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Search of human proteins with 13376856
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376856 solute carrier family 19, member 3 [Homo sapiens]
(496 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376856 solute carrier family 19, member 3 [Homo sapiens] 986 0.0
gi|27734719 solute carrier family 19, member 2 [Homo sapiens] 484 e-137
gi|34808710 solute carrier family 19 member 1 [Homo sapiens] 360 1e-99
gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo sapiens] 53 6e-07
gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens] 53 6e-07
gi|110227626 solute carrier family 9 (sodium/hydrogen exchanger)... 33 0.46
gi|5454070 solute carrier family 9 (sodium/hydrogen exchanger), ... 32 1.7
gi|13376097 NIPA-like domain containing 2 [Homo sapiens] 31 3.0
gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens] 31 3.0
gi|239742426 PREDICTED: hypothetical protein XP_002342512, parti... 30 5.1
gi|225637552 solute carrier family 13, member 2 isoform c [Homo ... 30 5.1
gi|4506979 solute carrier family 13, member 2 isoform b [Homo sa... 30 5.1
gi|225637549 solute carrier family 13, member 2 isoform a [Homo ... 30 5.1
gi|197209974 coiled-coil and C2 domain containing 2A isoform a [... 30 5.1
gi|197209817 coiled-coil and C2 domain containing 2A isoform b [... 30 5.1
gi|67189747 ribosomal protein L6 [Homo sapiens] 30 6.6
gi|16753227 ribosomal protein L6 [Homo sapiens] 30 6.6
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 29 8.6
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 29 8.6
gi|61102725 la related protein isoform 2 [Homo sapiens] 29 8.6
gi|39725634 la related protein isoform 1 [Homo sapiens] 29 8.6
>gi|13376856 solute carrier family 19, member 3 [Homo sapiens]
Length = 496
Score = 986 bits (2549), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MDCYRTSLSSSWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWT 60
MDCYRTSLSSSWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWT
Sbjct: 1 MDCYRTSLSSSWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWT 60
Query: 61 YSYLVLLLPVFVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAE 120
YSYLVLLLPVFVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAE
Sbjct: 61 YSYLVLLLPVFVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAE 120
Query: 121 VAYYAYIYSVVSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASV 180
VAYYAYIYSVVSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASV
Sbjct: 121 VAYYAYIYSVVSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASV 180
Query: 181 SVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILST 240
SVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILST
Sbjct: 181 SVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILST 240
Query: 241 SGKLNKGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQ 300
SGKLNKGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQ
Sbjct: 241 SGKLNKGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQ 300
Query: 301 ILWDYKAPSQDSSIYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSL 360
ILWDYKAPSQDSSIYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSL
Sbjct: 301 ILWDYKAPSQDSSIYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSL 360
Query: 361 FLMHYTANIWACYAGYLIFKSSYMLLITIAVFQIAVNLNVERYALVFGINTFIALVIQTI 420
FLMHYTANIWACYAGYLIFKSSYMLLITIAVFQIAVNLNVERYALVFGINTFIALVIQTI
Sbjct: 361 FLMHYTANIWACYAGYLIFKSSYMLLITIAVFQIAVNLNVERYALVFGINTFIALVIQTI 420
Query: 421 MTVIVVDQRGLNLPVSIQFLVYGSYFAVIAGIFLMRSMYITYSTKSQKDVQSPAPSENPD 480
MTVIVVDQRGLNLPVSIQFLVYGSYFAVIAGIFLMRSMYITYSTKSQKDVQSPAPSENPD
Sbjct: 421 MTVIVVDQRGLNLPVSIQFLVYGSYFAVIAGIFLMRSMYITYSTKSQKDVQSPAPSENPD 480
Query: 481 VSHPEEESNIIMSTKL 496
VSHPEEESNIIMSTKL
Sbjct: 481 VSHPEEESNIIMSTKL 496
>gi|27734719 solute carrier family 19, member 2 [Homo sapiens]
Length = 497
Score = 484 bits (1246), Expect = e-137
Identities = 237/447 (53%), Positives = 314/447 (70%), Gaps = 9/447 (2%)
Query: 12 WIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWTYSYLVLLLPVF 71
W PT +LC +GFF+ +RPSEPFL PYL GPDKNLT E+ NEI+PVWTYSYLVLL PVF
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVF 89
Query: 72 VLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAEVAYYAYIYSVV 131
+ TDY+RYKPV++LQG+S I+TW +LL+ QG+ +Q +EFFYG+ TA E+AYY+YIYSVV
Sbjct: 90 LATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVV 149
Query: 132 SPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASVSVAFLFSLFLP 191
YQ+V+ YCRS TL +T GSVL Q+LVS+A S F LNVISL VSVAF + FLP
Sbjct: 150 DLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVAWFLP 209
Query: 192 MPKKSMFFHAKPSREIK----KSSSVNPVLEETHEGEAPGCEEQKPTSEILSTSGKLNKG 247
MP+KS+FFH PS + K + V + PG E+ + + + +
Sbjct: 210 MPQKSLFFHHIPSTCQRVNGIKVQNGGIVTDTPASNHLPGWEDIESKIPL-----NMEEP 264
Query: 248 QLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQILWDYKA 307
+ +P + V + D CYSS+ L WS+WWA +T G+ QV+NY Q LW+
Sbjct: 265 PVEEPEPKPDRLLVLKVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYTQGLWEKVM 324
Query: 308 PSQDSSIYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYTA 367
PS+ ++IYNG VEA++T GAVA FAVGY+K++W GE+ L +FS++ A ++++M
Sbjct: 325 PSRYAAIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVG 384
Query: 368 NIWACYAGYLIFKSSYMLLITIAVFQIAVNLNVERYALVFGINTFIALVIQTIMTVIVVD 427
NIW CYA Y++F+ YMLLITIA FQIA NL++ERYALVFG+NTFIAL +QT++T+IVVD
Sbjct: 385 NIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVD 444
Query: 428 QRGLNLPVSIQFLVYGSYFAVIAGIFL 454
GL L ++ QFL+Y SYFA+IA +FL
Sbjct: 445 ASGLGLEITTQFLIYASYFALIAVVFL 471
>gi|34808710 solute carrier family 19 member 1 [Homo sapiens]
Length = 591
Score = 360 bits (925), Expect = 1e-99
Identities = 192/452 (42%), Positives = 279/452 (61%), Gaps = 28/452 (6%)
Query: 11 SWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWTYSYLVLLLPV 70
SW + LC +GF + +RP E F+ PYL GPDKN T ++TNEI PV +YSYL +L+PV
Sbjct: 24 SWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQVTNEITPVLSYSYLAVLVPV 83
Query: 71 FVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAEVAYYAYIYSV 130
F+LTDY+RY PV++LQG+SF+ WLLLL G V MQ++E FY + AA +AY +YI+S+
Sbjct: 84 FLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQLMELFYSVTMAARIAYSSYIFSL 143
Query: 131 VSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASVSVAFLFSLFL 190
V P YQRV+GY R+ L SVL QLLV++ +S+ LN ISLA ++ + + +LFL
Sbjct: 144 VRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRVSFSTLNYISLAFLTFSVVLALFL 203
Query: 191 PMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTSGKLNKGQLN 250
PK+S+FF+ + S+S LE + G PG GKL
Sbjct: 204 KRPKRSLFFNRDDRGRCETSAS---ELERMNPG--PG--------------GKLGHALRV 244
Query: 251 SLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQILWDYKAPSQ 310
+ S V + ++L + +L WSLWW F +AG+ V+ YV ILW+ P+
Sbjct: 245 ACGDS-----VLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILWNEVDPTT 299
Query: 311 DSS-IYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYT--- 366
+S+ +YNGA +A +T GA+ +FA G+VK+ W +L + + AG +FL+ +T
Sbjct: 300 NSARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHP 359
Query: 367 ANIWACYAGYLIFKSSYMLLITIAVFQIAVNLNVERYALVFGINTFIALVIQTIMTVIVV 426
++IW CYA +++F+ SY L+ IA FQIA +L+ E ALVFG+NTF A +++TI+T IV
Sbjct: 360 SSIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVS 419
Query: 427 DQRGLNLPVSIQFLVYGSYFAVIAGIFLMRSM 458
D RGL LPV QF +Y YF +++ I+ + +M
Sbjct: 420 DVRGLGLPVRKQFQLYSVYFLILSIIYFLGAM 451
>gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo sapiens]
Length = 96
Score = 53.1 bits (126), Expect = 6e-07
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 400 VERYALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSIQ 438
+E YAL FGIN FIAL+IQ I+T+ VVD +GL LPV IQ
Sbjct: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQ 39
>gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens]
Length = 150
Score = 53.1 bits (126), Expect = 6e-07
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 400 VERYALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSIQ 438
+E YAL FGIN FIAL+IQ I+T+ VVD +GL LPV IQ
Sbjct: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQ 39
>gi|110227626 solute carrier family 9 (sodium/hydrogen exchanger),
member 6 isoform a [Homo sapiens]
Length = 701
Score = 33.5 bits (75), Expect = 0.46
Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 49/241 (20%)
Query: 228 CEEQK-PTSEILSTSGK----LNKGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWS 282
CE Q PT+ +++ SGK + KG+++S + +NV Q + L++ +F
Sbjct: 133 CEVQSSPTTLLVNVSGKFYEYMLKGEISSHELNNV------QDNEMLRKVTFDPEVF--- 183
Query: 283 LWWAFATAGFNQVLNYVQILWDYKAPSQDSSIYNGAVEAIATFGGAVAAFAVGYVKVNWD 342
FN +L + Y + G++ A A G A++ F +G +
Sbjct: 184 ---------FNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFLGTAISCFVIGSI----- 229
Query: 343 LLGELALVVFSVVNAGSLFLMHYTANIWACYAGYLIFKSSYMLLITIAVFQI--AVNLNV 400
+ G + L+ + AG + + L+F + + V I + ++V
Sbjct: 230 MYGCVTLMKVTGQLAGDFY-----------FTDCLLFGAIVSATDPVTVLAIFHELQVDV 278
Query: 401 ERYALVFG---INTFIALVIQTIMTVIVVDQRGLN---LPVSIQFLVYGSYFAVIAGIFL 454
E YAL+FG +N +A+V+ + +++ G N V+ F G + + +G F
Sbjct: 279 ELYALLFGESVLNDAVAIVLSS--SIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFSGSFA 336
Query: 455 M 455
M
Sbjct: 337 M 337
>gi|5454070 solute carrier family 9 (sodium/hydrogen exchanger),
member 6 isoform b [Homo sapiens]
Length = 669
Score = 31.6 bits (70), Expect = 1.7
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 317 GAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYTANIWACYAGY 376
G++ A A G A++ F +G + + G + L+ + AG + +
Sbjct: 177 GSILAYAFLGTAISCFVIGSI-----MYGCVTLMKVTGQLAGDFY-----------FTDC 220
Query: 377 LIFKSSYMLLITIAVFQI--AVNLNVERYALVFG---INTFIALVIQTIMTVIVVDQRGL 431
L+F + + V I + ++VE YAL+FG +N +A+V+ + +++ G
Sbjct: 221 LLFGAIVSATDPVTVLAIFHELQVDVELYALLFGESVLNDAVAIVLSS--SIVAYQPAGD 278
Query: 432 N---LPVSIQFLVYGSYFAVIAGIFLM 455
N V+ F G + + +G F M
Sbjct: 279 NSHTFDVTAMFKSIGIFLGIFSGSFAM 305
>gi|13376097 NIPA-like domain containing 2 [Homo sapiens]
Length = 368
Score = 30.8 bits (68), Expect = 3.0
Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 261 VFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQILWDYKAPSQDSSIYNGAVE 320
+ V + ++ + S++ + Y+ + W F ++L + +L+ YK +
Sbjct: 156 LLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKRKGMKHMV------ 209
Query: 321 AIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYTANIWACYAGYLIFK 380
+ T +A+ V VK ++ FSV++ L Y IF
Sbjct: 210 ILLTLVAILASLTVISVK------AVSGMITFSVMDKMQL--------------TYPIFY 249
Query: 381 SSYMLLITIAVFQIA-VNLNVERY--ALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSI 437
++++I VFQ+ +N + Y V +N I I I+ I+ Q L P
Sbjct: 250 IMFIIMIASCVFQVKFLNQATKLYNTTTVVPVN-HIFFTISAIIAGIIFYQEFLGAPFLT 308
Query: 438 QFLVYGSYFAVIAGIFLM 455
F+ F G+FL+
Sbjct: 309 VFIYLFGCFLSFLGVFLV 326
>gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens]
Length = 555
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 177 LASVSVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSE 236
L S+ + + L+ P F + S E ++ P+L+E+ EG +Q+P
Sbjct: 448 LFSMILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESFEGMKMRSTKQEPNG- 506
Query: 237 ILSTSGKLNKGQLNSLK------PSNVT 258
+ K+NK Q + LK PS+VT
Sbjct: 507 ----NSKVNKAQEDDLKWVEENVPSSVT 530
>gi|239742426 PREDICTED: hypothetical protein XP_002342512, partial
[Homo sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 5.1
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 235 SEILSTSGKLNKGQL-NSLKPS----NVTVDVFVQWFQDLKECYSSKRL 278
S +L ++ G L NSLK S N+TVDVF++W+++ ++RL
Sbjct: 84 SRLLEERERVGPGALKNSLKSSRPVVNLTVDVFLEWWEEYGGGQGARRL 132
>gi|225637552 solute carrier family 13, member 2 isoform c [Homo
sapiens]
Length = 549
Score = 30.0 bits (66), Expect = 5.1
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 246 KGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNY 298
+GQ+NSL P N V F WF L W LW GFN N+
Sbjct: 204 QGQINSLFPQNGNVVNFASWFSFAFPTMVILLLLAW-LWLQILFLGFNFRKNF 255
>gi|4506979 solute carrier family 13, member 2 isoform b [Homo
sapiens]
Length = 592
Score = 30.0 bits (66), Expect = 5.1
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 246 KGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNY 298
+GQ+NSL P N V F WF L W LW GFN N+
Sbjct: 247 QGQINSLFPQNGNVVNFASWFSFAFPTMVILLLLAW-LWLQILFLGFNFRKNF 298
>gi|225637549 solute carrier family 13, member 2 isoform a [Homo
sapiens]
Length = 641
Score = 30.0 bits (66), Expect = 5.1
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 246 KGQLNSLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNY 298
+GQ+NSL P N V F WF L W LW GFN N+
Sbjct: 296 QGQINSLFPQNGNVVNFASWFSFAFPTMVILLLLAW-LWLQILFLGFNFRKNF 347
>gi|197209974 coiled-coil and C2 domain containing 2A isoform a
[Homo sapiens]
Length = 1620
Score = 30.0 bits (66), Expect = 5.1
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 181 SVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGC----EEQKPTSE 236
S L +FLP+P+ ++ P+ E++ SS+ + L+ HEG G E
Sbjct: 736 SPTLLAEVFLPIPETTVVTGRAPTEEVEFSSNQHVTLD--HEGVGSGVPFSFEADGSNQL 793
Query: 237 ILSTSGKLN 245
L TSGK++
Sbjct: 794 TLMTSGKVS 802
>gi|197209817 coiled-coil and C2 domain containing 2A isoform b
[Homo sapiens]
Length = 1512
Score = 30.0 bits (66), Expect = 5.1
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 181 SVAFLFSLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGC----EEQKPTSE 236
S L +FLP+P+ ++ P+ E++ SS+ + L+ HEG G E
Sbjct: 687 SPTLLAEVFLPIPETTVVTGRAPTEEVEFSSNQHVTLD--HEGVGSGVPFSFEADGSNQL 744
Query: 237 ILSTSGKLN 245
L TSGK++
Sbjct: 745 TLMTSGKVS 753
>gi|67189747 ribosomal protein L6 [Homo sapiens]
Length = 288
Score = 29.6 bits (65), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 224 EAPGCEEQKPTSEILSTSGKLNKGQLNSLKP 254
E P +E+KP ++ + GK+ KG L + KP
Sbjct: 7 EKPDTKEKKPEAKKVDAGGKVKKGNLKAKKP 37
>gi|16753227 ribosomal protein L6 [Homo sapiens]
Length = 288
Score = 29.6 bits (65), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 224 EAPGCEEQKPTSEILSTSGKLNKGQLNSLKP 254
E P +E+KP ++ + GK+ KG L + KP
Sbjct: 7 EKPDTKEKKPEAKKVDAGGKVKKGNLKAKKP 37
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 29.3 bits (64), Expect = 8.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 203 PSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTS------GKLNKGQLNSLKPSN 256
PSR I ++ L + G PGC+ P LS S G+ Q ++ P +
Sbjct: 451 PSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRDSQNGAIAPGH 510
Query: 257 VTV 259
V+V
Sbjct: 511 VSV 513
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 29.3 bits (64), Expect = 8.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 203 PSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTS------GKLNKGQLNSLKPSN 256
PSR I ++ L + G PGC+ P LS S G+ Q ++ P +
Sbjct: 451 PSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRDSQNGAIAPGH 510
Query: 257 VTV 259
V+V
Sbjct: 511 VSV 513
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 29.3 bits (64), Expect = 8.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 187 SLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTS 241
S F P+ K+ AK R+ K S NP L E+H G E +P + +S+S
Sbjct: 798 SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPL-ESHVGWVMDSREHRPRTASISSS 851
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 29.3 bits (64), Expect = 8.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 187 SLFLPMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTS 241
S F P+ K+ AK R+ K S NP L E+H G E +P + +S+S
Sbjct: 721 SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPL-ESHVGWVMDSREHRPRTASISSS 774
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,848,989
Number of Sequences: 37866
Number of extensions: 688136
Number of successful extensions: 2343
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2328
Number of HSP's gapped (non-prelim): 25
length of query: 496
length of database: 18,247,518
effective HSP length: 106
effective length of query: 390
effective length of database: 14,233,722
effective search space: 5551151580
effective search space used: 5551151580
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.