Guide to the Human Genome
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Name: LOC100293325 Sequence: fasta or formatted (103aa) NCBI GI: 239754793
Description:

PREDICTED: similar to Small ubiquitin-related modifier 2

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          5           2
 C cysteine            1.9          2           1
 D aspartate           5.8          6           2
 E glutamate           6.8          7           1
 F phenylalanine       5.8          6           2
 G glycine             4.9          5           1
 H histidine           1.9          2           1
 I isoleucine          2.9          3           1
 K lysine              6.8          7           1
 L leucine             6.8          7           1
 M methionine          3.9          4           1
 N asparagine          7.8          8           2
 P proline             2.9          3           2
 Q glutamine           7.8          8           3
 R arginine            2.9          3           1
 S serine              7.8          8           1
 T threonine           8.7          9           2
 V valine              7.8          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Small ubiquitin-related modif... 
LOC100290246          1.000   PREDICTED: hypothetical protein XP_002346995 
LOC100288889          1.000   PREDICTED: similar to Small ubiquitin-related modif...
LOC100288889          0.984   PREDICTED: hypothetical protein XP_002342830 
SUMO2                 0.505   SMT3 suppressor of mif two 3 homolog 2 isoform b pre...
SUMO2                 0.440   SMT3 suppressor of mif two 3 homolog 2 isoform a pre...
LOC100130966          0.435   PREDICTED: similar to SMT3 supressor of mif two 3 h...
LOC100294361          0.418   PREDICTED: similar to SMT3 suppressor of mif two 3 ...
LOC100289514          0.418   PREDICTED: hypothetical protein XP_002342366 
SUMO4                 0.397   SMT3 suppressor of mif two 3 homolog 4 
SUMO3                 0.397   small ubiquitin-like modifier protein 3 
LOC100127922          0.321   PREDICTED: similar to mCG21560 
LOC100127922          0.321   PREDICTED: similar to mCG21560 
LOC100127922          0.321   PREDICTED: similar to mCG21560 
SUMO1                 0.136   SMT3 suppressor of mif two 3 homolog 1 isoform a pre...
SUMO1                 0.136   SMT3 suppressor of mif two 3 homolog 1 isoform a prec...
SUMO1                 0.071   SMT3 suppressor of mif two 3 homolog 1 isoform b pre...
LEO1                  0.022   Leo1, Paf1/RNA polymerase II complex component, homo...
ADAMTS2               0.016   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS2               0.016   ADAM metallopeptidase with thrombospondin type 1 mo...
SPTBN5                0.011   spectrin, beta, non-erythrocytic 5 
FARP1                 0.005   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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