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Search of human proteins with 4885477
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885477 myoglobin [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|44955888 myoglobin [Homo sapiens] 316 6e-87
gi|44955885 myoglobin [Homo sapiens] 316 6e-87
gi|4885477 myoglobin [Homo sapiens] 316 6e-87
gi|19549331 cytoglobin [Homo sapiens] 79 1e-15
gi|4885397 hemoglobin, zeta [Homo sapiens] 70 9e-13
gi|28302131 A-gamma globin [Homo sapiens] 56 1e-08
gi|6715607 G-gamma globin [Homo sapiens] 56 1e-08
gi|4885393 epsilon globin [Homo sapiens] 52 2e-07
gi|4504347 alpha 1 globin [Homo sapiens] 52 2e-07
gi|4504345 alpha 2 globin [Homo sapiens] 52 2e-07
gi|4885395 theta 1 globin [Homo sapiens] 52 2e-07
gi|51510893 hemoglobin mu chain [Homo sapiens] 49 2e-06
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 29 1.4
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 29 1.4
gi|239753845 PREDICTED: similar to UDP-glucuronosyltransferase 2... 28 2.4
gi|239748406 PREDICTED: hypothetical protein XP_002346669 [Homo ... 28 2.4
gi|194272142 myosin IXB isoform 2 [Homo sapiens] 28 2.4
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 28 2.4
gi|4758532 ral guanine nucleotide dissociation stimulator-like 2... 28 2.4
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 28 3.1
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 28 3.1
gi|4504063 golgin 97 [Homo sapiens] 28 4.1
gi|24308133 transmembrane and coiled-coil domains 1 [Homo sapiens] 28 4.1
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 28 4.1
gi|32479525 potassium voltage-gated channel, KQT-like subfamily,... 27 5.3
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 27 5.3
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens] 27 6.9
gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens] 27 6.9
gi|105990532 apolipoprotein B precursor [Homo sapiens] 27 9.1
gi|13375616 fatty acid desaturase 3 [Homo sapiens] 27 9.1
>gi|44955888 myoglobin [Homo sapiens]
Length = 154
Score = 316 bits (809), Expect = 6e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
>gi|44955885 myoglobin [Homo sapiens]
Length = 154
Score = 316 bits (809), Expect = 6e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
>gi|4885477 myoglobin [Homo sapiens]
Length = 154
Score = 316 bits (809), Expect = 6e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
>gi|19549331 cytoglobin [Homo sapiens]
Length = 190
Score = 79.3 bits (194), Expect = 1e-15
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 3 LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 62
LS+ E + V +W ++ A+ G +L+R F P + F +FKH++ EM+ S L
Sbjct: 19 LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQL 78
Query: 63 KKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIPVKYLEFISECIIQVLQSK 119
+KH V+ AL +++ + LA ++HA KHK+ Y + +S I++V+ +
Sbjct: 79 RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEE 138
Query: 120 HPGDFGADAQGAMNKALELFRKDMASNYKELGF 152
DF + Q A K L + + YKE+G+
Sbjct: 139 FASDFPPETQRAWAKLRGLIYSHVTAAYKEVGW 171
>gi|4885397 hemoglobin, zeta [Homo sapiens]
Length = 142
Score = 69.7 bits (169), Expect = 9e-13
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
M L+ E +++++W K+ G E L RLF HP+T F F D S
Sbjct: 1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA 54
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
L+ HG+ V+ A+G +K + L++ HA ++ + +S C++ L ++
Sbjct: 55 QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARF 114
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
P DF A+A A +K L + + Y+
Sbjct: 115 PADFTAEAHAAWDKFLSVVSSVLTEKYR 142
>gi|28302131 A-gamma globin [Homo sapiens]
Length = 147
Score = 55.8 bits (133), Expect = 1e-08
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
+ ++WGKV ++ G E L RL +P T FD F +L S + + +K HG VL
Sbjct: 12 ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
Query: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
T+LG K + L++ H K + + + + ++ VL +F + Q
Sbjct: 70 TSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
Query: 131 AMNKALELFRKDMASNY 147
+ K + ++S Y
Sbjct: 130 SWQKMVTAVASALSSRY 146
>gi|6715607 G-gamma globin [Homo sapiens]
Length = 147
Score = 55.8 bits (133), Expect = 1e-08
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
+ ++WGKV ++ G E L RL +P T FD F +L S + + +K HG VL
Sbjct: 12 ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
Query: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
T+LG +K + L++ H K + + + + ++ VL +F + Q
Sbjct: 70 TSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
Query: 131 AMNKALELFRKDMASNY 147
+ K + ++S Y
Sbjct: 130 SWQKMVTGVASALSSRY 146
>gi|4885393 epsilon globin [Homo sapiens]
Length = 147
Score = 52.0 bits (123), Expect = 2e-07
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
V ++W K+ ++ G E L RL +P T FD F +L S + + +K HG VL
Sbjct: 12 VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69
Query: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
T+ G +K + + L++ H K + + + + ++ +L + +F + Q
Sbjct: 70 TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129
Query: 131 AMNKALELFRKDMASNY 147
A K + +A Y
Sbjct: 130 AWQKLVSAVAIALAHKY 146
>gi|4504347 alpha 1 globin [Homo sapiens]
Length = 142
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
M LS + V WGKV A +G E L R+F P T F F D S
Sbjct: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
+K HG V AL + + L+ HA K ++ + +S C++ L +
Sbjct: 55 QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
P +F +++K L + S Y+
Sbjct: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142
>gi|4504345 alpha 2 globin [Homo sapiens]
Length = 142
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
M LS + V WGKV A +G E L R+F P T F F D S
Sbjct: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
+K HG V AL + + L+ HA K ++ + +S C++ L +
Sbjct: 55 QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
P +F +++K L + S Y+
Sbjct: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142
>gi|4885395 theta 1 globin [Homo sapiens]
Length = 142
Score = 52.0 bits (123), Expect = 2e-07
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
M LS + LV +W K+ +++ + E L R F P T F HL D S
Sbjct: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFS---HL---DLSPGSS 54
Query: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
++ HG V AL +++ + L+ HA + ++ + + C++ L +
Sbjct: 55 QVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHY 114
Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
PGDF Q +++K L + S Y+
Sbjct: 115 PGDFSPALQASLDKFLSHVISALVSEYR 142
>gi|51510893 hemoglobin mu chain [Homo sapiens]
Length = 141
Score = 48.5 bits (114), Expect = 2e-06
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 3 LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 62
LS E + VW + G E+L+RLF +P T F HL + + + L
Sbjct: 2 LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFP---HLSACQD---ATQL 55
Query: 63 KKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPG 122
HG +L A+G ++ + A + PLA HA ++ + +C VL S
Sbjct: 56 LSHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQD 115
Query: 123 DFGADAQGAMNKAL 136
+F Q A +K L
Sbjct: 116 EFTVQMQAAWDKFL 129
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 29.3 bits (64), Expect = 1.4
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 45 DKFKHLKSEDEMKA-SEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVK 103
D F L S E+ + S +K H T + +LK+ E L SH +KHK P K
Sbjct: 635 DSFGSLPSPKELSSFSFSMKGHEKTAKSKTRSLLKRM-----ESLKLKSSHHSKHKAPSK 689
Query: 104 YLEFISECIIQ 114
IS I+Q
Sbjct: 690 LGLIISGPILQ 700
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 29.3 bits (64), Expect = 1.4
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 45 DKFKHLKSEDEMKA-SEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVK 103
D F L S E+ + S +K H T + +LK+ E L SH +KHK P K
Sbjct: 198 DSFGSLPSPKELSSFSFSMKGHEKTAKSKTRSLLKRM-----ESLKLKSSHHSKHKAPSK 252
Query: 104 YLEFISECIIQ 114
IS I+Q
Sbjct: 253 LGLIISGPILQ 263
>gi|239753845 PREDICTED: similar to UDP-glucuronosyltransferase 2B19
[Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 2.4
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 36 GHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQS-- 93
G P +++ DKF H+K++ E +L AL ++ H++ +KP Q+
Sbjct: 65 GLPLFVDQPDKFVHMKAKGEAVRVNSKTMSTTDLLNALKAVINDFTHYDQLMKPTDQTVF 124
Query: 94 ---HATKHK------IPVKYLEFISECIIQVLQSK 119
+H+ P L ++ C + VL K
Sbjct: 125 WIKFVMRHRGAKYLLPPANSLTWLQYCSLVVLACK 159
>gi|239748406 PREDICTED: hypothetical protein XP_002346669 [Homo
sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 2.4
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 36 GHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQS-- 93
G P +++ DKF H+K++ E +L AL ++ H++ +KP Q+
Sbjct: 65 GLPLFVDQPDKFVHMKAKGEAVRVNSKTMSTTDLLNALKAVINDFTHYDQLMKPTDQTVF 124
Query: 94 ---HATKHK------IPVKYLEFISECIIQVLQSK 119
+H+ P L ++ C + VL K
Sbjct: 125 WIKFVMRHRGAKYLLPPANSLTWLQYCSLVVLACK 159
>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
Length = 2022
Score = 28.5 bits (62), Expect = 2.4
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 76 ILKKKGHHEAEIKP--LAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMN 133
ILK KG + +I P L S + K I + + ++ ++ + + K P A Q ++N
Sbjct: 777 ILKSKGIKQKQIIPKNLLDSKSLKLIISMTLHDRTTKSLLHLHKKKKPPSISAQFQTSLN 836
Query: 134 KALELFRK 141
K LE K
Sbjct: 837 KLLEALGK 844
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 28.5 bits (62), Expect = 2.4
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 76 ILKKKGHHEAEIKP--LAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMN 133
ILK KG + +I P L S + K I + + ++ ++ + + K P A Q ++N
Sbjct: 777 ILKSKGIKQKQIIPKNLLDSKSLKLIISMTLHDRTTKSLLHLHKKKKPPSISAQFQTSLN 836
Query: 134 KALELFRK 141
K LE K
Sbjct: 837 KLLEALGK 844
>gi|4758532 ral guanine nucleotide dissociation stimulator-like 2
[Homo sapiens]
Length = 777
Score = 28.5 bits (62), Expect = 2.4
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 101 PVKYLEFISECIIQVLQS---KHPGDFGADAQGAMNKALELF 139
P LE +E I VL + HP DFG++A+G +++ LE F
Sbjct: 148 PTDELERTTEVAISVLSTWLASHPEDFGSEAKGQLDR-LESF 188
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 51 KSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHK 99
K+E+ M+ + DLKK L + +KG + E+ + ++HA K
Sbjct: 1451 KAEEAMQEASDLKKIKRNYQLELESLNHEKGKLQREVDRITRAHAVAEK 1499
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 28.1 bits (61), Expect = 3.1
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 47 FKHLKSEDEMKASEDL---KKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVK 103
FK K D K ED KK A L+ + KKK EAE KP S A + +K
Sbjct: 116 FKSRKDRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALK 175
>gi|4504063 golgin 97 [Homo sapiens]
Length = 767
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 27 QEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAE 86
++ +++L +GH L + + + E++A LK A V+ +L+ +G +AE
Sbjct: 525 EQEILQLERGHNSALLQIHQL-----QAELEALRTLKAEEAAVVAEQEDLLRLRGPLQAE 579
Query: 87 IKPLAQSHAT 96
+ +SH T
Sbjct: 580 ALSVNESHVT 589
>gi|24308133 transmembrane and coiled-coil domains 1 [Homo
sapiens]
Length = 188
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 45 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAE 86
DK+K LK+E E K S+ L+K T+ + G KKK + E
Sbjct: 34 DKYKRLKAEVE-KQSKKLEKKKETITESAGRQQKKKIERQEE 74
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 17 KVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDE---MKASEDLKKH 65
K++ D+ QE+L + + + K +K K +KSED+ MK E L K+
Sbjct: 705 KLQQDVRKRKQEILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTLEVLTKN 756
>gi|32479525 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 2 [Homo sapiens]
Length = 549
Score = 27.3 bits (59), Expect = 5.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 59 SEDLKKHGATVLTALGGILKKKGHHEAEIK 88
+EDL G T+LT + I + + HH A IK
Sbjct: 359 AEDLDLEGETLLTPITHISQLREHHRATIK 388
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 27.3 bits (59), Expect = 5.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 59 SEDLKKHGATVLTALGGILKKKGHHEAEIK 88
+EDL G T+LT + I + + HH A IK
Sbjct: 486 AEDLDLEGETLLTPITHISQLREHHRATIK 515
>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
Length = 1865
Score = 26.9 bits (58), Expect = 6.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 32 RLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTAL 73
R + HPE EK +K K L + +E ++ HG V AL
Sbjct: 1549 RYLQEHPEAHEKIEKLKDLIAWQIPFLAEGIRIHGDKVTEAL 1590
>gi|194018490 ATPase family, AAA domain containing 3C [Homo
sapiens]
Length = 411
Score = 26.9 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 41 LEKFDKFKHLKSEDEMKASEDLKKHGATVLTAL 73
LE+ K K L +ED K E ++KH T L ++
Sbjct: 18 LEQQSKLKQLVNEDLRKQEESVQKHHQTFLESI 50
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 26.6 bits (57), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 35 KGHPETLEKFDKFKHLKSEDEM 56
K + ET KFDK+K KS DE+
Sbjct: 3221 KSYNETKIKFDKYKAEKSHDEL 3242
>gi|13375616 fatty acid desaturase 3 [Homo sapiens]
Length = 445
Score = 26.6 bits (57), Expect = 9.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 82 HHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADA 128
H+ + + PL +S KH + + F++ + V K GD DA
Sbjct: 395 HNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLKKSGDIWLDA 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,932,773
Number of Sequences: 37866
Number of extensions: 240620
Number of successful extensions: 722
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 35
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.