Guide to the Human Genome
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Name: LOC100294361 Sequence: fasta or formatted (206aa) NCBI GI: 239748082
Description:

PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         17           2
 C cysteine            2.9          6           1
 D aspartate           3.4          7           1
 E glutamate           6.3         13           1
 F phenylalanine       2.4          5           1
 G glycine             4.4          9           2
 H histidine           4.4          9           1
 I isoleucine          4.4          9           1
 K lysine              9.2         19           2
 L leucine             7.8         16           2
 M methionine          2.4          5           1
 N asparagine          1.9          4           1
 P proline             6.8         14           3
 Q glutamine           5.3         11           3
 R arginine            3.4          7           1
 S serine              7.8         16           1
 T threonine           8.7         18           2
 V valine              7.8         16           2
 W tryptophan          1.0          2           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SMT3 suppressor of mif two 3 ... 
LOC100289514          0.624   PREDICTED: hypothetical protein XP_002342366 
SUMO2                 0.254   SMT3 suppressor of mif two 3 homolog 2 isoform b pre...
SUMO2                 0.239   SMT3 suppressor of mif two 3 homolog 2 isoform a pre...
SUMO3                 0.213   small ubiquitin-like modifier protein 3 
LOC100130966          0.211   PREDICTED: similar to SMT3 supressor of mif two 3 h...
SUMO4                 0.195   SMT3 suppressor of mif two 3 homolog 4 
LOC100293325          0.195   PREDICTED: similar to Small ubiquitin-related modif...
LOC100290246          0.195   PREDICTED: hypothetical protein XP_002346995 
LOC100288889          0.195   PREDICTED: hypothetical protein XP_002342830 
LOC100288889          0.195   PREDICTED: similar to Small ubiquitin-related modif...
LOC100127922          0.165   PREDICTED: similar to mCG21560 
LOC100127922          0.165   PREDICTED: similar to mCG21560 
LOC100127922          0.165   PREDICTED: similar to mCG21560 
SUMO1                 0.056   SMT3 suppressor of mif two 3 homolog 1 isoform a pre...
SUMO1                 0.056   SMT3 suppressor of mif two 3 homolog 1 isoform a prec...
SUMO1                 0.030   SMT3 suppressor of mif two 3 homolog 1 isoform b pre...
COPA                  0.020   coatomer protein complex, subunit alpha isoform 1 [...
COPA                  0.020   coatomer protein complex, subunit alpha isoform 2 [...
ADRA1A                0.018   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.018   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.018   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.018   alpha-1A-adrenergic receptor isoform 3 
AHDC1                 0.015   AT hook, DNA binding motif, containing 1 
ATP2B4                0.013   plasma membrane calcium ATPase 4 isoform 4a 
ATP2B4                0.013   plasma membrane calcium ATPase 4 isoform 4b 
MYO18A                0.013   myosin 18A isoform b 
MYO18A                0.013   myosin 18A isoform a 
GLI2                  0.010   GLI-Kruppel family member GLI2 
SNCAIP                0.010   synuclein alpha interacting protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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