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Search of human proteins with 13376439
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376439 ubiquitin domain containing 1 [Homo sapiens] 474 e-134
gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo... 308 3e-84
gi|11024714 ubiquitin B precursor [Homo sapiens] 48 6e-06
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 48 6e-06
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 48 6e-06
gi|67191208 ubiquitin C [Homo sapiens] 48 6e-06
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 48 6e-06
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 48 6e-06
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 46 2e-05
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 46 2e-05
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 46 2e-05
gi|5453760 neural precursor cell expressed, developmentally down... 45 4e-05
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 35 0.069
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 34 0.12
gi|7661870 homocysteine-inducible, endoplasmic reticulum stress-... 32 0.45
gi|8567418 ubiquilin 3 [Homo sapiens] 32 0.58
gi|77917604 ubiquitin-binding protein homolog [Homo sapiens] 32 0.58
gi|4505507 oligophrenin 1 [Homo sapiens] 31 0.76
gi|62177129 Nedd4 binding protein 3 [Homo sapiens] 31 0.76
gi|157041224 SH2 domain containing 5 isoform 2 [Homo sapiens] 31 0.99
gi|156938287 SH2 domain containing 5 isoform 1 [Homo sapiens] 31 0.99
gi|238231392 dedicator of cytokinesis 8 [Homo sapiens] 30 1.3
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 30 1.3
gi|58530857 homocysteine-inducible, endoplasmic reticulum stress... 30 1.7
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 30 2.2
gi|44662819 ubiquitin-like 4B [Homo sapiens] 30 2.2
gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens] 29 2.9
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 29 2.9
gi|157426823 NK2 homeobox 4 [Homo sapiens] 29 2.9
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 29 2.9
>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
Length = 227
Score = 474 bits (1219), Expect = e-134
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGNCVGRQRRERPAAPGHPRKRAGRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDTAPA 60
MGNCVGRQRRERPAAPGHPRKRAGRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDTAPA
Sbjct: 1 MGNCVGRQRRERPAAPGHPRKRAGRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDTAPA 60
Query: 61 FEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPIYCL 120
FEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPIYCL
Sbjct: 61 FEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPIYCL 120
Query: 121 SPPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHA 180
SPPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHA
Sbjct: 121 SPPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHA 180
Query: 181 QEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIINQPPPPQD 227
QEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIINQPPPPQD
Sbjct: 181 QEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIINQPPPPQD 227
>gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo
sapiens]
Length = 234
Score = 308 bits (788), Expect = 3e-84
Identities = 146/225 (64%), Positives = 179/225 (79%), Gaps = 3/225 (1%)
Query: 1 MGNCVGRQRRERPAAPGHPRKRA---GRNEPLKKERLKWKSDYPMTDGQLRSKRDEFWDT 57
MG CVG Q + + GRN+PLKKE+ KWKSDYPMTDGQLRSKRDEFWDT
Sbjct: 1 MGGCVGAQHDSSGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDT 60
Query: 58 APAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDELGNRYQLPI 117
APAFEGRKEIWDALKAAA+A E+NDHELAQAI+DGA+ITLPHG L ECYDELGNRYQLP+
Sbjct: 61 APAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPV 120
Query: 118 YCLSPPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQ 177
YCL+PP+N++ E ++ E+L+ PEPPP+ E L++RLSTGKD++L DTV +KR+
Sbjct: 121 YCLAPPINMIEEKSDIETLDIPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRR 180
Query: 178 LHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIINQP 222
LHA EG+EP QRWFFSG+ LTD+ + +E KI KD+V+QVI++QP
Sbjct: 181 LHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 225
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 213 FVIQVII 219
+ +++
Sbjct: 65 STLHLVL 71
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140
Query: 213 FVIQVII 219
+ +++
Sbjct: 141 STLHLVL 147
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 157 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216
Query: 213 FVIQVII 219
+ +++
Sbjct: 217 STLHLVL 223
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 213 FVIQVII 219
+ +++
Sbjct: 65 STLHLVL 71
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 213 FVIQVII 219
+ +++
Sbjct: 65 STLHLVL 71
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 213 FVIQVII 219
+ +++
Sbjct: 65 STLHLVL 71
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140
Query: 213 FVIQVII 219
+ +++
Sbjct: 141 STLHLVL 147
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 233 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 292
Query: 213 FVIQVII 219
+ +++
Sbjct: 293 STLHLVL 299
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 309 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 368
Query: 213 FVIQVII 219
+ +++
Sbjct: 369 STLHLVL 375
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 385 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 444
Query: 213 FVIQVII 219
+ +++
Sbjct: 445 STLHLVL 451
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 461 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 520
Query: 213 FVIQVII 219
+ +++
Sbjct: 521 STLHLVL 527
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 537 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 596
Query: 213 FVIQVII 219
+ +++
Sbjct: 597 STLHLVL 603
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 613 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 672
Query: 213 FVIQVII 219
+ +++
Sbjct: 673 STLHLVL 679
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI QR F+GK L D L + IQK+
Sbjct: 157 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKE 216
Query: 213 FVIQVII 219
+ +++
Sbjct: 217 STLHLVL 223
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 213 FVIQVII 219
+ +++
Sbjct: 65 STLHLVL 71
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 213 FVIQVII 219
+ +++
Sbjct: 65 STLHLVL 71
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 139 PEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLL 198
P P + + + V+ GK + L D + +K ++ +EGI P QR F+GK L
Sbjct: 59 PVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQL 118
Query: 199 TDRTRLQETKIQKDFVIQVII 219
D L + IQK+ + +++
Sbjct: 119 EDGRTLSDCNIQKEPTLHLLL 139
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 139 PEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLL 198
P P + + + V+ GK + L D + +K ++ +EGI P QR F+GK L
Sbjct: 59 PVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQL 118
Query: 199 TDRTRLQETKIQKDFVIQVII 219
D L + IQK+ + +++
Sbjct: 119 EDGRTLSDCNIQKEPTLHLLL 139
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 139 PEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLL 198
P P + + + V+ GK + L D + +K ++ +EGI P QR F+GK L
Sbjct: 59 PVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQL 118
Query: 199 TDRTRLQETKIQKDFVIQVII 219
D L + IQK+ + +++
Sbjct: 119 EDGRTLSDCNIQKEPTLHLLL 139
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 45.4 bits (106), Expect = 4e-05
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 151 LKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQ 210
+KV+ TGK++ + D V ++K ++ +EGI P QR +SGK + D + KI
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 211 KDFVIQVII 219
V+ +++
Sbjct: 63 GGSVLHLVL 71
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 34.7 bits (78), Expect = 0.069
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 142 PPSVRREFPLKVRLSTGKDVRLSASLP--DTVGQLKRQLHAQEGIEPSWQRWFFSGKLLT 199
PP ++VR G+ SL V +L+R++ +EP QR F+ GK +
Sbjct: 7 PPLSADTMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME 66
Query: 200 DRTRLQETKIQKDFVIQVIINQ 221
D L + +++ + IQ+++ Q
Sbjct: 67 DGHTLFDYEVRLNDTIQLLVRQ 88
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 151 LKVRLSTGKDVRLSASLP--DTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETK 208
++VR G+ SL V +L+R++ +EP QR F+ GK + D L + +
Sbjct: 3 IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62
Query: 209 IQKDFVIQVIINQ 221
++ + IQ+++ Q
Sbjct: 63 VRLNDTIQLLVRQ 75
>gi|7661870 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
1 [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 0.45
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 159 KDVRLSASLPDTVGQLKRQLHA--QEGIEPSWQRWFFSGKLLTDRTRLQE--TKIQKDFV 214
+D+ LS +VG LK L E P QR +SGKLL D L++ K +K V
Sbjct: 22 RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHV 81
Query: 215 IQVIINQPPP 224
+ ++ N P
Sbjct: 82 LHLVCNVKSP 91
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 31.6 bits (70), Expect = 0.58
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 138 PPEPPPSVRREFPLKVRLSTGKDVR-LSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGK 196
P P V+ +KV + T KD S + T+ QLK ++ + P F+GK
Sbjct: 9 PQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGK 68
Query: 197 LLTDRTRLQETKIQKDFVIQVIINQ 221
+L D L + ++ + ++I +
Sbjct: 69 ILKDPDSLAQCGVRDGLTVHLVIKR 93
>gi|77917604 ubiquitin-binding protein homolog [Homo sapiens]
Length = 309
Score = 31.6 bits (70), Expect = 0.58
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 167 LPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVI 218
L T +LK+++H+ G+ P+ Q+ + G + D+T L+E K+ I V+
Sbjct: 103 LDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKT-LREIKVTSGAKIMVV 153
>gi|4505507 oligophrenin 1 [Homo sapiens]
Length = 802
Score = 31.2 bits (69), Expect = 0.76
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 124 VNLLLEH-------TEEESLEPPEPPPSV--RREFPLKV--RLSTGKDVRLSASLPDTVG 172
V +L+EH EES PP PPP V RR P+ + RL + V ++SL ++
Sbjct: 553 VEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESED 612
Query: 173 QLKRQ 177
+++ Q
Sbjct: 613 EIQHQ 617
>gi|62177129 Nedd4 binding protein 3 [Homo sapiens]
Length = 544
Score = 31.2 bits (69), Expect = 0.76
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 15/76 (19%)
Query: 139 PEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLL 198
PEPPP P + S+ ++ + A LP+T +LKR L ++G P Q +L
Sbjct: 242 PEPPP------PYEFSCSSAEE--MGAVLPETCEELKRGLGDEDGSNPFTQ-------VL 286
Query: 199 TDRTRLQETKIQKDFV 214
+R RL ++++ +V
Sbjct: 287 EERQRLWLAELKRLYV 302
>gi|157041224 SH2 domain containing 5 isoform 2 [Homo sapiens]
Length = 339
Score = 30.8 bits (68), Expect = 0.99
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 117 IYCLSPPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKR 176
+ C S + LL+H EE + PEP P E PLK S+G VR P QL +
Sbjct: 53 LLCRSFQLAYLLQHPEERA--QPEPCPGPTGEVPLKPLSSSGGLVR----EPFGRDQLSQ 106
Query: 177 QLHA 180
+HA
Sbjct: 107 NVHA 110
>gi|156938287 SH2 domain containing 5 isoform 1 [Homo sapiens]
Length = 423
Score = 30.8 bits (68), Expect = 0.99
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 117 IYCLSPPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKR 176
+ C S + LL+H EE + PEP P E PLK S+G VR P QL +
Sbjct: 137 LLCRSFQLAYLLQHPEERA--QPEPCPGPTGEVPLKPLSSSGGLVR----EPFGRDQLSQ 190
Query: 177 QLHA 180
+HA
Sbjct: 191 NVHA 194
>gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]
Length = 2099
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 142 PPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQ 189
P + RR F LK+ + ++R +LP +GQ RQ + G PS Q
Sbjct: 5 PSAERRAFALKINRYSSAEIRKQFTLPPNLGQYHRQSISTSGF-PSLQ 51
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 122 PPVNLLLEHTEEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQLKRQLHAQ 181
P LLLE E E P PPP + +R+ T + + L+ P ++ LK+Q+ A
Sbjct: 294 PENELLLEEIELNISEIPPPPPVEVDMRSIGIRV-TEESLGLARVDPGSISSLKQQVSAL 352
Query: 182 EG 183
EG
Sbjct: 353 EG 354
>gi|58530857 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
2 [Homo sapiens]
Length = 390
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 159 KDVRLSASLPDTVGQLKRQLHA--QEGIEPSWQRWFFSGKLLTDRTRLQE-TKIQKDFVI 215
+D+ LS +VG LK L E P QR +SGKLL D L++ +K V+
Sbjct: 22 RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKEKRHVL 81
Query: 216 QVIINQPPP 224
++ N P
Sbjct: 82 HLVCNVKSP 90
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQE 206
VR + G+ L TV LK+Q+ EG++ F GK L D+ L E
Sbjct: 86 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 139
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 151 LKVRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQ 210
L V+L G+ L S ++V LKR + + + Q F G+LL D L + I
Sbjct: 3 LTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYCIG 62
Query: 211 KDFVIQVII 219
+ I VI+
Sbjct: 63 PNASINVIM 71
>gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens]
Length = 749
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 128 LEHTEEESLEPPEPPPSVRREFP 150
+E+ S +PP PPP + R+FP
Sbjct: 370 IENFTSVSCKPPSPPPKIERKFP 392
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 169 DTVGQLKRQLHAQEGIEP---SWQRWFFSGKLLTDRTRLQETKI-QKDFVIQVI 218
+TV LK ++ A++G + + Q+ ++GK+L+D +++ +I +K+FV+ ++
Sbjct: 23 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 76
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 132 EEESLEPPEPPPSVRREFPLKVRLSTGKDVRLSASLPDTVGQ 173
+E L PP PPP R + V + GK + AS P T GQ
Sbjct: 258 QEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTP-TPGQ 298
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 142 PPSVRREFPLKVRLSTGKD-----VRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGK 196
P P++V + T KD + AS+ + ++ R+ AQ+ F+GK
Sbjct: 4 PSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQ----DQLVLIFAGK 59
Query: 197 LLTDRTRLQETKIQKDFVIQVIINQPPPPQD 227
+L D L + I+ + ++I P QD
Sbjct: 60 ILKDGDTLNQHGIKDGLTVHLVIKTPQKAQD 90
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,313,669
Number of Sequences: 37866
Number of extensions: 549085
Number of successful extensions: 2272
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2196
Number of HSP's gapped (non-prelim): 99
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.