Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13375938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13375938 lin-28 homolog [Homo sapiens]
(209 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13375938 lin-28 homolog [Homo sapiens] 437 e-123
gi|51972214 lin-28 homolog B [Homo sapiens] 268 2e-72
gi|156415990 Y box binding protein 2 [Homo sapiens] 68 5e-12
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 67 1e-11
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 66 2e-11
gi|34098946 nuclease sensitive element binding protein 1 [Homo s... 63 2e-10
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 44 1e-04
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 39 0.002
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens] 39 0.004
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens] 39 0.004
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens] 37 0.009
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens] 37 0.012
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens] 37 0.012
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens] 37 0.012
gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens] 37 0.012
gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens] 37 0.012
gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens] 37 0.012
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 35 0.046
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 33 0.17
gi|46559747 hypothetical protein LOC399947 [Homo sapiens] 32 0.30
gi|239757097 PREDICTED: hypothetical protein [Homo sapiens] 32 0.51
gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo ... 32 0.51
gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo ... 32 0.51
gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens] 32 0.51
gi|4505011 lysyl oxidase-like 2 precursor [Homo sapiens] 31 0.86
gi|19743801 zinc finger protein 274 isoform c [Homo sapiens] 31 0.86
gi|7706507 zinc finger protein 274 isoform a [Homo sapiens] 31 0.86
gi|19743798 zinc finger protein 274 isoform b [Homo sapiens] 31 0.86
gi|223633947 zinc finger, CCHC domain containing 24 [Homo sapiens] 30 1.5
gi|38044290 zinc finger, CCHC domain containing 8 [Homo sapiens] 30 1.5
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 437 bits (1124), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTA 60
MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTA
Sbjct: 1 MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTA 60
Query: 61 RAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS 120
RAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS
Sbjct: 61 RAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS 120
Query: 121 ERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQ 180
ERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQ
Sbjct: 121 ERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQ 180
Query: 181 GPSAQGKPTYFREEEEEIHSPTLLPEAQN 209
GPSAQGKPTYFREEEEEIHSPTLLPEAQN
Sbjct: 181 GPSAQGKPTYFREEEEEIHSPTLLPEAQN 209
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 268 bits (685), Expect = 2e-72
Identities = 135/197 (68%), Positives = 150/197 (76%), Gaps = 10/197 (5%)
Query: 11 GGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPV 70
GG +K E P + PE A +E Q+L G G CKWFNVRMGFGF+SM R G LD PV
Sbjct: 4 GGASKGGGEEPGKLPEPAE---EESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPV 60
Query: 71 DVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQ 130
DVFVHQSKL MEGFRSLKEGE VEFTFKKS+KGLESIRVTGPGG C+GSERRPKGK++Q
Sbjct: 61 DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQ 120
Query: 131 KRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK--AQQGPSAQGKP 188
KR+ KGDRCYNCGGLDHHAKEC LPPQPKKCH+CQSI HMVA+CP K AQ S+QG
Sbjct: 121 KRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQG-- 178
Query: 189 TYFREEEEEIHSPTLLP 205
R+E E + LP
Sbjct: 179 ---RQEAESQPCTSTLP 192
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 68.2 bits (165), Expect = 5e-12
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 25 PEDAARA-ADEPQL-LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME 82
P AR+ AD+P L + G KWFNVR G+GF++ D DVFVHQ+ +
Sbjct: 77 PAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRN-------DTKEDVFVHQTAIKRN 129
Query: 83 G----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQK 131
RS+ +GE VEF + KG E+ VTGPGGV GS P + ++
Sbjct: 130 NPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR 182
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 67.0 bits (162), Expect = 1e-11
Identities = 51/139 (36%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 10 AGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPP 69
A G A AA A EDA + ++L G KWFNVR G+GF++ D
Sbjct: 64 ATGTAAAASLATAAGSEDAEKKVLATKVL---GTVKWFNVRNGYGFINRN-------DTK 113
Query: 70 VDVFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS----E 121
DVFVHQ+ + RS+ +GE VEF + KG E+ VTGP GV GS +
Sbjct: 114 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173
Query: 122 RRPKGKSMQKRRSKGDRCY 140
RR + RR R Y
Sbjct: 174 RRRYRRGYYGRRRGPPRNY 192
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 66.2 bits (160), Expect = 2e-11
Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 10 AGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPP 69
A G A AA A EDA + ++L G KWFNVR G+GF++ D
Sbjct: 64 ATGTAAAASLATAAGSEDAEKKVLATKVL---GTVKWFNVRNGYGFINRN-------DTK 113
Query: 70 VDVFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS 120
DVFVHQ+ + RS+ +GE VEF + KG E+ VTGP GV GS
Sbjct: 114 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
>gi|34098946 nuclease sensitive element binding protein 1 [Homo
sapiens]
Length = 324
Score = 63.2 bits (152), Expect = 2e-10
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 97
G KWFNVR G+GF++ D DVFVHQ+ + RS+ +GE VEF
Sbjct: 61 GTVKWFNVRNGYGFINRN-------DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 98 KKSAKGLESIRVTGPGGVFCIGSE 121
+ KG E+ VTGPGGV GS+
Sbjct: 114 VEGEKGAEAANVTGPGGVPVQGSK 137
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 43.9 bits (102), Expect = 1e-04
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 116 FCIGSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVAS 173
+C G G++ + G+ CYNCG H AK+CK P + ++ C+ C + H+
Sbjct: 48 YCCGES----GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARD 103
Query: 174 CPLKAQQGPSAQGKPTYFREE 194
C + +Q + GK + +++
Sbjct: 104 CDRQKEQKCYSCGKLGHIQKD 124
Score = 38.5 bits (88), Expect = 0.004
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 133 RSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQG 181
R K +CY+CG L H K+C KC+ C I H+ +C KA+ G
Sbjct: 106 RQKEQKCYSCGKLGHIQKDC----AQVKCYRCGEIGHVAINCS-KARPG 149
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 120 SERRPKGKSMQKRRS--KGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCP 175
+ R G+ Q+ S K C NC H +K C LP + ++C C H++ SCP
Sbjct: 222 ANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCP 279
>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
Length = 170
Score = 38.5 bits (88), Expect = 0.004
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVASC 174
D CYNCG H AK+CK P + ++ C+ C H+ C
Sbjct: 65 DACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 35.0 bits (79), Expect = 0.046
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
+ +R + CYNCG H A++C + +KC+ C H+ C
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 125
Score = 34.7 bits (78), Expect = 0.060
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 119 GSERRPKGKSMQ-KRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
G R +G+ Q S D CY CG H AK+C L Q C+ C H+ C
Sbjct: 26 GRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDL--QEDACYNCGRGGHIAKDC 80
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
+CY CG H A C + C+ C H+ C ++A
Sbjct: 129 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLARECTIEA 168
>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
Length = 177
Score = 38.5 bits (88), Expect = 0.004
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVASC 174
D CYNCG H AK+CK P + ++ C+ C H+ C
Sbjct: 72 DACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 35.0 bits (79), Expect = 0.046
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
+ +R + CYNCG H A++C + +KC+ C H+ C
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 132
Score = 32.7 bits (73), Expect = 0.23
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
D CY CG H AK+C L Q C+ C H+ C
Sbjct: 52 DICYRCGESGHLAKDCDL--QEDACYNCGRGGHIAKDC 87
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
+CY CG H A C + C+ C H+ C ++A
Sbjct: 136 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLARECTIEA 175
>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
Length = 172
Score = 37.4 bits (85), Expect = 0.009
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 119 GSERRPKGKSMQ-KRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
G R +G+ Q S D CY CG H AK+C L + C+ C H+ C
Sbjct: 26 GRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDC 82
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVASC 174
+ CYNCG H AK+CK P + ++ C+ C H+ C
Sbjct: 67 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 35.0 bits (79), Expect = 0.046
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
+ +R + CYNCG H A++C + +KC+ C H+ C
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 127
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
+CY CG H A C + C+ C H+ C ++A
Sbjct: 131 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLARECTIEA 170
>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
Length = 171
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVASC 174
+ CYNCG H AK+CK P + ++ C+ C H+ C
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 105
Score = 35.0 bits (79), Expect = 0.046
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
+ +R + CYNCG H A++C + +KC+ C H+ C
Sbjct: 83 EPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 126
Score = 34.3 bits (77), Expect = 0.078
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 119 GSERRPKGKSMQ-KRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
G R +G+ Q S D CY CG H AK+C L + + C+ C H+ C
Sbjct: 26 GRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDC 81
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
+CY CG H A C + C+ C H+ C ++A
Sbjct: 130 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLARECTIEA 169
>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
Length = 178
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVASC 174
+ CYNCG H AK+CK P + ++ C+ C H+ C
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 35.0 bits (79), Expect = 0.046
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
+ +R + CYNCG H A++C + +KC+ C H+ C
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 133
Score = 32.3 bits (72), Expect = 0.30
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
D CY CG H AK+C L + + C+ C H+ C
Sbjct: 52 DICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDC 88
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
+CY CG H A C + C+ C H+ C ++A
Sbjct: 137 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLARECTIEA 176
>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
Length = 179
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVASC 174
+ CYNCG H AK+CK P + ++ C+ C H+ C
Sbjct: 74 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 113
Score = 35.4 bits (80), Expect = 0.035
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 137 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
D CY CG H AK+C L + C+ C H+ C
Sbjct: 52 DICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDC 89
Score = 35.0 bits (79), Expect = 0.046
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC 174
+ +R + CYNCG H A++C + +KC+ C H+ C
Sbjct: 91 EPKREREQCCYNCGKPGHLARDCDHADE-QKCYSCGEFGHIQKDC 134
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
+CY CG H A C + C+ C H+ C ++A
Sbjct: 138 KCYRCGETGHVAINCSKTSE-VNCYRCGESGHLARECTIEA 177
>gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 139 CYNCGGLDHHAKECKLPPQP-------KKCHFCQSISHMVASCP 175
CY CG +H +CK P KC C + H+ SCP
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
Score = 32.3 bits (72), Expect = 0.30
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKK-------CHFCQSISHMVASCP 175
+C+ CG + H ++ C P PK C C S+ H+ CP
Sbjct: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 139 CYNCGGLDHHAKECKLPPQP-------KKCHFCQSISHMVASCP 175
CY CG +H +CK P KC C + H+ SCP
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
Score = 32.3 bits (72), Expect = 0.30
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKK-------CHFCQSISHMVASCP 175
+C+ CG + H ++ C P PK C C S+ H+ CP
Sbjct: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 37.0 bits (84), Expect = 0.012
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 139 CYNCGGLDHHAKECKLPPQP-------KKCHFCQSISHMVASCP 175
CY CG +H +CK P KC C + H+ SCP
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
Score = 32.3 bits (72), Expect = 0.30
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 138 RCYNCGGLDHHAKECKLPPQPKK-------CHFCQSISHMVASCP 175
+C+ CG + H ++ C P PK C C S+ H+ CP
Sbjct: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 35.0 bits (79), Expect = 0.046
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 118 IGSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK 177
+G R + ++RR K + C CG H+A C P K S S P
Sbjct: 274 VGGARMRLTQEEKERRRKLNLCLYCGTGGHYADNC-----PAKA----SKSSPAGKLPGP 324
Query: 178 AQQGPSAQGKPTYFREEEEEIHSPTL 203
A +GPSA G P R +++ SP L
Sbjct: 325 AVEGPSATG-PEIIRSPQDDASSPHL 349
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 33.1 bits (74), Expect = 0.17
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 112 PGGVFCIGSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMV 171
P F GS G Q DRC+ CG H + C+ + C+ C H
Sbjct: 332 PKTCFKCGSRTHMSGSCTQ------DRCFRCGEEGHLSPYCR---KGIVCNLCGKRGHAF 382
Query: 172 ASCPLKAQQGPSAQ 185
A CP +AQ
Sbjct: 383 AQCPKAVHNSVAAQ 396
>gi|46559747 hypothetical protein LOC399947 [Homo sapiens]
Length = 197
Score = 32.3 bits (72), Expect = 0.30
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 121 ERRPKGKSMQKRRSKGDRCY-----NCGGLDH-------HAKECKLPPQPKKCHFC--QS 166
+RR K + MQ+ + + +R + GGL HAKE +L QP+ FC +
Sbjct: 86 KRRMKKRKMQRAQEEYERDHCSGSRGGGGLPRPGRQAPTHAKETRLERQPRDSPFCAPSN 145
Query: 167 ISHMVASCPLKAQQGPSAQGKP 188
S + +S P QGP A P
Sbjct: 146 ASSLSSSSPGLPCQGPCAPPPP 167
>gi|239757097 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 119 GSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
GS R+ + R S+ RC + GG + C P P+ C +A
Sbjct: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC---------------RA 77
Query: 179 QQGPSAQGKPTYFREEEEEIHSPTLL 204
++GPSA P R +E P L
Sbjct: 78 RRGPSAHLAPGTQRTYMQETRLPRAL 103
>gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo
sapiens]
Length = 160
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 119 GSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
GS R+ + R S+ RC + GG + C P P+ C +A
Sbjct: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC---------------RA 77
Query: 179 QQGPSAQGKPTYFREEEEEIHSPTLL 204
++GPSA P R +E P L
Sbjct: 78 RRGPSAHLAPGTQRTYMQETRLPRAL 103
>gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo
sapiens]
Length = 160
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 119 GSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 178
GS R+ + R S+ RC + GG + C P P+ C +A
Sbjct: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC---------------RA 77
Query: 179 QQGPSAQGKPTYFREEEEEIHSPTLL 204
++GPSA P R +E P L
Sbjct: 78 RRGPSAHLAPGTQRTYMQETRLPRAL 103
>gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]
Length = 949
Score = 31.6 bits (70), Expect = 0.51
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 132 RRSKGDRCYNCGGLDHHAKECKLP 155
++S CYNCG H A++CK P
Sbjct: 901 KKSGNLSCYNCGATGHRAQDCKQP 924
>gi|4505011 lysyl oxidase-like 2 precursor [Homo sapiens]
Length = 774
Score = 30.8 bits (68), Expect = 0.86
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 81 MEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQKRRSKGDRCY 140
MEG+ +KEG+ + K S V G +F ER K + S+ + Y
Sbjct: 202 MEGYVEVKEGKTWKQICDKHWTAKNSRVVCG---MFGFPGERTYNTKVYKMFASRRKQRY 258
Query: 141 -----NCGGLDHHAKECKLPPQ----PKKCHFCQSISHMVASC 174
+C G + H CKL PQ P K C++ V SC
Sbjct: 259 WPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLPAVVSC 301
Score = 28.1 bits (61), Expect = 5.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 157 QPKKCHFCQSISHMVASCPLKAQQGPSAQGKPTYFREEEEEIHSP 201
+P H C ++ + PL Q S P YF++ E H P
Sbjct: 3 RPLCSHLCSCLAMLALLSPLSLAQYDSWPHYPEYFQQPAPEYHQP 47
>gi|19743801 zinc finger protein 274 isoform c [Homo sapiens]
Length = 653
Score = 30.8 bits (68), Expect = 0.86
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 67 DPPVDVFVHQS--KLHMEGF--RSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE- 121
D V H S K+H + + KEG TF +S K + IR+ G C SE
Sbjct: 454 DSQVKSMKHNSRVKIHQKSCERQKAKEGNGCRKTFSRSTKQITFIRI-HKGSQVCRCSEC 512
Query: 122 ----RRPKGKSMQKRRSKGDRCYNC 142
R P+ S+ K+ G+R Y C
Sbjct: 513 GKIFRNPRYFSVHKKIHTGERPYVC 537
>gi|7706507 zinc finger protein 274 isoform a [Homo sapiens]
Length = 621
Score = 30.8 bits (68), Expect = 0.86
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 67 DPPVDVFVHQS--KLHMEGF--RSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE- 121
D V H S K+H + + KEG TF +S K + IR+ G C SE
Sbjct: 422 DSQVKSMKHNSRVKIHQKSCERQKAKEGNGCRKTFSRSTKQITFIRI-HKGSQVCRCSEC 480
Query: 122 ----RRPKGKSMQKRRSKGDRCYNC 142
R P+ S+ K+ G+R Y C
Sbjct: 481 GKIFRNPRYFSVHKKIHTGERPYVC 505
>gi|19743798 zinc finger protein 274 isoform b [Homo sapiens]
Length = 548
Score = 30.8 bits (68), Expect = 0.86
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 67 DPPVDVFVHQS--KLHMEGF--RSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE- 121
D V H S K+H + + KEG TF +S K + IR+ G C SE
Sbjct: 349 DSQVKSMKHNSRVKIHQKSCERQKAKEGNGCRKTFSRSTKQITFIRI-HKGSQVCRCSEC 407
Query: 122 ----RRPKGKSMQKRRSKGDRCYNC 142
R P+ S+ K+ G+R Y C
Sbjct: 408 GKIFRNPRYFSVHKKIHTGERPYVC 432
>gi|223633947 zinc finger, CCHC domain containing 24 [Homo sapiens]
Length = 241
Score = 30.0 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 150 KECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSA---QGKPTYFRE 193
K K PP CH C + H + CP +G QGK F E
Sbjct: 123 KPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGE 169
>gi|38044290 zinc finger, CCHC domain containing 8 [Homo sapiens]
Length = 707
Score = 30.0 bits (66), Expect = 1.5
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 125 KGKSMQ-KRRSKGDRCYNCGGLDHHAKECKLP 155
+G+ +Q K + C+NCG +H K+C +P
Sbjct: 214 EGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMP 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,609,414
Number of Sequences: 37866
Number of extensions: 451452
Number of successful extensions: 1448
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 96
length of query: 209
length of database: 18,247,518
effective HSP length: 98
effective length of query: 111
effective length of database: 14,536,650
effective search space: 1613568150
effective search space used: 1613568150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.