Guide to the Human Genome
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Name: LOC149478 Sequence: fasta or formatted (291aa) NCBI GI: 211904190
Description:

hypothetical protein LOC149478

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         34           3
 C cysteine            3.4         10           1
 D aspartate           2.4          7           1
 E glutamate          10.3         30           2
 F phenylalanine       4.5         13           2
 G glycine             4.8         14           1
 H histidine           2.4          7           2
 I isoleucine          1.0          3           1
 K lysine              2.4          7           1
 L leucine            15.5         45           2
 M methionine          0.3          1           1
 N asparagine          1.7          5           2
 P proline             5.5         16           1
 Q glutamine           3.8         11           1
 R arginine            9.3         27           4
 S serine              4.5         13           1
 T threonine           2.7          8           1
 V valine             11.7         34           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC149478 
BTBD9                 0.135   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.135   BTB (POZ) domain containing 9 isoform a 
BTBD6                 0.104   BTB domain protein BDPL 
BTBD3                 0.100   BTB/POZ domain containing protein 3 isoform a 
BTBD3                 0.100   BTB/POZ domain containing protein 3 isoform b 
BTBD1                 0.099   BTB (POZ) domain containing 1 isoform 2 
BTBD1                 0.099   BTB (POZ) domain containing 1 isoform 1 
BTBD2                 0.093   BTB (POZ) domain containing 2 
BTBD9                 0.093   BTB (POZ) domain containing 9 isoform b 
KLHL20                0.082   kelch-like 20 
IPP                   0.078   intracisternal A particle-promoted polypeptide isofor...
KLHL6                 0.078   kelch-like 6 
IPP                   0.078   intracisternal A particle-promoted polypeptide isof...
SPOP                  0.077   speckle-type POZ protein 
SPOP                  0.077   speckle-type POZ protein 
SPOP                  0.077   speckle-type POZ protein 
SPOP                  0.077   speckle-type POZ protein 
SPOP                  0.077   speckle-type POZ protein 
SPOP                  0.077   speckle-type POZ protein 
KBTBD5                0.077   kelch repeat and BTB (POZ) domain containing 5 [Homo...
KBTBD3                0.075   BTB and kelch domain containing 3 
KBTBD3                0.075   BTB and kelch domain containing 3 
KLHL22                0.073   kelch-like 
KLHL7                 0.071   kelch-like 7 isoform 1 
KLHL7                 0.069   kelch-like 7 isoform 2 
KLHL5                 0.069   kelch-like 5 isoform 3 
KLHL5                 0.069   kelch-like 5 isoform 1 
KLHL26                0.069   kelch-like 26 
KLHL34                0.069   kelch-like 34 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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