Guide to the Human Genome
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Name: APBB3 Sequence: fasta or formatted (484aa) NCBI GI: 95147542
Description:

amyloid beta precursor protein-binding, family B, member 3 isoform a

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [491aa] amyloid beta precursor protein-binding, family B, member 3 isoform c
alt prot [493aa] amyloid beta precursor protein-binding, family B, member 3 isoform d
alt prot [486aa] amyloid beta precursor protein-binding, family B, member 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         48           2
 C cysteine            3.3         16           2
 D aspartate           5.8         28           3
 E glutamate           4.8         23           3
 F phenylalanine       2.5         12           1
 G glycine             9.3         45           2
 H histidine           2.5         12           1
 I isoleucine          3.5         17           2
 K lysine              3.9         19           2
 L leucine            10.1         49           2
 M methionine          3.1         15           1
 N asparagine          1.7          8           2
 P proline             6.8         33           2
 Q glutamine           4.5         22           2
 R arginine            5.2         25           1
 S serine              8.9         43           2
 T threonine           3.5         17           1
 V valine              6.2         30           1
 W tryptophan          2.9         14           1
 Y tyrosine            1.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid beta precursor protein-binding, family B, me... 
APBB3                 0.995   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.993   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.992   amyloid beta precursor protein-binding, family B, me...
APBB2                 0.362   amyloid beta A4 precursor protein-binding, family B,...
APBB1                 0.320   amyloid beta A4 precursor protein-binding, family B,...
APBB1                 0.315   amyloid beta A4 precursor protein-binding, family B, ...
SETD2                 0.017   SET domain containing 2 
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally dow...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4                 0.013   neural precursor cell expressed, developmentally do...
NEDD4                 0.013   neural precursor cell expressed, developmentally do...
WWP2                  0.010   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP1                  0.010   WW domain containing E3 ubiquitin protein ligase 1 [...
PQBP1                 0.010   polyglutamine binding protein 1 
PQBP1                 0.010   polyglutamine binding protein 1 
PQBP1                 0.010   polyglutamine binding protein 1 
PQBP1                 0.010   polyglutamine binding protein 1 
PQBP1                 0.010   polyglutamine binding protein 1 
MAGI1                 0.009   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.009   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.009   membrane associated guanylate kinase, WW and PDZ dom...
GAS7                  0.008   growth arrest-specific 7 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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