Guide to the Human Genome
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Name: FAM3A Sequence: fasta or formatted (230aa) NCBI GI: 13324682
Description:

family 3, member A protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         18           2
 C cysteine            2.2          5           1
 D aspartate           3.5          8           2
 E glutamate           7.0         16           2
 F phenylalanine       4.3         10           1
 G glycine             8.7         20           2
 H histidine           1.7          4           1
 I isoleucine          4.3         10           1
 K lysine              6.1         14           1
 L leucine             9.1         21           2
 M methionine          2.6          6           1
 N asparagine          4.3         10           1
 P proline             6.1         14           1
 Q glutamine           2.2          5           2
 R arginine            6.1         14           2
 S serine              8.3         19           2
 T threonine           3.0          7           1
 V valine             10.0         23           2
 W tryptophan          1.3          3           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family 3, member A protein 
FAM3D                 0.523   family with sequence similarity 3, member D 
FAM3C                 0.498   family with sequence similarity 3, member C precurso...
FAM3C                 0.498   family with sequence similarity 3, member C precursor...
FAM3B                 0.263   family with sequence similarity 3, member B isoform ...
FAM3B                 0.260   family with sequence similarity 3, member B isoform ...
POMGNT1               0.062   O-linked mannose beta1,2-N-acetylglucosaminyltransf...
KIAA1199              0.059   KIAA1199 
TMEM2                 0.039   transmembrane protein 2 isoform b 
TMEM2                 0.039   transmembrane protein 2 isoform a 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
NAB2                  0.009   NGFI-A binding protein 2 
KLHDC4                0.009   kelch domain containing 4 
ZFP37                 0.007   zinc finger protein 37 homolog 
SULF1                 0.007   sulfatase 1 
SULF1                 0.007   sulfatase 1 
SULF1                 0.007   sulfatase 1 
SULF1                 0.007   sulfatase 1 
ADAM11                0.007   ADAM metallopeptidase domain 11 preproprotein 
D2HGDH                0.007   D-2-hydroxyglutarate dehydrogenase precursor 
PROM2                 0.007   prominin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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