Search of human proteins with 49574529

Search of human proteins with 49574529

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|49574529 hepatocellular carcinoma-associated antigen 66
[Homo sapiens]
         (597 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo...  1200   0.0  
gi|124256489 crooked neck-like 1 protein [Homo sapiens]                60   6e-09
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo...    40   0.008
gi|239753269 PREDICTED: upstream binding transcription factor, R...    36   0.11 
gi|239741686 PREDICTED: upstream binding transcription factor, R...    36   0.11 
gi|31377634 guanylate binding protein 4 [Homo sapiens]                 35   0.20 
gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa p...    35   0.26 
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s...    35   0.26 
gi|239747816 PREDICTED: upstream binding transcription factor, R...    34   0.44 
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    34   0.44 
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]         33   0.57 
gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo sapi...    33   0.97 
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]    32   1.3  
gi|224809432 transmembrane and tetratricopeptide repeat containi...    31   2.8  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    31   3.7  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    31   3.7  
gi|21264343 scaffold attachment factor B [Homo sapiens]                30   4.8  
gi|239741668 PREDICTED: upstream binding transcription factor, R...    30   4.8  
gi|169163306 PREDICTED: upstream binding transcription factor, R...    30   4.8  
gi|55770906 XPA binding protein 2 [Homo sapiens]                       30   4.8  
gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens]     30   4.8  
gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens]     30   4.8  
gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo sapi...    30   6.3  
gi|145275208 myosin IIIA [Homo sapiens]                                30   6.3  
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     30   8.2  
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]           30   8.2  

>gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo
           sapiens]
          Length = 597

 Score = 1200 bits (3105), Expect = 0.0
 Identities = 597/597 (100%), Positives = 597/597 (100%)

Query: 1   MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60
           MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY
Sbjct: 1   MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60

Query: 61  EINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKW 120
           EINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKW
Sbjct: 61  EINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKW 120

Query: 121 ATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYK 180
           ATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYK
Sbjct: 121 ATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYK 180

Query: 181 EYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHV 240
           EYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHV
Sbjct: 181 EYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHV 240

Query: 241 SLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAV 300
           SLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAV
Sbjct: 241 SLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAV 300

Query: 301 EVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRK 360
           EVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRK
Sbjct: 301 EVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRK 360

Query: 361 AHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPD 420
           AHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPD
Sbjct: 361 AHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPD 420

Query: 421 IAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKY 480
           IAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKY
Sbjct: 421 IAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKY 480

Query: 481 LDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREF 540
           LDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREF
Sbjct: 481 LDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREF 540

Query: 541 GSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAMHQTGHL 597
           GSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAMHQTGHL
Sbjct: 541 GSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAMHQTGHL 597


>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
          Length = 848

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 106/540 (19%), Positives = 212/540 (39%), Gaps = 67/540 (12%)

Query: 41  EYKIQRRTLFKED----------FINYVQYEINLLEL------------IQRRRTRIGYS 78
           +YK+++R  F+++          +I Y Q+E +L E+            +  R   +   
Sbjct: 222 DYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLK 281

Query: 79  FKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHS 138
           + + E++N  V+  + ++ RA        Q W  Y    +         +VF   +    
Sbjct: 282 YAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 341

Query: 139 NKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEK- 197
            + A W     +E+  +   + AR ++ R +  HP+  K + +Y R E  HA      K 
Sbjct: 342 EEQA-WHSYINFELRYK-EVDRARTIYERFVLVHPDV-KNWIKYARFEEKHAYFAHARKV 398

Query: 198 -----EEFEKASMD----VENPDYSEEILKGELAWIIYKNSVSIIKGAEFHVSLLSIAQL 248
                E F    MD    V    + E   + E   +IYK ++         +S     +L
Sbjct: 399 YERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD-------RISKQDAQEL 451

Query: 249 FDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQA-----KAVEVG 303
           F      +K+ + D + +  +D +    V++R  + E + +  P    A     + VE  
Sbjct: 452 FKNYTIFEKK-FGDRRGI--EDII----VSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 504

Query: 304 RKEERCCAVYEEAVKTLP---TEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRK 360
            + E    VYE A+  +P    +  WK YI   +     +     L  K  ERT  V++ 
Sbjct: 505 AEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEE----LEAKDPERTRQVYQA 560

Query: 361 AHELKLLSECQYKQLSVSLLCYNFLREALEVA--VAGTELFR-DSGTMWQLKLQVLIESK 417
           + EL    +  + ++ +    +   ++ L +A    GT + +     ++++ +++ ++ +
Sbjct: 561 SLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLR 620

Query: 418 SPDIAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLK 477
             D      E F+   P+ C   WI +AE        +   A+++ A+          L 
Sbjct: 621 EFDRCRKLYEKFLEFGPENCTS-WIKFAELETILGDIDRARAIYELAISQPRLDMPEVLW 679

Query: 478 NKYLDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFE-KEQESCNMANIREYYERA 536
             Y+D+       ++ R +++ L + R   V  +    QFE    +  ++   R+ YE A
Sbjct: 680 KSYIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEA 738



 Score = 38.9 bits (89), Expect = 0.014
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 433 KPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKYLDWAYRSGGYKK 492
           K +  +  WI +A+W E  K  +   +++++AL   +   ++TL  KY +   ++     
Sbjct: 237 KNRTVISNWIKYAQWEESLKEIQRARSIYERAL--DVDYRNITLWLKYAEMEMKNRQVNH 294

Query: 493 ARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREFGSADSDLWMDYM 552
           AR ++     + P    F+ K      E+   N+A  R+ +ER +      +   W  Y+
Sbjct: 295 ARNIWDRAITTLPRVNQFWYKYTYM--EEMLGNVAGARQVFERWME--WQPEEQAWHSYI 350

Query: 553 KEELNH 558
             EL +
Sbjct: 351 NFELRY 356


>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
           sapiens]
          Length = 717

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 387 EALEVAVAGTELFRDSGTMWQLKLQVLIESKSPDIAMLFEEAFVHLKPQVCLPLWISWAE 446
           EA +     ++L  + G M   KL       S + A ++E A   L  +  L L+ ++A+
Sbjct: 296 EAAQYLEQSSKLLAEKGDMNNAKLF------SDEAANIYERAISTLLKKNML-LYFAYAD 348

Query: 447 WSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKYLDWAYRSGGYKKARAVFKSLQE 502
           + E     E   +++ + LLA+   D   +  +Y+ +A R+ G K  R +FK  +E
Sbjct: 349 YEESRMKYEKVHSIYNR-LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 403


>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 21/139 (15%)

Query: 177 KLYKEY-FRMELMHAEKLRKEKEEFEK--ASMDVENPDYSEEILKGELAWIIY-KNSVSI 232
           K YKE   +M+  H +  RKEK+EFE+  A    E+PD  ++  K ++   +  K    +
Sbjct: 143 KKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKV 202

Query: 233 IKGAEFHVSLLSIAQLF---DFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTE 289
            K  E   SL    Q F    F  + QK   +  Q  H D   +W           S  E
Sbjct: 203 QKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFHQD---SW-----------SSKE 248

Query: 290 EQPTTKQAKAVEVGRKEER 308
            Q  + + + VE+GR+ +R
Sbjct: 249 LQHLSLRERMVEIGRRWQR 267


>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 21/139 (15%)

Query: 177 KLYKEY-FRMELMHAEKLRKEKEEFEK--ASMDVENPDYSEEILKGELAWIIY-KNSVSI 232
           K YKE   +M+  H +  RKEK+EFE+  A    E+PD  ++  K ++   +  K    +
Sbjct: 143 KKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKV 202

Query: 233 IKGAEFHVSLLSIAQLF---DFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTE 289
            K  E   SL    Q F    F  + QK   +  Q  H D   +W           S  E
Sbjct: 203 QKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFHQD---SW-----------SSKE 248

Query: 290 EQPTTKQAKAVEVGRKEER 308
            Q  + + + VE+GR+ +R
Sbjct: 249 LQHLSLRERMVEIGRRWQR 267


>gi|31377634 guanylate binding protein 4 [Homo sapiens]
          Length = 640

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 28/232 (12%)

Query: 361 AHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPD 420
           A +L+L ++   + L V   C    REA  +AV     F+D    +Q KL   IE K  D
Sbjct: 354 AQQLRLPTDTLQELLDVHAACE---REA--IAVFMEHSFKDENHEFQKKLVDTIEKKKGD 408

Query: 421 IAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTL-KNK 479
             +  EEA               + +      S+  TE++  + + +V G  ++ L + K
Sbjct: 409 FVLQNEEASA------------KYCQAELKRLSEHLTESIL-RGIFSVPGGHNLYLEEKK 455

Query: 480 YLDWAYRSGGYK--KARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERAL 537
            ++W Y+    K  KA  V ++  +S+   V     ++Q +K   +   A      ERA+
Sbjct: 456 QVEWDYKLVPRKGVKANEVLQNFLQSQ---VVVEESILQSDKALTAGEKAIAA---ERAM 509

Query: 538 REFGSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKH 589
           +E    + +L  +  KE+    +   E   Q Y   M+    E  E  + +H
Sbjct: 510 KEAAEKEQELLREKQKEQ-QQMMEAQERSFQEYMAQMEKKLEEERENLLREH 560


>gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa
           protein [Homo sapiens]
          Length = 406

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)

Query: 78  SFKKDEIENSIVHRV----QGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAM 133
           S+ +++ ++ + H      + ++  A   +     +WL    F K   T+  L  +    
Sbjct: 6   SWHEEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA 65

Query: 134 LAIHSNKPALWIMAA--KWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAE 191
           +A       LW+M A  KW   D     +AR +   A + +P   +++        + A 
Sbjct: 66  VAHCPKAEVLWLMGAKSKWLAGD---VPAARSILALAFQANPNSEEIW--------LAAV 114

Query: 192 KLRKEKEEFEKA 203
           KL  E +E+E+A
Sbjct: 115 KLESENDEYERA 126


>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
           sapiens]
          Length = 669

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 64/283 (22%), Positives = 109/283 (38%), Gaps = 32/283 (11%)

Query: 9   IEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELI 68
           IED     + +  I    H  I+   +  +  E+++ +R  F+E  I    + +  LE  
Sbjct: 293 IEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEG-IKRPYFHVKPLEKA 351

Query: 69  QRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSK 128
           Q +  +    F   EIEN    RV  +F+R         + W+ Y  + +  + +  +  
Sbjct: 352 QLKNWKEYLEF---EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIE-GVRH 407

Query: 129 VFSAMLAIH-SNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMEL 187
           VFS    IH   KP + ++ A +E E + +   AR +    L+   EC  L     R+  
Sbjct: 408 VFSRACTIHLPKKPMVHMLWAAFE-EQQGNINEARNI----LKTFEEC-VLGLAMVRLRR 461

Query: 188 MHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHVSLLSIAQ 247
           +  E+     EE E    D                    KN+ S  + + + V L     
Sbjct: 462 VSLERRHGNLEEAEHLLQDA------------------IKNAKSNNESSFYAVKL--ARH 501

Query: 248 LFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEE 290
           LF   K+L K     L+A+  D   T  Y+   E+E     ++
Sbjct: 502 LFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQ 544


>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 177 KLYKEY-FRMELMHAEKLRKEKEEFEK--ASMDVENPDYSEEILKGELAWIIY-KNSVSI 232
           K YKE   +M+  H +  RKEK+EFE+  A    E+PD  ++  K ++   +  K    +
Sbjct: 143 KKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKV 202

Query: 233 IKGAEFHVSLLSIAQLF---DFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTE 289
            K  E   SL    Q F    F  + QK   +     H D   +W           S  E
Sbjct: 203 QKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD---SW-----------SSKE 248

Query: 290 EQPTTKQAKAVEVGRKEER 308
            Q  + + + VE+GR+ +R
Sbjct: 249 LQHLSLRERMVEIGRRWQR 267


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 73/338 (21%), Positives = 143/338 (42%), Gaps = 38/338 (11%)

Query: 7    ERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEY---KIQRRTLFKEDFINYV----- 58
            E + +  P+L++L+++      ++  +  + S+ E    KIQ   + +ED I  +     
Sbjct: 1385 EHLRELQPKLDELQKLISKKEEDVSYLSGQLSEKEAALTKIQTEIIEQEDLIKALHTQLE 1444

Query: 59   -----------QYEINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDV 107
                       Q ++ L E+ Q+       S  K +I+  +   +  + ++ + K    +
Sbjct: 1445 MQAKEHDERIKQLQVELCEMKQKPEEIGEESRAKQQIQRKLQAAL--ISRKEALKENKSL 1502

Query: 108  QLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPA-LWIMAAKWEMEDRLSSESARQLFL 166
            Q  LS      +  TK+ L+ V S + A +  K   L  +A   E  D+L +E  R L  
Sbjct: 1503 QEELSLARGTIERLTKS-LADVESQVSAQNKEKDTVLGRLALLQEERDKLITEMDRSLLE 1561

Query: 167  -RALRFHPECPKLYKEYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAW-I 224
             ++L    E  KL  E    +    EKL KE E   K+S   E+ ++ E+  + +  + I
Sbjct: 1562 NQSLSSSCESLKLALEGLTED---KEKLVKEIESL-KSSKIAESTEWQEKHKELQKEYEI 1617

Query: 225  IYKNSVSIIKGAEFHVSLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEI 284
            + ++  ++   AE       I  + +  +  ++E+Y  L++   +   T   +   E E+
Sbjct: 1618 LLQSYENVSNEAE------RIQHVVEAVRQEKQELYGKLRSTEANKKETEKQLQEAEQEM 1671

Query: 285  ESQTEEQ---PTTKQAKAVEVGRKEERCCAVYEEAVKT 319
            E   E+      +KQ K +E+  + +R  A    A  T
Sbjct: 1672 EEMKEKMRKFAKSKQQKILELEEENDRLRAEVHPAGDT 1709


>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
          Length = 2115

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 188 MHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKG----AEFHVSLL 243
           M  E+L   KEE EKA  +++         K ++A I   + + I +     AE H +L 
Sbjct: 830 MFQEQLMTLKEECEKARQELQEA-------KEKVAGIESHSELQISRQQNELAELHANLA 882

Query: 244 SIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVG 303
              Q     +   +++ DDL  L      T   VAR E  +    E+Q T  +    E  
Sbjct: 883 RALQQVQEKEVRAQKLADDLSTLQEKMAATSKEVARLETLVRKAGEQQETASRELVKEPA 942

Query: 304 RKEER 308
           R  +R
Sbjct: 943 RAGDR 947


>gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo
           sapiens]
          Length = 941

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 84  IENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPAL 143
           + ++ +   + ++  A   +     +WL    F K   T+  L  +    +A       L
Sbjct: 551 VAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVL 610

Query: 144 WIMAA--KWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEKEEFE 201
           W+M A  KW   D     +AR +   A + +P   +++        + A KL  E +E+E
Sbjct: 611 WLMGAKSKWLAGD---VPAARSILALAFQANPNSEEIW--------LAAVKLESENDEYE 659

Query: 202 KA 203
           +A
Sbjct: 660 RA 661


>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
          Length = 640

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 34/179 (18%)

Query: 174 ECPKLYKEYFRMELMHAEKL-RKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNS--- 229
           +CPK  +E   M    ++K  +K KE+ +    D+E  +  EE LK E       NS   
Sbjct: 446 KCPKPMEENHSMSHKKSKKKSKKHKEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPN 505

Query: 230 --------------VSIIKGAEF---HVSLLSIAQLFDFAKDLQKEIYDDLQALHTDDPL 272
                          S I+  ++   +++++S  Q  ++  D   E YD+ +ALH     
Sbjct: 506 SSGGVKEDCTASMEPSAIELPDYLIKYIAIVSYEQRQNYKDDFNAE-YDEYRALHA---- 560

Query: 273 TWDYVARRELEIESQTEE-QPTTKQAKAVEVGRKEERCCAVYEEAVKTLPT--EAMWKC 328
             + VARR +++++Q +   P +K+ + V      E     Y++  ++ P   E  ++C
Sbjct: 561 RMETVARRFIKLDAQRKRLSPGSKEYQNV-----HEEVLQEYQKIKQSSPNYHEEKYRC 614


>gi|224809432 transmembrane and tetratricopeptide repeat containing
           3 [Homo sapiens]
          Length = 914

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 350 RLERTMTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLK 409
           RLE    ++R+A  ++   +  Y      LL  N   +A E  +   EL R++  +W   
Sbjct: 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNL 603

Query: 410 LQVLIESKSPDIAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVI 469
             V IE K P+ A+      + L P+  L L+ S     E  + +   EA  +K LL+ I
Sbjct: 604 AIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEA--RKRLLSYI 661

Query: 470 GAD 472
             +
Sbjct: 662 NEE 664


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 169  LRFHPECPKLYKEYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKN 228
            L F     KL  +Y  M  +   ++  + EE  KA  D++    S E+LK   ++ + + 
Sbjct: 3633 LTFENIMEKLRIKYSEMYTIVPAEIESQVEECRKALEDIDEK-ISNEVLKSSPSYAMRRK 3691

Query: 229  SVSIIKGAEFHVSLLSI-AQLFDFAKDLQKEIYDDLQALHT 268
               I  G      +L   ++  + A+++QK+++D+L   H+
Sbjct: 3692 IEEINNGLHNVEKMLQQKSKNIEKAQEIQKKMWDELDLWHS 3732


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 169  LRFHPECPKLYKEYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKN 228
            L F     KL  +Y  M  +   ++  + EE  KA  D++    S E+LK   ++ + + 
Sbjct: 3633 LTFENIMEKLRIKYSEMYTIVPAEIESQVEECRKALEDIDEK-ISNEVLKSSPSYAMRRK 3691

Query: 229  SVSIIKGAEFHVSLLSI-AQLFDFAKDLQKEIYDDLQALHT 268
               I  G      +L   ++  + A+++QK+++D+L   H+
Sbjct: 3692 IEEINNGLHNVEKMLQQKSKNIEKAQEIQKKMWDELDLWHS 3732


>gi|21264343 scaffold attachment factor B [Homo sapiens]
          Length = 915

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 146 MAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEKEE 199
           M A+WE E+R   E AR+  L   R   E  ++ +E    E MH E  R+ ++E
Sbjct: 633 MQAQWEREERERLEIARER-LAFQRQRLERERMERERLERERMHVEHERRREQE 685


>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 3 [Homo sapiens]
          Length = 457

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 177 KLYKEY-FRMELMHAEKLRKEKEEFEK--ASMDVENPDYSEEILKGELAWIIY-KNSVSI 232
           K YKE   +M+  + +  +KEK+EFE+       E+PD  ++  K +++  I  K    +
Sbjct: 200 KKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQKGKKSDISKRIQTKVQKKV 259

Query: 233 IKGAEFHVSLLSIAQLF---DFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTE 289
            K  E   SL    Q F    F  + QK   +     H D   +W           S  E
Sbjct: 260 QKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD---SW-----------SSKE 305

Query: 290 EQPTTKQAKAVEVGRKEER 308
            Q  + + + VE+GR+ +R
Sbjct: 306 LQHLSLRERMVEIGRRWQR 324


>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 5 [Homo sapiens]
          Length = 471

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 177 KLYKEY-FRMELMHAEKLRKEKEEFEK--ASMDVENPDYSEEILKGELAWIIY-KNSVSI 232
           K YKE   +M+  + +  +KEK+EFE+       E+PD  ++  K +++  I  K    +
Sbjct: 214 KKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQKGKKSDISKRIQTKVQKKV 273

Query: 233 IKGAEFHVSLLSIAQLF---DFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTE 289
            K  E   SL    Q F    F  + QK   +     H D   +W           S  E
Sbjct: 274 QKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD---SW-----------SSKE 319

Query: 290 EQPTTKQAKAVEVGRKEER 308
            Q  + + + VE+GR+ +R
Sbjct: 320 LQHLSLRERMVEIGRRWQR 338


>gi|55770906 XPA binding protein 2 [Homo sapiens]
          Length = 855

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 352 ERTMTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFR--DSGTMWQLK 409
           + T  V+ +  +L++ +       ++ L  + +  E+ +    G  LF+  +   +W   
Sbjct: 501 QSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTY 560

Query: 410 LQVLIES----KSPDIAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKAL 465
           L   I      K      LFE+A     P+    L++ +A+  E         AV+++A 
Sbjct: 561 LTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERAT 620

Query: 466 LAVIGADSVTLKNKYLDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCN 525
            AV  A    + N Y+  A    G    R +++   E    S +  R+M     + E C 
Sbjct: 621 RAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIE--VLSDEHAREMCLRFADME-CK 677

Query: 526 MANIREYYERALREFGSADSD------LWMDYMKEELNH 558
           +  I     RA+  F S   D       W  +   E+ H
Sbjct: 678 LGEIDR--ARAIYSFCSQICDPRTTGAFWQTWKDFEVRH 714


>gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens]
          Length = 933

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/117 (17%), Positives = 50/117 (42%)

Query: 28  AEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRTRIGYSFKKDEIENS 87
           +E  A+  K  +   +++      + ++ +V ++  +++         G   K+      
Sbjct: 71  SESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKL 130

Query: 88  IVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALW 144
           I+ +   + +RA    +  V L L+ +  C ++   + L K +  ++ +H N  ALW
Sbjct: 131 ILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALW 187


>gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens]
          Length = 1164

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/117 (17%), Positives = 50/117 (42%)

Query: 28  AEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRTRIGYSFKKDEIENS 87
           +E  A+  K  +   +++      + ++ +V ++  +++         G   K+      
Sbjct: 302 SESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKL 361

Query: 88  IVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALW 144
           I+ +   + +RA    +  V L L+ +  C ++   + L K +  ++ +H N  ALW
Sbjct: 362 ILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALW 418


>gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo sapiens]
          Length = 1369

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 458  EAVFKKALLAVIGADSVTLKNKYLDW--AYRSGGYK 491
            EA   K+ LA+  +D +T+ N YL W  A + GGY+
Sbjct: 1120 EADLAKSALAMADSDHLTIYNAYLGWKKARQEGGYR 1155


>gi|145275208 myosin IIIA [Homo sapiens]
          Length = 1616

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 123 KTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEY 182
           K    KVF  +   +  K A+ I+    ++++ + +E      L+AL  HP   + Y  Y
Sbjct: 29  KGTYGKVFKVLNKKNGQKAAVKILDPIHDIDEEIEAEYN---ILKALSDHPNVVRFYGIY 85

Query: 183 FRMELMHAEKL 193
           F+ + ++ +KL
Sbjct: 86  FKKDKVNGDKL 96


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 252  AKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVGRKEERCCA 311
            AK   + ++DD+Q    +  LT   + ++  E++S    Q    + +  E+  K E+  A
Sbjct: 1827 AKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLQA 1886

Query: 312  VYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRKAHELKLLSECQ 371
            + +   +  PTE          LE  T++ +   L   +L   M       E KL    +
Sbjct: 1887 LQQMDGRNKPTE---------LLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGAER 1937

Query: 372  YKQ 374
             KQ
Sbjct: 1938 EKQ 1940


>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
          Length = 894

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 18/125 (14%)

Query: 189 HAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHVSLLSIAQL 248
           H++K +KEK++  K     +N + S+     E  W+    S +  K   + V        
Sbjct: 85  HSKKAKKEKKKKSKKQKYEKNNESSDSSSSSEDEWVEAVPSQTPDKEKAWKV-------- 136

Query: 249 FDFAKDLQKEIYDDLQALHTDDPLTWDY-----VARRELEIESQTEEQPTTKQAKAVEVG 303
               KD +K   DD Q +  D+ +T D+     V+   L+ E +T  +   ++ +A+E  
Sbjct: 137 ----KD-EKSGKDDTQIIKRDEWMTVDFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQS 191

Query: 304 RKEER 308
           +  ER
Sbjct: 192 KLMER 196


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,982,027
Number of Sequences: 37866
Number of extensions: 874805
Number of successful extensions: 2765
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2724
Number of HSP's gapped (non-prelim): 69
length of query: 597
length of database: 18,247,518
effective HSP length: 108
effective length of query: 489
effective length of database: 14,157,990
effective search space: 6923257110
effective search space used: 6923257110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.