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Search of human proteins with 48717485
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48717485 DDI1, DNA-damage inducible 1, homolog 1 [Homo
sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48717485 DDI1, DNA-damage inducible 1, homolog 1 [Homo sapiens] 783 0.0
gi|62955833 DNA-damage inducible protein 2 [Homo sapiens] 561 e-160
gi|11034819 nuclear receptor interacting protein 3 [Homo sapiens] 58 1e-08
gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens] 55 1e-07
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 40 0.005
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 39 0.008
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 39 0.008
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 39 0.008
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 37 0.031
gi|145580580 ubiquilin-like [Homo sapiens] 37 0.041
gi|225735627 disco-interacting protein 2A isoform f [Homo sapiens] 36 0.053
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 36 0.069
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 36 0.069
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 36 0.069
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 36 0.069
gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens] 36 0.069
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 35 0.12
gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo ... 34 0.20
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 34 0.26
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 34 0.26
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 34 0.26
gi|20270377 DPY30 domain containing 1 [Homo sapiens] 32 0.77
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 1.0
gi|225735625 disco-interacting protein 2A isoform e [Homo sapiens] 32 1.0
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 32 1.0
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 32 1.0
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 32 1.0
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 32 1.0
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 32 1.0
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 32 1.0
>gi|48717485 DDI1, DNA-damage inducible 1, homolog 1 [Homo sapiens]
Length = 396
Score = 783 bits (2021), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS 60
MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS
Sbjct: 1 MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS 60
Query: 61 LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP 120
LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP
Sbjct: 61 LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP 120
Query: 121 AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS 180
AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS
Sbjct: 121 AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS 180
Query: 181 QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ 240
QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ
Sbjct: 181 QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ 240
Query: 241 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG 300
VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG
Sbjct: 241 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG 300
Query: 301 RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF 360
RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF
Sbjct: 301 RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF 360
Query: 361 LPEGELPLCSRMVSGQDESSDKEITHSVMDSGRKEH 396
LPEGELPLCSRMVSGQDESSDKEITHSVMDSGRKEH
Sbjct: 361 LPEGELPLCSRMVSGQDESSDKEITHSVMDSGRKEH 396
>gi|62955833 DNA-damage inducible protein 2 [Homo sapiens]
Length = 399
Score = 561 bits (1445), Expect = e-160
Identities = 284/398 (71%), Positives = 329/398 (82%), Gaps = 15/398 (3%)
Query: 1 MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS 60
ML+TVYCVRRDLSEVTFSLQV DFEL NF+ LCE ES +P E QI++ ER L ++H S
Sbjct: 1 MLLTVYCVRRDLSEVTFSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRS 60
Query: 61 LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP 120
L SYGLKDGD+V+L QK+N PR P + PN PR+DFS IAVPGTSS R + P P
Sbjct: 61 LASYGLKDGDVVILRQKENADPRPPVQFPNLPRIDFSSIAVPGTSSPRQRQP-------P 113
Query: 121 AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS 180
Q+S + GE + QGL +PAL+R MLL+NPH+LSLLKERNPPLAEALLSG LE FS
Sbjct: 114 GTQQSHS-SPGEITSSPQGLDNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFS 172
Query: 181 QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ 240
+VL+EQQ+++A REQER+RL++ADP D EAQAKIEE+IRQQNIEENM IA+EEAPESFGQ
Sbjct: 173 RVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQ 232
Query: 241 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG 300
V MLYINCKVNGHP+KAFVDSGAQMTIMSQACAERCNIMRLVDRRWAG+AKGVGTQ+IIG
Sbjct: 233 VVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIG 292
Query: 301 RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF 360
RVHLAQ+QIEGDFL CSFSILE+QPMDMLLGLDML+RHQCSIDLKKNVLVIGTTG+QT F
Sbjct: 293 RVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTF 352
Query: 361 LPEGELPLCSRMVSG-------QDESSDKEITHSVMDS 391
LPEGELP C+R+ G +E +D+E+ ++ S
Sbjct: 353 LPEGELPECARLAYGAGREDVRPEEIADQELAEALQKS 390
>gi|11034819 nuclear receptor interacting protein 3 [Homo sapiens]
Length = 241
Score = 58.2 bits (139), Expect = 1e-08
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 227 MNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLV-DRR 285
+N A E + + M+ ++C+ G +KA VD+G ++S AC +R + V +
Sbjct: 91 LNQAKSEGLKKSEEDDMILVSCQCAGKDVKALVDTGCLYNLISLACVDRLGLKEHVKSHK 150
Query: 286 WAGVAKGVGTQ-RIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDL 344
G + +++G++ I + L C ++++D ++ LGL LR +C I+L
Sbjct: 151 HEGEKLSLPRHLKVVGQIEHLVITLGSLRLDCPAAVVDDNEKNLSLGLQTLRSLKCIINL 210
Query: 345 KKNVLVIGTTGTQTYFLPEGELPLCSRMVSGQDESSD 381
K+ L++G T + E+P + +D +S+
Sbjct: 211 DKHRLIMGKTDKE-------EIPFVETVSLNEDNTSE 240
>gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens]
Length = 281
Score = 55.1 bits (131), Expect = 1e-07
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 240 QVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAG-VAKGVGTQRI 298
++ L +NCK L+ VD+G Q +S C R + + V + AG +A G TQ
Sbjct: 156 EIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKASAGDLAPGPPTQ-- 213
Query: 299 IGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQT 358
V ++Q+ + + CS +++ + + LGL L +C IDL+ VL + ++
Sbjct: 214 ---VEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLEHGVLRLKAPFSEL 270
Query: 359 YFLP 362
FLP
Sbjct: 271 PFLP 274
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 39.7 bits (91), Expect = 0.005
Identities = 56/255 (21%), Positives = 94/255 (36%), Gaps = 38/255 (14%)
Query: 27 LRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCSLGSYGLKDGDIVVLLQK------DNV 80
++ FK + +++ +I ++L +D +L +G+KDG V L+ K D
Sbjct: 34 VKEFKEEISRRFKAQQDQLVLIFAGKIL-KDGDTLNQHGIKDGLTVHLVIKTPQKAQDPA 92
Query: 81 GPRA-------PGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEK 133
A P AP+ + A P TS S G +R+ S G G
Sbjct: 93 AATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSP 152
Query: 134 VA---------GLQGLGSPAL-----------IRSMLLSNPHDLSLLKERNPPLAEALLS 173
A G+ GLGS L ++ L+SNP LS + E NP + + + +
Sbjct: 153 SATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIME-NPLVQDMMSN 211
Query: 174 GSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIA--- 230
L + Q ++ R E + L R+ Q + N + A
Sbjct: 212 PDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSN 271
Query: 231 IEEAPESFGQVTMLY 245
+E P + + +Y
Sbjct: 272 LESIPGGYNALRRMY 286
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 38.9 bits (89), Expect = 0.008
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 103 GTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKE 162
G SS + +QQQR + G E A L R+ LL + L+E
Sbjct: 1087 GESSELQEQMVEQQQRAEELRAQLGRKEEELQAALARAEDEGGARAQLLKS------LRE 1140
Query: 163 RNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLD-----REAQAKIEEE 217
LAEA E ++ E+QR E E LR D LD +E ++K E+E
Sbjct: 1141 AQAALAEAQEDLESERVARTKAEKQRRDLGEELEALRGELEDTLDSTNAQQELRSKREQE 1200
Query: 218 IRQ--QNIEENMNI---AIEEAPESFGQ 240
+ + + +EE I A++E + GQ
Sbjct: 1201 VTELKKTLEEETRIHEAAVQELRQRHGQ 1228
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 38.9 bits (89), Expect = 0.008
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 103 GTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKE 162
G SS + +QQQR + G E A L R+ LL + L+E
Sbjct: 1079 GESSELQEQMVEQQQRAEELRAQLGRKEEELQAALARAEDEGGARAQLLKS------LRE 1132
Query: 163 RNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLD-----REAQAKIEEE 217
LAEA E ++ E+QR E E LR D LD +E ++K E+E
Sbjct: 1133 AQAALAEAQEDLESERVARTKAEKQRRDLGEELEALRGELEDTLDSTNAQQELRSKREQE 1192
Query: 218 IRQ--QNIEENMNI---AIEEAPESFGQ 240
+ + + +EE I A++E + GQ
Sbjct: 1193 VTELKKTLEEETRIHEAAVQELRQRHGQ 1220
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 38.9 bits (89), Expect = 0.008
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 103 GTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKE 162
G SS + +QQQR + G E A L R+ LL + L+E
Sbjct: 1120 GESSELQEQMVEQQQRAEELRAQLGRKEEELQAALARAEDEGGARAQLLKS------LRE 1173
Query: 163 RNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLD-----REAQAKIEEE 217
LAEA E ++ E+QR E E LR D LD +E ++K E+E
Sbjct: 1174 AQAALAEAQEDLESERVARTKAEKQRRDLGEELEALRGELEDTLDSTNAQQELRSKREQE 1233
Query: 218 IRQ--QNIEENMNI---AIEEAPESFGQ 240
+ + + +EE I A++E + GQ
Sbjct: 1234 VTELKKTLEEETRIHEAAVQELRQRHGQ 1261
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 37.0 bits (84), Expect = 0.031
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 81 GPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGL 140
G +APG P+QP ++ + A PG S R QH + + PA + G +K +G
Sbjct: 166 GQQAPGPEPSQPLLELTPRA-PG--SPRGQH--EPSKPPPAGETVTGGFGAKK---RKGS 217
Query: 141 GSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVLMEQ------QREKALRE 194
S A L N +L ++ + P S + FSQ+L ++ QR+ R+
Sbjct: 218 SSQAPASKKL--NKEELPVIPKGKPKSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQ 275
Query: 195 QERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIE 232
+ +L A L+ E + + +E ++Q EN+ +E
Sbjct: 276 ERKLAKDFARHLEEEKERRRQE--KKQRRAENLKRRLE 311
>gi|145580580 ubiquilin-like [Homo sapiens]
Length = 475
Score = 36.6 bits (83), Expect = 0.041
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 21/175 (12%)
Query: 21 VSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCSLGSYGLKDGDIVVLLQKDNV 80
V+ D +R FK + A + ++++ ++ M LL +DH +L G+ DG + L+ K
Sbjct: 46 VADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLL-KDHDTLSQRGIMDGHTIYLVIKSKQ 104
Query: 81 GPRAPGRA-PNQPRVD--FSGIAVPGTSSSRPQHPGQQQQRTPAAQ---------RSQGL 128
G R+ + + P D G SS Q G Q A +Q L
Sbjct: 105 GSRSLAHSFRDLPTNDPCHRDRNTKGNSSRVHQPTGMNQAPVELAHFVGSDAPKVHTQNL 164
Query: 129 ASGEKVAGLQGLGSPALIRSM--------LLSNPHDLSLLKERNPPLAEALLSGS 175
Q L +P++ R + +S D L ++NP ++ LL S
Sbjct: 165 EVSHPECKAQMLENPSIQRLLSNMEFMWQFISEHLDTQQLMQQNPEVSRLLLDNS 219
>gi|225735627 disco-interacting protein 2A isoform f [Homo sapiens]
Length = 798
Score = 36.2 bits (82), Expect = 0.053
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 77 KDNVGPRAPGRAPNQPRVDFS-----------GIAVPGTSSSRPQHPGQQQQRTPAAQRS 125
+D R PGR + P S G + ++SS HPG + P+A +
Sbjct: 141 EDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPSAAAT 200
Query: 126 QGLASGEKVAGLQG---LGSPALIRSMLLSNPHDL--SLLKERNPPLAEALLSGSLETFS 180
G A+ +AGL+ +G P + S + S L +L + + PPL E ++ F
Sbjct: 201 PGAAATTALAGLEAHTHIGVP--VNSRVSSKIQQLLNTLKRPKRPPLKEFF----VDDFE 254
Query: 181 QVLMEQQ 187
++L QQ
Sbjct: 255 ELLEVQQ 261
>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
b [Homo sapiens]
Length = 1173
Score = 35.8 bits (81), Expect = 0.069
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 18/158 (11%)
Query: 67 KDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQ---HPGQQQQRTPAAQ 123
K+G + + PR PN P + S +PG+S PQ PG T +
Sbjct: 736 KNGSFKKKVSSTDPRPRDWRGPPNSPDLKLSDSDIPGSSEESPQVVEAPG-----TESDP 790
Query: 124 RSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVL 183
R + E V +Q L S LL N L + E + E Q
Sbjct: 791 RLPTVLESELVQRIQTL-------SQLLLN---LQAVIAHQDSYVETQRAAIQEREKQFR 840
Query: 184 MEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
++ R L EQER R + +R A K++ ++R +
Sbjct: 841 LQSTRGNLLLEQERQRNFEKQREERAALEKLQSQLRHE 878
>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
[Homo sapiens]
Length = 1015
Score = 35.8 bits (81), Expect = 0.069
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 18/158 (11%)
Query: 67 KDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQ---HPGQQQQRTPAAQ 123
K+G + + PR PN P + S +PG+S PQ PG T +
Sbjct: 578 KNGSFKKKVSSTDPRPRDWRGPPNSPDLKLSDSDIPGSSEESPQVVEAPG-----TESDP 632
Query: 124 RSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVL 183
R + E V +Q L S LL N L + E + E Q
Sbjct: 633 RLPTVLESELVQRIQTL-------SQLLLN---LQAVIAHQDSYVETQRAAIQEREKQFR 682
Query: 184 MEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
++ R L EQER R + +R A K++ ++R +
Sbjct: 683 LQSTRGNLLLEQERQRNFEKQREERAALEKLQSQLRHE 720
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 35.8 bits (81), Expect = 0.069
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 98 GIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHD 156
G + P + SRP+ PG + TP+A+R QGL++G G R + L+ P D
Sbjct: 46 GASPPPSPRSRPEGPGPPRPATPSARRPQGLSAGVSA------GPAQRSRPLQLAGPRD 98
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 35.8 bits (81), Expect = 0.069
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 98 GIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHD 156
G + P + SRP+ PG + TP+A+R QGL++G G R + L+ P D
Sbjct: 46 GASPPPSPRSRPEGPGPPRPATPSARRPQGLSAGVSA------GPAQRSRPLQLAGPRD 98
>gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]
Length = 647
Score = 35.8 bits (81), Expect = 0.069
Identities = 61/225 (27%), Positives = 82/225 (36%), Gaps = 61/225 (27%)
Query: 81 GPRAPGRAPNQPRVDFSGIAVPGTSSSRP--QHPGQ-------------------QQQRT 119
GPR P R P P A TS +P Q PG+ Q R
Sbjct: 42 GPRCPARRPCSP-----ASAPAPTSPKKPKIQAPGETFPTDWSPPPVEFLNPRVLQASRE 96
Query: 120 PAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALL------- 172
AQR G V G QGL A L H L L +R L E L
Sbjct: 97 APAQRWVG------VVGPQGLRRLAGELPEELEQEH-LDLDPKRGLALPEKLFWNTSGLS 149
Query: 173 ------------SGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEI-- 218
SGS L++++RE+AL EQER RL + L+ + EEE+
Sbjct: 150 QQAAAPEFSWGGSGSYFNNLDYLLQEKREQAL-EQERERLLLQECLNLNSLDLDEEEVPL 208
Query: 219 --RQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDS 261
+ + E +++++ P T+ C HPL +DS
Sbjct: 209 TPEHRMLVEKYSVSLQTIPPVHPGETVFLPRC----HPLPCILDS 249
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 35.0 bits (79), Expect = 0.12
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 10 RDLSEVTFSLQVSPDFELRNFKVLCEAE---SRVPVEEIQIIHMERLLIEDHCSLGSYGL 66
+ L + TF +++ PD ++ K EAE PV ++I+ ++L +D + Y +
Sbjct: 8 KTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRI 66
Query: 67 KDGDIVVLL---QKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQ 123
+ + VV++ K G AP A S A P +S+S P P P A
Sbjct: 67 DEKNFVVVMVTKTKAGQGTSAPPEA--------SPTAAPESSTSFPPAPTSGMSHPPPAA 118
Query: 124 RSQGLASGE 132
R S E
Sbjct: 119 REDKSPSEE 127
>gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo
sapiens]
Length = 142
Score = 34.3 bits (77), Expect = 0.20
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 147 RSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPL 206
R L + S +KE P L ++ +G+ SQ E++RE+ RE++R +
Sbjct: 33 RENLAGLTNSTSSVKEEPPTLRHSM-AGTSARKSQRREEKRREEKRREEKRREEKRREGK 91
Query: 207 DREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQVT 242
RE + + EEE ++ EE EE SF T
Sbjct: 92 RREKEEEKEEEEEEEEEEEEEEEEEEEEEVSFSLAT 127
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 33.9 bits (76), Expect = 0.26
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 84 APGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSP 143
A +Q RV G P R + R AQ Q +A G + L+G P
Sbjct: 58 AQSSGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHP 117
Query: 144 ALIRSMLLSNPHDLSLLKERN----PPLAEALLSGSLETFSQVLMEQQREKALREQERLR 199
+++ + DL+ L+ +N PL+ A +S + + ++++ ++ + L +++ R
Sbjct: 118 VVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVS-MVHSVPELMVSSEQAEQLGREDQQR 176
Query: 200 LY 201
L+
Sbjct: 177 LH 178
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 33.9 bits (76), Expect = 0.26
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 84 APGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSP 143
A +Q RV G P R + R AQ Q +A G + L+G P
Sbjct: 58 AQSSGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHP 117
Query: 144 ALIRSMLLSNPHDLSLLKERN----PPLAEALLSGSLETFSQVLMEQQREKALREQERLR 199
+++ + DL+ L+ +N PL+ A +S + + ++++ ++ + L +++ R
Sbjct: 118 VVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVS-MVHSVPELMVSSEQAEQLGREDQQR 176
Query: 200 LY 201
L+
Sbjct: 177 LH 178
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 33.9 bits (76), Expect = 0.26
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 79 NVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQ 138
N G ++ A + S + PG+S PG+Q + P LAS A LQ
Sbjct: 1311 NSGKQSNSGATKRASPSNSRRSSPGSSRKTTPSPGRQNSKAPKLT----LASQTNAALLQ 1366
Query: 139 GLGSP--ALIRSMLLSNP------HDLSLLKERNPPLAEALLSGSLETFSQVL-----ME 185
+ P L+ L+NP + S L +N ++ A + G +E + L +
Sbjct: 1367 NVELPRNVLVSPTPLANPPVPGSFPNNSGLNPQNSTVSVAAVGGVVEDNKESLNVPQDSD 1426
Query: 186 QQREKALREQERLRLYTADPLD-----REAQAKIEEEIRQQN----IEENMNI---AIEE 233
Q ++ +EQ + L + E Q+K + + N +EEN N+ A+ E
Sbjct: 1427 CQNSQSRKEQVNIELKAVPAQEVKMVVPEDQSKKDGQPSDPNKLPSVEENKNLVSPAMRE 1486
Query: 234 APESFGQV 241
AP S Q+
Sbjct: 1487 APTSLSQL 1494
>gi|20270377 DPY30 domain containing 1 [Homo sapiens]
Length = 177
Score = 32.3 bits (72), Expect = 0.77
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 184 MEQQREKALREQERL-RLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQVT 242
+E++RE AL EQE + RL + L ++ Q ++ E+ Q E ++ A E G+
Sbjct: 57 LERERELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEM 116
Query: 243 MLYINCKVNG----HPLKAFVDSGAQMTIMS 269
+ + V H +A +DSG + +S
Sbjct: 117 RMNMENLVRNEDILHSEEATLDSGKTLAEIS 147
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.0 bits (71), Expect = 1.0
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 27/188 (14%)
Query: 62 GSYGLKDGDIVVLLQKDN---VGPRAP--------GRAPNQPRVDFSGIAVPG----TSS 106
G G+ V +LQ+ + +GP+ P R + P++ G + G T+
Sbjct: 3797 GPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQGLMGHRLVTAQ 3856
Query: 107 SRPQHPGQQQQRTPAA----QRSQGLASGEKVAGLQGLGS-PALIRSMLLSNPHDLSLLK 161
+ Q QQQ + A Q+S SG+ Q +GS L + L L +
Sbjct: 3857 QQQQQQQHQQQGSMAGLSHLQQSLMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQLQQQQ 3916
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
++ L + Q L +QQ+++ L++Q++ +L ++ Q + +++ +QQ
Sbjct: 3917 QQQ-------LQQQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQ 3969
Query: 222 NIEENMNI 229
++ M +
Sbjct: 3970 QQQQQMGL 3977
>gi|225735625 disco-interacting protein 2A isoform e [Homo sapiens]
Length = 1110
Score = 32.0 bits (71), Expect = 1.0
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 8 VRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCSLGSYGLK 67
VR L+E+ L E + E ++P+ +R + H S+ +Y
Sbjct: 17 VRESLAELELELSEDVHTEAVQAALAKYKERKMPMPS------KRRSVLVHSSVETYTPP 70
Query: 68 DGDIVVLLQKDNVGPRAPGRAPNQPRVDFS-----------GIAVPGTSSSRPQHPGQQQ 116
D +D R PGR + P S G + ++SS HPG +
Sbjct: 71 DTSSA---SEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRP 127
Query: 117 QRTPAAQRSQGLASGEKVAGLQ 138
P+A + G A+ +AGL+
Sbjct: 128 TTAPSAAATPGAAATTALAGLE 149
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
E+ E L + Q+ EQQR++ EQER RL + R Q + EE +R++
Sbjct: 2510 EQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRK 2569
Query: 222 NIE 224
E
Sbjct: 2570 QEE 2572
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
E+ E L + Q+ EQQR++ EQER RL + R Q + EE +R++
Sbjct: 2514 EQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRK 2573
Query: 222 NIE 224
E
Sbjct: 2574 QEE 2576
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
E+ E L + Q+ EQQR++ EQER RL + R Q + EE +R++
Sbjct: 2510 EQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRK 2569
Query: 222 NIE 224
E
Sbjct: 2570 QEE 2572
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
E+ E L + Q+ EQQR++ EQER RL + R Q + EE +R++
Sbjct: 2478 EQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRK 2537
Query: 222 NIE 224
E
Sbjct: 2538 QEE 2540
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
E+ E L + Q+ EQQR++ EQER RL + R Q + EE +R++
Sbjct: 2647 EQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRK 2706
Query: 222 NIE 224
E
Sbjct: 2707 QEE 2709
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 162 ERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQ 221
E+ E L + Q+ EQQR++ EQER RL + R Q + EE +R++
Sbjct: 2488 EQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRK 2547
Query: 222 NIE 224
E
Sbjct: 2548 QEE 2550
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,280,371
Number of Sequences: 37866
Number of extensions: 724452
Number of successful extensions: 3472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 3319
Number of HSP's gapped (non-prelim): 242
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.