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Search of human proteins with 13375682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13375682 G protein-coupled receptor 172A [Homo sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13375682 G protein-coupled receptor 172A [Homo sapiens] 887 0.0
gi|157388953 G protein-coupled receptor 172B [Homo sapiens] 758 0.0
gi|157388951 G protein-coupled receptor 172B [Homo sapiens] 758 0.0
gi|156564359 hypothetical protein LOC113278 [Homo sapiens] 309 4e-84
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 36 0.062
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 36 0.081
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 35 0.11
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 35 0.14
gi|217416366 major facilitator superfamily domain containing 9 [... 34 0.23
gi|46397390 pogo transposable element with ZNF domain isoform 1 ... 34 0.31
gi|46397394 pogo transposable element with ZNF domain isoform 2 ... 34 0.31
gi|13376339 plasticity-related protein 2 [Homo sapiens] 33 0.40
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 33 0.40
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 33 0.52
gi|18860857 menin isoform 1 [Homo sapiens] 33 0.52
gi|18860855 menin isoform 1 [Homo sapiens] 33 0.52
gi|18860851 menin isoform 1 [Homo sapiens] 33 0.52
gi|18860849 menin isoform 1 [Homo sapiens] 33 0.52
gi|18860853 menin isoform 1 [Homo sapiens] 33 0.52
gi|18860839 menin isoform 1 [Homo sapiens] 33 0.52
gi|18860847 menin isoform 2 [Homo sapiens] 33 0.52
gi|153792074 proline rich 12 [Homo sapiens] 33 0.52
gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo sap... 33 0.68
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 33 0.68
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 33 0.68
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 33 0.68
gi|160707881 formin 2 [Homo sapiens] 33 0.68
gi|54860079 nadrin isoform 1 [Homo sapiens] 33 0.68
gi|54860105 nadrin isoform 2 [Homo sapiens] 33 0.68
gi|51972258 ets variant 3-like [Homo sapiens] 33 0.68
>gi|13375682 G protein-coupled receptor 172A [Homo sapiens]
Length = 445
Score = 887 bits (2293), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 60
MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL
Sbjct: 1 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 60
Query: 61 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV 120
GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV
Sbjct: 61 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV 120
Query: 121 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT 180
LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT
Sbjct: 121 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT 180
Query: 181 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA 240
PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA
Sbjct: 181 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA 240
Query: 241 EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF 300
EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF
Sbjct: 241 EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF 300
Query: 301 SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS 360
SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS
Sbjct: 301 SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS 360
Query: 361 PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA 420
PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA
Sbjct: 361 PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA 420
Query: 421 VAMFPPTSIYHVFHSRKDCADPCDS 445
VAMFPPTSIYHVFHSRKDCADPCDS
Sbjct: 421 VAMFPPTSIYHVFHSRKDCADPCDS 445
>gi|157388953 G protein-coupled receptor 172B [Homo sapiens]
Length = 448
Score = 758 bits (1957), Expect = 0.0
Identities = 386/446 (86%), Positives = 406/446 (91%), Gaps = 3/446 (0%)
Query: 1 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 60
MAAPT R VLTHLLVALFGMGSWAAVNGIWVELPVVVK+LPEGWSLPSY+SV+VALGNL
Sbjct: 1 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL 60
Query: 61 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV 120
GLLVVTLWR+LAPGK EQVPI+VVQVL +VGTALLA LWHHVAPVAGQLHSVAFL LA V
Sbjct: 61 GLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV 120
Query: 121 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT 180
LA+ACC SNVTFLPFLSHLPP FLRSFFLGQGLSALLPCVLALVQGVGRLECPPAP NGT
Sbjct: 121 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT 180
Query: 181 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA 240
GPPLDF ERFPASTFFWALTALLV SAAAF+GLLLLLP PSV TG G LQ+G+PGA
Sbjct: 181 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA 240
Query: 241 EE---EVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAV 297
EE E EE+ PLQEPPSQAAGT PGPDP+A+QL SA A LLGL+A T+A+TNGVLP+V
Sbjct: 241 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSV 300
Query: 298 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALA 357
QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGL GLSLLG+ G YLMALA
Sbjct: 301 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA 360
Query: 358 VLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 417
+LSPCPPLVGT+AGVVLVVLSWVLCL VFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL
Sbjct: 361 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 420
Query: 418 LGAVAMFPPTSIYHVFHSRKDCADPC 443
LGA AMFPPTSIYHVF SRKDC DPC
Sbjct: 421 LGAGAMFPPTSIYHVFQSRKDCVDPC 446
>gi|157388951 G protein-coupled receptor 172B [Homo sapiens]
Length = 448
Score = 758 bits (1957), Expect = 0.0
Identities = 386/446 (86%), Positives = 406/446 (91%), Gaps = 3/446 (0%)
Query: 1 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 60
MAAPT R VLTHLLVALFGMGSWAAVNGIWVELPVVVK+LPEGWSLPSY+SV+VALGNL
Sbjct: 1 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL 60
Query: 61 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV 120
GLLVVTLWR+LAPGK EQVPI+VVQVL +VGTALLA LWHHVAPVAGQLHSVAFL LA V
Sbjct: 61 GLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV 120
Query: 121 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT 180
LA+ACC SNVTFLPFLSHLPP FLRSFFLGQGLSALLPCVLALVQGVGRLECPPAP NGT
Sbjct: 121 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT 180
Query: 181 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA 240
GPPLDF ERFPASTFFWALTALLV SAAAF+GLLLLLP PSV TG G LQ+G+PGA
Sbjct: 181 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA 240
Query: 241 EE---EVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAV 297
EE E EE+ PLQEPPSQAAGT PGPDP+A+QL SA A LLGL+A T+A+TNGVLP+V
Sbjct: 241 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSV 300
Query: 298 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALA 357
QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGL GLSLLG+ G YLMALA
Sbjct: 301 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA 360
Query: 358 VLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 417
+LSPCPPLVGT+AGVVLVVLSWVLCL VFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL
Sbjct: 361 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL 420
Query: 418 LGAVAMFPPTSIYHVFHSRKDCADPC 443
LGA AMFPPTSIYHVF SRKDC DPC
Sbjct: 421 LGAGAMFPPTSIYHVFQSRKDCVDPC 446
>gi|156564359 hypothetical protein LOC113278 [Homo sapiens]
Length = 469
Score = 309 bits (791), Expect = 4e-84
Identities = 195/473 (41%), Positives = 253/473 (53%), Gaps = 49/473 (10%)
Query: 11 LTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLVVTLWRR 70
L HLLV +FGMGSW +NG+WVELP++V ELPEGW LPSY++V++ L N+G L+VTL
Sbjct: 4 LMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHH 63
Query: 71 LAPGKDEQVPIRVVQV-LGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCASN 129
P +VPI + +G V + A LW+ + V HS+AFL L F LAL C S+
Sbjct: 64 FRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSS 123
Query: 130 VTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLEC----------------- 172
VTFLPF+S LP +L +FF+G+GLS LLP ++AL QG G C
Sbjct: 124 VTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTR 183
Query: 173 --------PPAPINGTPG--PPLDFLE------RFPASTFFWALTALLVASAAAFQGLLL 216
P A ++ PG PL LE F FF L+ ++ AF
Sbjct: 184 ETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAF----F 239
Query: 217 LLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARS 276
+L P + L + + P +E AGT + Y A
Sbjct: 240 VLQRQPRCWEASVEDLLN-----DQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAP 294
Query: 277 AC------LLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAANPLACFLAMG 330
C + L+A NALTNG+LP+VQ++SCL YG +AYHLA L ANPLA ++M
Sbjct: 295 CCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMF 354
Query: 331 VLCRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVK 390
+ RSL LG LS+LG GGY MA+AV+SPCP L G G VL+V SWVL G SYVK
Sbjct: 355 LPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVK 414
Query: 391 VAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCADPC 443
V +L R ALL G A+Q+GSLLGA+ MFP ++ +F S C C
Sbjct: 415 VMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHC 467
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 36.2 bits (82), Expect = 0.062
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTP 262
PP P P G G G GAPG++EE EE ++ P A P
Sbjct: 74 PPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 35.8 bits (81), Expect = 0.081
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 218 LPPPPSVPTGELGSGLQVGAPGAEEEVEESS-PLQEP-----PSQAAGTTPG 263
+PPPP++P G GA AE+ ++++S PL++P S A TPG
Sbjct: 1254 VPPPPTLPAAVTGPDFPAGAHRAEDSIQQASEPLKDPLLHSHSSPAGQRTPG 1305
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 35.4 bits (80), Expect = 0.11
Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 35/191 (18%)
Query: 113 AFLALAFVLALACCASNVTFLPFLSHLPPRFLRSF-FLGQGLSALLPC-VLALVQG---- 166
A +A+A+++ +S+ + F+ P +F FLGQ L +LA +QG
Sbjct: 254 ATIAIAYIMKTMGMSSDDAYR-FVKDRRPSISPNFNFLGQLLEYERSLKLLAALQGDPGT 312
Query: 167 -VGRLECPPAPINGTPGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVP 225
G E PP+P G P P R P T A T +AAA +G L PP+ P
Sbjct: 313 PSGTPEPPPSPAAGAPLP------RLPPPTSESAATG----NAAAREGGLSAGGEPPAPP 362
Query: 226 TGELGSGLQVGAPG---AEEEVEESSPLQEP--------------PSQAAGTTPGPDPKA 268
T S LQ G G + + +++++ L+ P PG PK
Sbjct: 363 TPPATSALQQGLRGLHLSSDRLQDTNRLKRSFSLDIKSAYAPSRRPDGPGPPDPGEAPKL 422
Query: 269 YQLLSARSACL 279
+L S A L
Sbjct: 423 CKLDSPSGAAL 433
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 35.0 bits (79), Expect = 0.14
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 173 PPAPINGTPGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGE---- 228
PPAP++ PGPP E + F W TA + AA Q L P P G+
Sbjct: 1853 PPAPLSPAPGPPTPAPESHTPAPFSWG-TAEYDSVVAAVQEGAAELEGGPYSPLGKDYRK 1911
Query: 229 -LGSGLQVGAPGAEEEVEESSPLQEPPSQAAGT------------TPGPDPKAYQ 270
G + G A ++ SS + E A T TP PD +++Q
Sbjct: 1912 AEGEREEEGRAEAPDKSSHSSKVPEASKSHATTEPEQTEPEQREPTPYPDERSFQ 1966
>gi|217416366 major facilitator superfamily domain containing 9
[Homo sapiens]
Length = 474
Score = 34.3 bits (77), Expect = 0.23
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 21 MGSWAAVNGIWVEL-PVV---VKELPEGWSLPSYVSVLVALGNLGLLVVTLWRRLAPGKD 76
+G + +G+ L PVV + EL +G+ L +++ LV + N GL+ WR PG
Sbjct: 169 IGHFNTASGVGFILGPVVGGYLTELEDGFYLTAFICFLVFILNAGLVWFFPWREAKPGST 228
Query: 77 EQ-VPIRVVQVL 87
E+ +P+R VL
Sbjct: 229 EKGLPLRKTHVL 240
>gi|46397390 pogo transposable element with ZNF domain isoform 1
[Homo sapiens]
Length = 1410
Score = 33.9 bits (76), Expect = 0.31
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 220 PPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEP-PSQAAGTTPGPDPKAYQLLS 273
PPPS PT + + GA AE E E +PL PS A+ TP P P Q L+
Sbjct: 875 PPPSFPTNKAATVKSAGATPAEPE-ELLTPLAPALPSPASTATPPPTPTHPQALA 928
>gi|46397394 pogo transposable element with ZNF domain isoform 2
[Homo sapiens]
Length = 1357
Score = 33.9 bits (76), Expect = 0.31
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 220 PPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEP-PSQAAGTTPGPDPKAYQLLS 273
PPPS PT + + GA AE E E +PL PS A+ TP P P Q L+
Sbjct: 822 PPPSFPTNKAATVKSAGATPAEPE-ELLTPLAPALPSPASTATPPPTPTHPQALA 875
>gi|13376339 plasticity-related protein 2 [Homo sapiens]
Length = 746
Score = 33.5 bits (75), Expect = 0.40
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 117 LAFVLALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAP 176
L F A+A +T + P F +G G++A L C VG + PPA
Sbjct: 265 LVFAFAIAAGVCGLTQITQYRSHPVDVYAGFLIGAGIAAYLAC-----HAVGNFQAPPAE 319
Query: 177 INGTPGPPLDFL 188
P P D L
Sbjct: 320 KPAAPAPAKDAL 331
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 33.5 bits (75), Expect = 0.40
Identities = 51/207 (24%), Positives = 71/207 (34%), Gaps = 31/207 (14%)
Query: 79 VPIRVVQVLGMVGTALLASLWHHVAPV------------AGQLHSVAFLALAFVLALACC 126
+PI + G ALL S+ +APV +G S + L L A +
Sbjct: 1457 IPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSLS 1516
Query: 127 ASNVTFLPFL-----SHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGTP 181
+S P L SH+P GL++ + + V P P P
Sbjct: 1517 SSQTPGHPLLLAPTSSHVP-----------GLNSTVAPACSPVLVPASALASPFPSAPNP 1565
Query: 182 GPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGEL--GSGLQVGAPG 239
P L PAS+ AL L AA +L P PP P L G
Sbjct: 1566 APAQASLLA-PASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLAS 1624
Query: 240 AEEEVEESSPLQEPPSQAAGTTPGPDP 266
++ V +P P + A +P P P
Sbjct: 1625 SQTPVPVMAPSSTPGTSLASASPVPAP 1651
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.1 bits (74), Expect = 0.52
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 218 LPPPPS------------VPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
LPPPPS P GEL GL G P + E P EPPS AG + G
Sbjct: 959 LPPPPSSRSPSSSPGQLGQPPGELSLGLATG-PLSTPETPPRQP--EPPSLVAGASGGAS 1015
Query: 266 PKAY 269
P +
Sbjct: 1016 PVGF 1019
>gi|18860857 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 497 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 535
>gi|18860855 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 497 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 535
>gi|18860851 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 497 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 535
>gi|18860849 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 497 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 535
>gi|18860853 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 497 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 535
>gi|18860839 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 497 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 535
>gi|18860847 menin isoform 2 [Homo sapiens]
Length = 610
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 219 PPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPD 265
PPPP P + G G GA S P ++PP AGT GP+
Sbjct: 492 PPPPKKPALDKGLGTGQGAV--------SGPPRKPPGTVAGTARGPE 530
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.1 bits (74), Expect = 0.52
Identities = 35/102 (34%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 173 PPAPINGTPGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSG 232
P A NGTP PPL LE P T A T PPPP P L S
Sbjct: 1440 PSANSNGTPEPPL--LEEKPPPTPPPAPTPQPQP------------PPPPPPPQPALPSP 1485
Query: 233 LQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSA 274
+ AP PL PP A + P P P A L+A
Sbjct: 1486 PPLVAPTPSS--PPPPPLPPPPPPAMPSPPPPPPPAAAPLAA 1525
>gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo sapiens]
Length = 1121
Score = 32.7 bits (73), Expect = 0.68
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 27 VNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLVVTLWRR----LAPGKDE----- 77
+ GI V L ++K +P LP V + +G L + W R L P K +
Sbjct: 937 LTGISVFLAPILKCIP----LPVLYGVFLYMGVASLNGIQFWERCKLFLMPAKHQPDHAF 992
Query: 78 --QVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLAL 123
VP+R + + +V LA LW + VA + V L L V L
Sbjct: 993 LRHVPLRRIHLFTLVQILCLAVLWILKSTVAAIIFPVMILGLIIVRRL 1040
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 32.7 bits (73), Expect = 0.68
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 180 TPGPPLDFLERFPASTFFWALTALLVASAAAF-----QGLLLLLPPPPSVPTGELGSGLQ 234
TP P DF ++ T L + S+ G LL+PPPP P
Sbjct: 96 TPSVPDDFADKEVTGTSSLVNGNLRLYSSVGDLRPGQYGQDLLIPPPPPGP--------- 146
Query: 235 VGAPGAEEEVEE---SSPLQEPPSQAAGTTPGPDP 266
APG +++ E SPL PPS T P P P
Sbjct: 147 --APGPPQDISEPPGGSPLPSPPS----TAPPPPP 175
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 32.7 bits (73), Expect = 0.68
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 180 TPGPPLDFLERFPASTFFWALTALLVASAAAF-----QGLLLLLPPPPSVPTGELGSGLQ 234
TP P DF ++ T L + S+ G LL+PPPP P
Sbjct: 96 TPSVPDDFADKEVTGTSSLVNGNLRLYSSVGDLRPGQYGQDLLIPPPPPGP--------- 146
Query: 235 VGAPGAEEEVEE---SSPLQEPPSQAAGTTPGPDP 266
APG +++ E SPL PPS T P P P
Sbjct: 147 --APGPPQDISEPPGGSPLPSPPS----TAPPPPP 175
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 32.7 bits (73), Expect = 0.68
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 180 TPGPPLDFLERFPASTFFWALTALLVASAAAF-----QGLLLLLPPPPSVPTGELGSGLQ 234
TP P DF ++ T L + S+ G LL+PPPP P
Sbjct: 96 TPSVPDDFADKEVTGTSSLVNGNLRLYSSVGDLRPGQYGQDLLIPPPPPGP--------- 146
Query: 235 VGAPGAEEEVEE---SSPLQEPPSQAAGTTPGPDP 266
APG +++ E SPL PPS T P P P
Sbjct: 147 --APGPPQDISEPPGGSPLPSPPS----TAPPPPP 175
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 32.7 bits (73), Expect = 0.68
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 26/110 (23%)
Query: 157 LPCV--LALVQGVGRLECPPAPINGTPGPPLDFLERFPASTFFWALTALLVASAAAFQGL 214
LPC + + G+G + PP P+ G P L + + QG
Sbjct: 861 LPCTESSSSMPGLGMVPPPPPPLPGMTVP---------------TLPSTAIPQPPPLQGT 905
Query: 215 LLLLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGP 264
+L PPPP +P G+G+ P + + L PP AG P P
Sbjct: 906 EMLPPPPPPLP----GAGIPPPPP-----LPGAGILPLPPLPGAGIPPPP 946
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 32.7 bits (73), Expect = 0.68
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 220 PPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSA 274
PPP P G+ SG P + SP PP+Q G PG P A LSA
Sbjct: 646 PPPGHPGGQSSSGTSQHPPSLSPKPPTRSP--SPPTQHTGQPPG-QPSAPSQLSA 697
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 32.7 bits (73), Expect = 0.68
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 220 PPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSA 274
PPP P G+ SG P + SP PP+Q G PG P A LSA
Sbjct: 568 PPPGHPGGQSSSGTSQHPPSLSPKPPTRSP--SPPTQHTGQPPG-QPSAPSQLSA 619
>gi|51972258 ets variant 3-like [Homo sapiens]
Length = 361
Score = 32.7 bits (73), Expect = 0.68
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 221 PPSVPTGELGSGLQVGAPGAEEEVEESSPLQEP--PSQAAGTTPGPDPKAYQLLSARSAC 278
P VP G L + VE+ + Q P P + +G G Y+L SA C
Sbjct: 152 PALVPVGVQSELLHSMLFAHQAMVEQLTGQQTPRGPPETSGDKKGSSSSVYRLGSAPGPC 211
Query: 279 LLGLLAATNALTNGVLPAVQSFS 301
LGL ++ G LP V SF+
Sbjct: 212 RLGLCCHLGSV-QGELPGVASFT 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,258,724
Number of Sequences: 37866
Number of extensions: 1064734
Number of successful extensions: 5271
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 5041
Number of HSP's gapped (non-prelim): 349
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.