Search of human proteins with 4885165

Search of human proteins with 4885165

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885165 cystatin A [Homo sapiens]
         (98 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885165 cystatin A [Homo sapiens]                                  200   2e-52
gi|4503117 cystatin B [Homo sapiens]                                  107   3e-24
gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens]     32   0.11 
gi|4503107 cystatin C precursor [Homo sapiens]                         31   0.19 
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H...    30   0.32 
gi|4503105 cystatin SA precursor [Homo sapiens]                        30   0.54 
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]            29   0.92 
gi|239754606 PREDICTED: similar to hCG1983816 [Homo sapiens]           27   3.5  
gi|239749152 PREDICTED: similar to hCG1983816 [Homo sapiens]           27   3.5  
gi|239508897 PREDICTED: similar to hCG1983816 [Homo sapiens]           27   3.5  
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 27   4.6  
gi|21553329 family with sequence similarity 84, member A [Homo s...    27   4.6  
gi|8922256 estrogen-related receptor beta like 1 [Homo sapiens]        27   4.6  
gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]                       26   6.0  
gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]                     26   6.0  
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F...    26   7.8  
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]                   26   7.8  

>gi|4885165 cystatin A [Homo sapiens]
          Length = 98

 Score =  200 bits (508), Expect = 2e-52
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG 60
          MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG
Sbjct: 1  MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG 60

Query: 61 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98
          DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF
Sbjct: 61 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98


>gi|4503117 cystatin B [Homo sapiens]
          Length = 98

 Score =  107 bits (266), Expect = 3e-24
 Identities = 52/98 (53%), Positives = 70/98 (71%)

Query: 1  MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG 60
          M+ G  S  +PAT E Q I D+V+ QLEEK N+ +   +AV +K+QVVAGTNY+IKV  G
Sbjct: 1  MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60

Query: 61 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98
          D  ++HL+VF+SLP +N+ L L+ YQ +K K DELT F
Sbjct: 61 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98


>gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens]
          Length = 797

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 27  LEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYMHLKVFKSLPGQNEDLVLTGYQ 86
           LEE+  E    L   ++K ++    + Y +  AG ++    K+FK LPG  +  VL G++
Sbjct: 231 LEEQRVELSVSLVNQKFKAELADSQSPYYQELAGKSQLQMQKIFKKLPGFKKIHVL-GFR 289

Query: 87  VDKNKD 92
             K KD
Sbjct: 290 PKKEKD 295


>gi|4503107 cystatin C precursor [Homo sapiens]
          Length = 146

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 4  GGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGK--LEAVQYKTQVVAGTNYYIKVRAG 60
          GG  +A      ++  +D    +  + +N+ Y    L+ V+ + Q+VAG NY++ V  G
Sbjct: 37 GGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELG 95


>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
            sapiens]
          Length = 4515

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 8    EAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIK 56
            EA     E+QE +  + PQ+E+KT ET   +E ++  +QVV      +K
Sbjct: 2921 EATTLVTEMQEELLILGPQVEQKTKETETLMEKLRKDSQVVEKVQMLVK 2969


>gi|4503105 cystatin SA precursor [Homo sapiens]
          Length = 141

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 1  MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGK--LEAVQYKTQVVAGTNYYIKVR 58
          +I GG+ +A      +Q  +  V  +  + T + Y +  L  ++ + Q+V G NY+  + 
Sbjct: 29 IIEGGIYDADLNDERVQRALHFVISEYNKATEDEYYRRLLRVLRAREQIVGGVNYFFDIE 88

Query: 59 AG 60
           G
Sbjct: 89 VG 90


>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
          Length = 4242

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 3    PGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAG--TNYYIKVRAG 60
            PG   E  PA+ E       +KP+LEE T  T    +++     V  G   ++ ++ + G
Sbjct: 2282 PGKDEEMAPASTEPPTPEPPIKPRLEELT-VTDATPDSLSLSWTVPEGQFDHFLVQYKNG 2340

Query: 61   DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98
            D +    +V    PG  + + ++G + D      L GF
Sbjct: 2341 DGQPKATRV----PGHEDRVTISGLEPDNKYKMNLYGF 2374


>gi|239754606 PREDICTED: similar to hCG1983816 [Homo sapiens]
          Length = 298

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 18  EIVDKVKPQLEEKTNETYGKLEAVQYKTQV 47
           +I + ++ Q++E  N+TYG+   ++Y  QV
Sbjct: 105 DIANTLREQVQELFNKTYGEALGIKYPVQV 134


>gi|239749152 PREDICTED: similar to hCG1983816 [Homo sapiens]
          Length = 265

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 18  EIVDKVKPQLEEKTNETYGKLEAVQYKTQV 47
           +I + ++ Q++E  N+TYG+   ++Y  QV
Sbjct: 105 DIANTLREQVQELFNKTYGEALGIKYPVQV 134


>gi|239508897 PREDICTED: similar to hCG1983816 [Homo sapiens]
          Length = 265

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 18  EIVDKVKPQLEEKTNETYGKLEAVQYKTQV 47
           +I + ++ Q++E  N+TYG+   ++Y  QV
Sbjct: 105 DIANTLREQVQELFNKTYGEALGIKYPVQV 134


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 8    EAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYK 44
            + KP T   Q ++++++ ++++  N+  GK+E V  K
Sbjct: 1862 QGKPLTDNKQSLIEELQRKVKKLENQLEGKVEEVDLK 1898


>gi|21553329 family with sequence similarity 84, member A [Homo
           sapiens]
          Length = 292

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 10/48 (20%)

Query: 46  QVVAGTN-----YYIKVRAGDNKYMHLKVFKSLPGQNEDLVLTGYQVD 88
           +V AGT      YY+KV  G+NK +H   F SL    EDL+    ++D
Sbjct: 231 EVPAGTQPPQQQYYLKVHLGENK-VHTARFHSL----EDLIREKRRID 273


>gi|8922256 estrogen-related receptor beta like 1 [Homo sapiens]
          Length = 429

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 4   GGLSEAKPATPEIQEIVDKVKPQLEEK 30
           GG++E      E+ E ++KVK ++EEK
Sbjct: 337 GGVTERTRLLSEVMEELEKVKQEMEEK 363


>gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]
          Length = 299

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 9   AKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYI---KVRAGDNKYM 65
           A+      Q +V+K K +  +K  +  G+ EA +   + ++    YI   K+RA  N   
Sbjct: 203 AQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYIKLRKIRAAQN--- 259

Query: 66  HLKVFKSLPGQNEDLVLTGYQVDKNKDDE 94
              + K++      + LT   +  N  DE
Sbjct: 260 ---ISKTIATSQNRIYLTADNLVLNLQDE 285


>gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]
          Length = 299

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 9   AKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYI---KVRAGDNKYM 65
           A+      Q +V+K K +  +K  +  G+ EA +   + ++    YI   K+RA  N   
Sbjct: 203 AQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYIKLRKIRAAQN--- 259

Query: 66  HLKVFKSLPGQNEDLVLTGYQVDKNKDDE 94
              + K++      + LT   +  N  DE
Sbjct: 260 ---ISKTIATSQNRIYLTADNLVLNLQDE 285


>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
           subunit [Homo sapiens]
          Length = 1977

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 24  KPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYM 65
           +PQL E TN   G+L    + T+    T+ +  + A D   M
Sbjct: 437 RPQLAELTNRRRGRLRWFSHSTRSTHSTSSHASLPASDTGSM 478


>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
          Length = 1417

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 15   EIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQ 46
            ++  I+D+ K +LE+KTN    +LE +Q+ T+
Sbjct: 1022 QLDMILDQTKTELEKKTN-AVKELEKLQHSTE 1052


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,942,457
Number of Sequences: 37866
Number of extensions: 143278
Number of successful extensions: 400
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 17
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.