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Search of human proteins with 13324682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13324682 family 3, member A protein [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13324682 family 3, member A protein [Homo sapiens] 463 e-131
gi|20270363 family with sequence similarity 3, member D [Homo sa... 254 6e-68
gi|91807125 family with sequence similarity 3, member C precurso... 243 8e-65
gi|7661714 family with sequence similarity 3, member C precursor... 243 8e-65
gi|46255030 family with sequence similarity 3, member B isoform ... 140 7e-34
gi|46255032 family with sequence similarity 3, member B isoform ... 139 3e-33
gi|210147552 O-linked mannose beta1,2-N-acetylglucosaminyltransf... 52 4e-07
gi|38638698 KIAA1199 [Homo sapiens] 51 9e-07
gi|209447096 transmembrane protein 2 isoform b [Homo sapiens] 42 3e-04
gi|7019555 transmembrane protein 2 isoform a [Homo sapiens] 42 3e-04
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 2.3
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 2.3
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 2.3
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 29 3.9
gi|21314675 kelch domain containing 4 [Homo sapiens] 29 3.9
gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 28 5.0
gi|189571643 sulfatase 1 [Homo sapiens] 28 6.6
gi|189571641 sulfatase 1 [Homo sapiens] 28 6.6
gi|189571638 sulfatase 1 [Homo sapiens] 28 6.6
gi|189571636 sulfatase 1 [Homo sapiens] 28 6.6
gi|4585710 ADAM metallopeptidase domain 11 preproprotein [Homo s... 28 6.6
gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo ... 28 8.6
gi|21389623 prominin 2 [Homo sapiens] 28 8.6
>gi|13324682 family 3, member A protein [Homo sapiens]
Length = 230
Score = 463 bits (1191), Expect = e-131
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG 60
MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG
Sbjct: 1 MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG 60
Query: 61 LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEA 120
LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEA
Sbjct: 61 LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEA 120
Query: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR 180
RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR
Sbjct: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR 180
Query: 181 DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRRSTAS 230
DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRRSTAS
Sbjct: 181 DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRRSTAS 230
>gi|20270363 family with sequence similarity 3, member D [Homo
sapiens]
Length = 224
Score = 254 bits (648), Expect = 6e-68
Identities = 121/224 (54%), Positives = 164/224 (73%), Gaps = 4/224 (1%)
Query: 1 MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG 60
MR++G LR++ L+ ++ TW+ + + + L SP + + +KYKCG
Sbjct: 1 MRVSGVLRLLALIFAIVTTWMFIRSYMSFSMKTIRLPRWLAASPTKEI----QVKKYKCG 56
Query: 61 LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEA 120
L +PCP + AF++ SGAANV+GP +C ED+M+MS VK+NVGRGLNIALVNG +G ++
Sbjct: 57 LIKPCPANYFAFKICSGAANVVGPTMCFEDRMIMSPVKNNVGRGLNIALVNGTTGAVLGQ 116
Query: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR 180
+AFDM++GDV L+KF++ + G LV VASYDDP TKMN+E+RKLFS+LGS AK+L FR
Sbjct: 117 KAFDMYSGDVMHLVKFLKEIPGGALVLVASYDDPGTKMNDESRKLFSDLGSSYAKQLGFR 176
Query: 181 DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIP 224
DSWVF+GAK ++ KSPFEQ +KNS +NKYEG PE LEMEGC+P
Sbjct: 177 DSWVFIGAKDLRGKSPFEQFLKNSPDTNKYEGWPELLEMEGCMP 220
>gi|91807125 family with sequence similarity 3, member C precursor
[Homo sapiens]
Length = 227
Score = 243 bits (621), Expect = 8e-65
Identities = 118/231 (51%), Positives = 166/231 (71%), Gaps = 11/231 (4%)
Query: 1 MRLAGPLRIVVLVVSVGVTWIVVSILL-----GGPGSGFPRIQQLFTSPESSVTAAPRAR 55
MR+AG ++VV V +T+ V+S + G+ F R L T+ S T PR
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFAR-SALDTAARS--TKPPR-- 55
Query: 56 KYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSG 115
YKCG+ + CPE+H AF++ SGAANV+GPKICLED +LMS VK+NVGRG+N+AL NG +G
Sbjct: 56 -YKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTG 114
Query: 116 ELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAK 175
E+++ + FDMW GDV ++F++ + +GT+V + +YDD ATK+N+E R+L ++LGS +
Sbjct: 115 EVLDTKYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSIT 174
Query: 176 ELAFRDSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRR 226
L FRD+WVF G KG++ KSPFEQH+KN+K +NKYEG PE +EMEGCIP++
Sbjct: 175 NLGFRDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>gi|7661714 family with sequence similarity 3, member C precursor
[Homo sapiens]
Length = 227
Score = 243 bits (621), Expect = 8e-65
Identities = 118/231 (51%), Positives = 166/231 (71%), Gaps = 11/231 (4%)
Query: 1 MRLAGPLRIVVLVVSVGVTWIVVSILL-----GGPGSGFPRIQQLFTSPESSVTAAPRAR 55
MR+AG ++VV V +T+ V+S + G+ F R L T+ S T PR
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFAR-SALDTAARS--TKPPR-- 55
Query: 56 KYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSG 115
YKCG+ + CPE+H AF++ SGAANV+GPKICLED +LMS VK+NVGRG+N+AL NG +G
Sbjct: 56 -YKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTG 114
Query: 116 ELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAK 175
E+++ + FDMW GDV ++F++ + +GT+V + +YDD ATK+N+E R+L ++LGS +
Sbjct: 115 EVLDTKYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSIT 174
Query: 176 ELAFRDSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRR 226
L FRD+WVF G KG++ KSPFEQH+KN+K +NKYEG PE +EMEGCIP++
Sbjct: 175 NLGFRDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>gi|46255030 family with sequence similarity 3, member B isoform a
[Homo sapiens]
Length = 235
Score = 140 bits (354), Expect = 7e-34
Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 10/231 (4%)
Query: 3 LAGPLRIVVLVVSVGVT-----WIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKY 57
LAG L VV VV + +++ ++ P S + + E V AP ++
Sbjct: 4 LAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSS--AAYSIRSIGERPVLKAPVPKRQ 61
Query: 58 KCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGEL 117
KC PCP + A+R++SG KIC ED +LM NV RG+NIA+VN V+G +
Sbjct: 62 KCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGNV 121
Query: 118 IEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKE 176
R FDM+ GD + KFI+ +L+F+ +YDD +T++N + + LGS+ +
Sbjct: 122 TATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIRN 181
Query: 177 LAFRDSWVFVGAKGVQNKSPFEQHVKN--SKHSNKYEGCPEALEMEGCIPR 225
+ FR SWVF+ AKG++ S ++ N +N+Y G P +++EGCIP+
Sbjct: 182 MKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPK 232
>gi|46255032 family with sequence similarity 3, member B isoform b
[Homo sapiens]
Length = 187
Score = 139 bits (349), Expect = 3e-33
Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 48 VTAAPRARKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNI 107
+ AP ++ KC PCP + A+R++SG KIC ED +LM NV RG+NI
Sbjct: 4 LAGAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINI 63
Query: 108 ALVNGVSGELIEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLF 166
A+VN V+G + R FDM+ GD + KFI+ +L+F+ +YDD +T++N + +
Sbjct: 64 AIVNYVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAI 123
Query: 167 SELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKN--SKHSNKYEGCPEALEMEGCIP 224
LGS+ + + FR SWVF+ AKG++ S ++ N +N+Y G P +++EGCIP
Sbjct: 124 EALGSKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIP 183
Query: 225 R 225
+
Sbjct: 184 K 184
>gi|210147552 O-linked mannose
beta1,2-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 660
Score = 52.0 bits (123), Expect = 4e-07
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 102 GRGLNIALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 160
GRG+++ ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 161 ETRKLFSELGSRNAKELAFRDSWVFVGAKG 190
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>gi|38638698 KIAA1199 [Homo sapiens]
Length = 1361
Score = 50.8 bits (120), Expect = 9e-07
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 103 RGLNIALVNGVSGELIEARAFDMWAG--DVNDLLKFIRPLHEGTLVFVASYDDPATKMNE 160
RG+ + +++ SG +I + FD + + L++++ + +G ++ VA D+ + +++
Sbjct: 187 RGVIVHVIDPKSGTVIHSDRFDTYRSKKESERLVQYLNAVPDGRILSVAVNDEGSRNLDD 246
Query: 161 ETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKNSKH 206
RK ++LGS++ L FR W F+ KG S E H++ H
Sbjct: 247 MARKAMTKLGSKHFLHLGFRHPWSFLTVKG-NPSSSVEDHIEYHGH 291
>gi|209447096 transmembrane protein 2 isoform b [Homo sapiens]
Length = 1320
Score = 42.4 bits (98), Expect = 3e-04
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 103 RGLNIALVNGVSGELIEARAFDM--WAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNE 160
RGLN+ +++ + +++E+ FD + + L +F+R G +V +A D A + +
Sbjct: 265 RGLNVRVIDQDTAKILESERFDTHEYRNESRRLQEFLRFQDPGRIVAIAVGDSAAKSLLQ 324
Query: 161 ETRKLFSE-LGSRNAKELAFRDSWVFVG 187
T ++ E LGS + L +R +W VG
Sbjct: 325 GTIQMIQERLGSELIQGLGYRQAWALVG 352
>gi|7019555 transmembrane protein 2 isoform a [Homo sapiens]
Length = 1383
Score = 42.4 bits (98), Expect = 3e-04
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 103 RGLNIALVNGVSGELIEARAFDM--WAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNE 160
RGLN+ +++ + +++E+ FD + + L +F+R G +V +A D A + +
Sbjct: 265 RGLNVRVIDQDTAKILESERFDTHEYRNESRRLQEFLRFQDPGRIVAIAVGDSAAKSLLQ 324
Query: 161 ETRKLFSE-LGSRNAKELAFRDSWVFVG 187
T ++ E LGS + L +R +W VG
Sbjct: 325 GTIQMIQERLGSELIQGLGYRQAWALVG 352
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 190 GVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRRSTAS 230
G Q K+ F+ H+K KH+ KY+ E G + S AS
Sbjct: 850 GTQLKANFQLHLKTDKHAQKYQLAAHLREGGGAMGTPSPAS 890
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 190 GVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRRSTAS 230
G Q K+ F+ H+K KH+ KY+ E G + S AS
Sbjct: 766 GTQLKANFQLHLKTDKHAQKYQLAAHLREGGGAMGTPSPAS 806
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 190 GVQNKSPFEQHVKNSKHSNKYEGCPEALEMEGCIPRRSTAS 230
G Q K+ F+ H+K KH+ KY+ E G + S AS
Sbjct: 766 GTQLKANFQLHLKTDKHAQKYQLAAHLREGGGAMGTPSPAS 806
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 28.9 bits (63), Expect = 3.9
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 23 VSILLGGPGSGFPRIQQLFTSPESSVTAA--------PRARKYKCGLPQPCPEEHLAFRV 74
+S L GGPG+G PRI ++PES V A P + G+P+ LA
Sbjct: 170 LSPLPGGPGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGG 229
Query: 75 VSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEARAFDMWAGDVNDLL 134
G + + P++ +M++ SV + + R G+ AG+V LL
Sbjct: 230 TGGGPDRLEPEMV---RMVVESV-ERIFRSF-------PRGD----------AGEVTSLL 268
Query: 135 KFIRPLHEGTLVFVASYDDPATKMNEETRK 164
K + L ++ + DD ++ EE RK
Sbjct: 269 KLNKKLAR-SVGHIFEMDDNDSQKEEEIRK 297
>gi|21314675 kelch domain containing 4 [Homo sapiens]
Length = 520
Score = 28.9 bits (63), Expect = 3.9
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 5 GPLRIVVLVVSVGVTWIVVSILLGGPGS-GFPRIQQLFTSPESSVTAAPRARKYKCGLPQ 63
GP+++V VV+ T + + +L PGS G PR + + E+ A P
Sbjct: 380 GPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLEEAGSPA-----------PG 428
Query: 64 PCPEEHLAFRVVSGAANVIG 83
PCP + V G V G
Sbjct: 429 PCPRSNAMLAVKHGVLYVYG 448
>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
Length = 630
Score = 28.5 bits (62), Expect = 5.0
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 135 KFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNK 194
K RP + T V DD + + KL E+ + K+ + + G+ G +N
Sbjct: 105 KIARPKQKETDGKVQKDDDQLENIQKSQNKLLREVAVK--KKTQAKKNGSDCGSLGKKNN 162
Query: 195 SPFEQHVKNSKHSNKYEGCPEALEM--------EGCIPRRSTAS 230
++HV + K K+E C + L+ C+ R+S A+
Sbjct: 163 L-HKKHVPSKKRLLKFESCGKILKQNLDLPDHSRNCVKRKSDAA 205
>gi|189571643 sulfatase 1 [Homo sapiens]
Length = 871
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 144 TLVFVASYDDPATKMNEETRKLFS--ELGSR---NAKELAFRDSWVFVGAKGVQNKSPFE 198
T++ +A D P + KL + G+R N K +RD+++ K ++ K
Sbjct: 367 TILDIAGLDTPPDVDGKSVLKLLDPEKPGNRFRTNKKAKIWRDTFLVERGKFLRKKEESS 426
Query: 199 QHVKNSKHSNKYEGCPE 215
++++ S H KYE E
Sbjct: 427 KNIQQSNHLPKYERVKE 443
>gi|189571641 sulfatase 1 [Homo sapiens]
Length = 871
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 144 TLVFVASYDDPATKMNEETRKLFS--ELGSR---NAKELAFRDSWVFVGAKGVQNKSPFE 198
T++ +A D P + KL + G+R N K +RD+++ K ++ K
Sbjct: 367 TILDIAGLDTPPDVDGKSVLKLLDPEKPGNRFRTNKKAKIWRDTFLVERGKFLRKKEESS 426
Query: 199 QHVKNSKHSNKYEGCPE 215
++++ S H KYE E
Sbjct: 427 KNIQQSNHLPKYERVKE 443
>gi|189571638 sulfatase 1 [Homo sapiens]
Length = 871
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 144 TLVFVASYDDPATKMNEETRKLFS--ELGSR---NAKELAFRDSWVFVGAKGVQNKSPFE 198
T++ +A D P + KL + G+R N K +RD+++ K ++ K
Sbjct: 367 TILDIAGLDTPPDVDGKSVLKLLDPEKPGNRFRTNKKAKIWRDTFLVERGKFLRKKEESS 426
Query: 199 QHVKNSKHSNKYEGCPE 215
++++ S H KYE E
Sbjct: 427 KNIQQSNHLPKYERVKE 443
>gi|189571636 sulfatase 1 [Homo sapiens]
Length = 871
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 144 TLVFVASYDDPATKMNEETRKLFS--ELGSR---NAKELAFRDSWVFVGAKGVQNKSPFE 198
T++ +A D P + KL + G+R N K +RD+++ K ++ K
Sbjct: 367 TILDIAGLDTPPDVDGKSVLKLLDPEKPGNRFRTNKKAKIWRDTFLVERGKFLRKKEESS 426
Query: 199 QHVKNSKHSNKYEGCPE 215
++++ S H KYE E
Sbjct: 427 KNIQQSNHLPKYERVKE 443
>gi|4585710 ADAM metallopeptidase domain 11 preproprotein [Homo
sapiens]
Length = 769
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 2 RLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQ 39
R GP +++ S+ +V +I+LGG G GF I++
Sbjct: 726 RYKGPSGTNIIIGSIAGAVLVAAIVLGGTGWGFKNIRR 763
>gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo
sapiens]
Length = 521
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 46 SSVTAAPRARKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGL 105
S V PR + + + C E +LA G ++G + + D++++S+ + N R L
Sbjct: 100 SKVLLRPRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMN--RVL 157
Query: 106 NIALVNGV 113
+ V+G+
Sbjct: 158 SFHSVSGI 165
>gi|21389623 prominin 2 [Homo sapiens]
Length = 834
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 66 PEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEARAFDM 125
P EHL F + A + P++ L+ S+ V R L++ +N EL++A ++
Sbjct: 35 PAEHLTF-TPAARARWLAPRVRAPG--LLDSLYGTVRRFLSVVQLNPFPSELVKALLNEL 91
Query: 126 WAGDVNDLLKF 136
+ VN+++++
Sbjct: 92 ASVKVNEVVRY 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,108,596
Number of Sequences: 37866
Number of extensions: 418148
Number of successful extensions: 947
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 25
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.