gaps = 6/195 (3%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPPLDAKIFRGQVY 59
           M P  RN ++ MY  TF + F N    + RN  WLC+ V+  K  S       +FR QV 
Sbjct: 1   MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD 60

Query: 60  SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF 119
           SE   H E  F  WF     L  + +Y+VTWY SWSPC  C  ++A FLA    V LTIF
Sbjct: 61  SETHCHAERCFLSWFCD-DILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF 119

Query: 120 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP 179
            ARLYYF  P YQE LRSL Q+       ++IM+Y++F++CW  FVY+  E F+PW  L 
Sbjct: 120 TARLYYFQYPCYQEGLRSLSQE----GVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLK 175

Query: 180 KYYILLHIMLGEILR 194
             + LL   L E L+
Sbjct: 176 TNFRLLKRRLRESLQ 190



 Score =  133 bits (335), Expect = 2e-31
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 7/186 (3%)

Query: 196 SMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEG 255
           +M P TF F F N      R+ET+LC+ VE +   +  +++ + G   NQ   +      
Sbjct: 11  AMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRS--VVSWKTGVFRNQVDSETHC--- 65

Query: 256 RHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY 315
            HAE CFL       L  +  Y+VT +TSWSPC  CA E+A+F++++ +V+L IFTAR+Y
Sbjct: 66  -HAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLY 124

Query: 316 DDQGRC-QEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGR 374
             Q  C QEGLR+L++ G  + IM Y +FK+CW+ FV +   PF+PW GL  + + L  R
Sbjct: 125 YFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRLLKRR 184

Query: 375 LRAILQ 380
           LR  LQ
Sbjct: 185 LRESLQ 190


>gi|10190700 activation-induced cytidine deaminase [Homo sapiens]
          Length = 198

 Score =  151 bits (381), Expect = 1e-36
 Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 12/185 (6%)

Query: 197 MDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGR 256
           M+   F + F N  W +GR ETYLCY V+R  + T   L+   G+L N+         G 
Sbjct: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDF--GYLRNK--------NGC 55

Query: 257 HAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY- 315
           H EL FL  I  W LD  + YRVT FTSWSPC+ CA+ +A F+  N ++SL IFTAR+Y 
Sbjct: 56  HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF 115

Query: 316 -DDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGR 374
            +D+    EGLR L  AG +I+IMT+ ++ +CW+TFV++    F+ W+GL E+S  LS +
Sbjct: 116 CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQ 175

Query: 375 LRAIL 379
           LR IL
Sbjct: 176 LRRIL 180



 Score = 92.4 bits (228), Expect = 6e-19
 Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 9/183 (4%)

Query: 12  MYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFF 71
           M R  F Y F N      R   +LCY VK +  +       +  G + ++   H E+ F 
Sbjct: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT---SFSLDFGYLRNKNGCHVELLFL 62

Query: 72  HWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDY 131
            + S W  L   + Y VTW+ SWSPC  C R +A FL  +P ++L IF ARLY+  D   
Sbjct: 63  RYISDW-DLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKA 121

Query: 132 Q-EALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIMLG 190
           + E LR L   R G    + IM + ++ +CW+ FV +    F+ W  L +  + L   L 
Sbjct: 122 EPEGLRRL--HRAG--VQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLR 177

Query: 191 EIL 193
            IL
Sbjct: 178 RIL 180


>gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3F isoform b [Homo sapiens]
          Length = 101

 Score =  124 bits (311), Expect = 1e-28
 Identities = 57/58 (98%), Positives = 57/58 (98%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQV 58
          MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRP LDAKIFRGQV
Sbjct: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV 58



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 201 TFTFNFNNEPWVRGRHETYLCYEVE 225
           TF++NF N P +  R+  +LCYEV+
Sbjct: 16  TFSYNFYNRPILSRRNTVWLCYEVK 40


>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3H [Homo sapiens]
          Length = 183

 Score =  107 bits (266), Expect = 2e-23
 Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 21/189 (11%)

Query: 201 TFTFNFNNEPWVRGRH---ETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRH 257
           TF   FNN+  +R  +   +  LCY++   +  T       RG+  N+        +  H
Sbjct: 8   TFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGST-----PTRGYFENK--------KKCH 54

Query: 258 AELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYDD 317
           AE+CF++ I    LD  Q Y+VTC+ +WSPC SCA E+  FI  + H++L IF +R+Y  
Sbjct: 55  AEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYH 114

Query: 318 QGRCQE-GLRTLAEAGAKISIMTYSEFKHCWDTFVDHQG----CPFQPWDGLDEHSQDLS 372
             + Q+ GLR L  +   + +M + EF  CW+ FVDH+      P++  + LD++S+ + 
Sbjct: 115 WCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELDKNSRAIK 174

Query: 373 GRLRAILQN 381
            RL  I Q+
Sbjct: 175 RRLERIKQS 183



 Score = 89.0 bits (219), Expect = 7e-18
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 15  DTFSYNFYNRPILSRR---NTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFF 71
           +TF   F N+  L R        LCY++  +  S P       RG   ++ K H E+ F 
Sbjct: 7   ETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPT------RGYFENKKKCHAEICFI 60

Query: 72  HWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDY 131
           +   K   L   Q Y+VT Y++WSPC+ C  ++  F+     + L IF +RLYY W    
Sbjct: 61  NEI-KSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQ 119

Query: 132 QEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQREL-FEPWNNL 178
           Q+ LR LC    G +  +++M + EF  CW  FV  ++ L F P+  L
Sbjct: 120 QKGLRLLC----GSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKML 163


>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 202 FTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHA--- 258
           F F F N  +  GR++T+LCY VE           Q +G    Q     G+LE  HA   
Sbjct: 52  FKFQFRNVEYSSGRNKTFLCYVVEA----------QGKG---GQVQASRGYLEDEHAAAH 98

Query: 259 --ELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYD 316
             E  F  ++P +  D    Y VT + S SPC +CA  + K +SK K++ L I   R++ 
Sbjct: 99  AEEAFFNTILPAF--DPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFM 156

Query: 317 -DQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDH---QGCPFQPWDGLDEHSQDLS 372
            ++   Q  L+ L EAG K+ IM   +F++ W  FV+    +   FQPW+ + E+     
Sbjct: 157 WEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYE 216

Query: 373 GRLRAILQ 380
            +L  IL+
Sbjct: 217 EKLADILK 224



 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 8   TVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSE-LKYHP 66
           T ER+  + F + F N    S RN  +LCY V+ +G        +  RG +  E    H 
Sbjct: 43  TGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGG---QVQASRGYLEDEHAAAHA 99

Query: 67  EMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYF 126
           E  FF+             Y VTWY+S SPC  C   +   L++   + L I V RL+ +
Sbjct: 100 EEAFFNTILP--AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMW 157

Query: 127 WDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQR---ELFEPWNNLPKYYI 183
            +P+ Q AL+ L  K  G    ++IM   +F++ W  FV  +    + F+PW ++ + ++
Sbjct: 158 EEPEIQAALKKL--KEAG--CKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFL 213

Query: 184 LLHIMLGEILR 194
                L +IL+
Sbjct: 214 YYEEKLADILK 224


>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
          Length = 236

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 30  RNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVT 89
           R    L YE+K  G SR     KI+R    +    H E+ F   F+  R  H      +T
Sbjct: 33  RKEACLLYEIKW-GMSR-----KIWRSSGKNTTN-HVEVNFIKKFTSERDFHPSMSCSIT 85

Query: 90  WYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATM 149
           W++SWSPC +C++ +  FL+  P VTL I+VARL++  D   ++ LR L         T+
Sbjct: 86  WFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNS----GVTI 141

Query: 150 KIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIM 188
           +IM   E+ HCW  FV         W   P  +++L+ +
Sbjct: 142 QIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYAL 180



 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 22/154 (14%)

Query: 209 EPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPF 268
           EPW     E  + Y+   +  +  +L   + G +  +     G     H E+ F+     
Sbjct: 19  EPW-----EFDVFYDPRELRKEACLLYEIKWG-MSRKIWRSSGKNTTNHVEVNFIK---- 68

Query: 269 WKLDLDQDYR------VTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY---DDQG 319
            K   ++D+       +T F SWSPC+ C+Q + +F+S++  V+L I+ AR++   D Q 
Sbjct: 69  -KFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQN 127

Query: 320 RCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDH 353
           R  +GLR L  +G  I IM  SE+ HCW  FV++
Sbjct: 128 R--QGLRDLVNSGVTIQIMRASEYYHCWRNFVNY 159


>gi|44888831 apolipoprotein B [Homo sapiens]
          Length = 367

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 65  HPEMRFFHW--FSKWRKLHRDQEYEVTWYISWSPCTK----CTRDMATFLAEDPKVTLTI 118
           HPE   F    +      + D    +  Y + SPC +    C   M  FL   P +TL+I
Sbjct: 93  HPESMLFEMNGYLDSAIYNNDSIRHIILYSNNSPCNEANHCCISKMYNFLITYPGITLSI 152

Query: 119 FVARLYYFWDPDY------QEALRSL 138
           + ++LY+  + D+      +EALRSL
Sbjct: 153 YFSQLYH-TEMDFPASAWNREALRSL 177


>gi|122937257 thrombospondin, type I, domain containing 7B [Homo
           sapiens]
          Length = 1577

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 204 FNFNNEPWVRGRHETYLCYEVERMHNDTWVLL--NQRRGFLCNQAPHKHGFLEGRHAELC 261
           FN ++   V  +H++Y  +     H+ +W +    Q R   C ++  ++  L      LC
Sbjct: 238 FNSDSNERVTFKHQSYKAHH----HSKSWAIEIGYQTRQVSCTRSDGQNAMLS-----LC 288

Query: 262 FLDVIPFWKLD--LDQDYRVTCFTSWSPC 288
             D  P       + +D   + ++SWSPC
Sbjct: 289 LQDSFPLTVQSCIMPKDCETSQWSSWSPC 317


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,191,419
Number of Sequences: 37866
Number of extensions: 726732
Number of successful extensions: 1604
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1523
Number of HSP's gapped (non-prelim): 25
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.