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Search of human proteins with 48928058
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48928058 small ubiquitin-like modifier protein 3 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 210 2e-55
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 183 2e-47
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 153 2e-38
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 121 1e-28
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 109 4e-25
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 109 4e-25
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 108 7e-25
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 98 1e-21
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 98 1e-21
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 98 1e-21
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 98 1e-21
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 96 5e-21
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 96 5e-21
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 92 7e-20
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 92 7e-20
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 92 7e-20
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 82 1e-16
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca... 49 8e-07
gi|52627149 telomeric repeat binding factor 2, interacting prote... 29 0.70
gi|118572606 hemicentin 1 [Homo sapiens] 28 1.2
gi|229608967 spermatogenic leucine zipper 1 [Homo sapiens] 28 2.0
gi|189181750 human immunodeficiency virus type I enhancer bindin... 28 2.0
gi|116089331 human immunodeficiency virus type I enhancer bindin... 28 2.0
gi|148536855 coatomer protein complex, subunit alpha isoform 1 [... 28 2.0
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [... 28 2.0
gi|7657154 hairy/enhancer-of-split related with YRPW motif-like ... 27 4.5
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 27 4.5
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 27 4.5
gi|169790971 parkin isoform 2 [Homo sapiens] 26 5.9
gi|169790969 parkin isoform 1 [Homo sapiens] 26 5.9
>gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens]
Length = 103
Score = 210 bits (535), Expect = 2e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF 103
FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
Sbjct: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF 103
>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
precursor [Homo sapiens]
Length = 95
Score = 183 bits (465), Expect = 2e-47
Identities = 91/94 (96%), Positives = 93/94 (98%), Gaps = 1/94 (1%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94
>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
Length = 95
Score = 153 bits (387), Expect = 2e-38
Identities = 78/94 (82%), Positives = 84/94 (89%), Gaps = 1/94 (1%)
Query: 1 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M+ EKP E VKTEN+ HINLKVAGQDGSVVQFKIKR TPLSKLMKAYCE +GLS++QIRF
Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
RF GQPI+ TD PAQLEMEDEDTIDVFQQ TGGV
Sbjct: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGV 94
>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
Length = 71
Score = 121 bits (304), Expect = 1e-28
Identities = 67/94 (71%), Positives = 69/94 (73%), Gaps = 25/94 (26%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER---------- 50
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
QLEMEDEDTIDVFQQQTGGV
Sbjct: 51 --------------QLEMEDEDTIDVFQQQTGGV 70
>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
homolog 2 [Homo sapiens]
Length = 206
Score = 109 bits (273), Expect = 4e-25
Identities = 59/94 (62%), Positives = 68/94 (72%), Gaps = 25/94 (26%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
+++EKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY
Sbjct: 136 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 182
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
TPAQLEMEDEDT D+FQQQ+GGV
Sbjct: 183 -----------TPAQLEMEDEDTTDMFQQQSGGV 205
>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
Length = 164
Score = 109 bits (273), Expect = 4e-25
Identities = 59/94 (62%), Positives = 68/94 (72%), Gaps = 25/94 (26%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
+++EKPKEG++TEN DHINLKVAGQ+GSVVQF+IKRHTPLSKLMKAY
Sbjct: 94 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 140
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
TPAQLEMEDEDT D+FQQQ+GGV
Sbjct: 141 -----------TPAQLEMEDEDTTDMFQQQSGGV 163
>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
Length = 70
Score = 108 bits (271), Expect = 7e-25
Identities = 58/93 (62%), Positives = 65/93 (69%), Gaps = 24/93 (25%)
Query: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
M+++KP+EGVKT+N+HINLKV GQ GSVVQFKIKRHTPLSKLMKAYCE
Sbjct: 1 MADKKPQEGVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE------------ 48
Query: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
QLEME+EDTIDVFQQQ GGV
Sbjct: 49 ------------LQLEMENEDTIDVFQQQMGGV 69
>gi|239754793 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 56/92 (60%), Positives = 59/92 (64%), Gaps = 25/92 (27%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M+ + EGVKTEN DHINLKV GQD SVVQFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 91
AQLEMEDE TIDVFQQQTG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 56/92 (60%), Positives = 59/92 (64%), Gaps = 25/92 (27%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M+ + EGVKTEN DHINLKV GQD SVVQFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 91
AQLEMEDE TIDVFQQQTG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 56/92 (60%), Positives = 59/92 (64%), Gaps = 25/92 (27%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M+ + EGVKTEN DHINLKV GQD SVVQFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 91
AQLEMEDE TIDVFQQQTG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239509111 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 56/92 (60%), Positives = 59/92 (64%), Gaps = 25/92 (27%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
M+ + EGVKTEN DHINLKV GQD SVVQFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 91
AQLEMEDE TIDVFQQQTG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 96.3 bits (238), Expect = 5e-21
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 3 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 96.3 bits (238), Expect = 5e-21
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 3 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/49 (91%), Positives = 47/49 (95%), Gaps = 1/49 (2%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 48
M++EKPKEGVKTEN DHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/49 (91%), Positives = 47/49 (95%), Gaps = 1/49 (2%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 48
M++EKPKEGVKTEN DHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/49 (91%), Positives = 47/49 (95%), Gaps = 1/49 (2%)
Query: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 48
M++EKPKEGVKTEN DHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
precursor [Homo sapiens]
Length = 76
Score = 81.6 bits (200), Expect = 1e-16
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 21 VAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDE 80
++ QD S + FK+K T L KL ++YC+RQG+ M +RF F+GQ I + TP +L ME+E
Sbjct: 1 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE 60
Query: 81 DTIDVFQQQTGG 92
D I+V+Q+QTGG
Sbjct: 61 DVIEVYQEQTGG 72
>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 interacting protein [Homo
sapiens]
Length = 419
Score = 48.9 bits (115), Expect = 8e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 14 NDHINLKVAGQDG-SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP 72
+ + L+V G++ ++ + R +PL LM Y E GLS R++ F FDG ++ + P
Sbjct: 345 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELP 404
Query: 73 AQLEMEDEDTIDVF 86
A L ME D I+V+
Sbjct: 405 ADLGMESGDLIEVW 418
>gi|52627149 telomeric repeat binding factor 2, interacting protein
[Homo sapiens]
Length = 399
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 2 SEEKPKEGVKTENDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLSMRQIRF- 59
SE +P E + E + ++ G ++ Q K + LS + +A+ + G F
Sbjct: 291 SETQPDEEEEEEEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 350
Query: 60 ----RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 91
R DG PI L+ +DEDT + ++ G
Sbjct: 351 ASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFG 386
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 39 LSKLMKAYCERQGLSMRQIRFRFDGQPI 66
++ L+K CE +GL M I + DGQPI
Sbjct: 1561 INSLIKLECETRGLPMPAITWYKDGQPI 1588
>gi|229608967 spermatogenic leucine zipper 1 [Homo sapiens]
Length = 430
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 2 SEEKPKEGVKTENDHINLKVAGQDGSVVQFK---IKRHTPLSKLMKAYCERQ---GLSMR 55
S+EK K + + + +K+ ++Q K+HT LSKL+K+Y + Q ++
Sbjct: 226 SQEKAKNRLNVQEE--TMKIRNNMEQLLQEAEHWSKQHTELSKLIKSYQKSQKDISETLG 283
Query: 56 QIRFRFDGQPINETDTPAQLE 76
F QP NE +LE
Sbjct: 284 NNGVGFQTQPNNEVSAKHELE 304
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 27 SVVQFKIKRHTPLSKLMKAYC----ERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDT 82
S+++ I+ HT + + +C + +G + ++ + + ET +LE E+ +
Sbjct: 1767 SMLKKHIRTHTDVRPYVCKHCHFAFKTKGNLTKHMKSKAHSKKCQETGVLEELEAEEGTS 1826
Query: 83 IDVFQQQTGGVPESSLAGHSF 103
D+FQ G ++ H F
Sbjct: 1827 DDLFQDSEGREGSEAVEEHQF 1847
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 27 SVVQFKIKRHTPLSKLMKAYC----ERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDT 82
S+++ I+ HT + + +C + +G + ++ + + ET +LE E+ +
Sbjct: 1767 SMLKKHIRTHTDVRPYVCKHCHFAFKTKGNLTKHMKSKAHSKKCQETGVLEELEAEEGTS 1826
Query: 83 IDVFQQQTGGVPESSLAGHSF 103
D+FQ G ++ H F
Sbjct: 1827 DDLFQDSEGREGSEAVEEHQF 1847
>gi|148536855 coatomer protein complex, subunit alpha isoform 1
[Homo sapiens]
Length = 1233
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 10 VKTENDHINLKVAGQDGSVVQFKIKRHTP 38
V + ++NL AG DG ++ FK++R P
Sbjct: 296 VLAAHPNLNLFAAGHDGGMIVFKLERERP 324
>gi|148536853 coatomer protein complex, subunit alpha isoform 2
[Homo sapiens]
Length = 1224
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 10 VKTENDHINLKVAGQDGSVVQFKIKRHTP 38
V + ++NL AG DG ++ FK++R P
Sbjct: 296 VLAAHPNLNLFAAGHDGGMIVFKLERERP 324
>gi|7657154 hairy/enhancer-of-split related with YRPW motif-like
[Homo sapiens]
Length = 328
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 4 EKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 62
++PKE ++ + GQ+G + Q TP S M+A +R+G+ ++ R R +
Sbjct: 2 KRPKEPSGSDGESDGPIDVGQEGQLSQMARPLSTPSSSQMQARKKRRGIIEKRRRDRIN 60
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 10 VKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET 69
++T I + V DG + I ++ + L + ++QGL +Q + F GQ + +
Sbjct: 427 LETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW 486
Query: 70 DTPAQLEMEDEDTI 83
++D DT+
Sbjct: 487 LGLGIYGIQDSDTL 500
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRH 36
M EE+P EG K+E+D I G++ + KIK++
Sbjct: 206 MKEEEPAEGKKSEDDGI-----GKENLAILEKIKKN 236
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 32 KIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 88
++ T + +L + +RQG+ Q+R F G+ + T +++ + + + Q+
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 32 KIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 88
++ T + +L + +RQG+ Q+R F G+ + T +++ + + + Q+
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,044
Number of Sequences: 37866
Number of extensions: 150255
Number of successful extensions: 308
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 36
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.